data_5UZ6 # _entry.id 5UZ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UZ6 pdb_00005uz6 10.2210/pdb5uz6/pdb WWPDB D_1000226653 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UZ6 _pdbx_database_status.recvd_initial_deposition_date 2017-02-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Oh, S.S.' 2 ? 'Szostak, J.W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 2829 _citation.page_last 2840 _citation.title 'Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.7b11750 _citation.pdbx_database_id_PubMed 29411978 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Zhou, L.' 3 ? primary 'Oh, S.S.' 4 ? primary 'Wang, J.' 5 ? primary 'Szostak, J.W.' 6 ? # _cell.entry_id 5UZ6 _cell.length_a 106.695 _cell.length_b 63.066 _cell.length_c 65.917 _cell.angle_alpha 90.00 _cell.angle_beta 122.22 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UZ6 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (25-MER)' 8199.013 3 ? ? ? ? 2 polymer syn ;RNA (5'-D(*(8OS))-R(P*CP*AP*CP*CP*UP*CP*A)-3') ; 2549.641 3 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GAGGUG(LCC)(LCC)GAGCGCGAAAGCGCUCG' GAGGUGNNGAGCGCGAAAGCGCUCG A,C,E ? 2 polyribonucleotide no yes '(8OS)CACCUCA' XCACCUCA B,D,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 G n 1 4 G n 1 5 U n 1 6 G n 1 7 LCC n 1 8 LCC n 1 9 G n 1 10 A n 1 11 G n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 A n 1 17 A n 1 18 A n 1 19 G n 1 20 C n 1 21 G n 1 22 C n 1 23 U n 1 24 C n 1 25 G n 2 1 8OS n 2 2 C n 2 3 A n 2 4 C n 2 5 C n 2 6 U n 2 7 C n 2 8 A n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5UZ6 5UZ6 ? 1 ? 1 2 PDB 5UZ6 5UZ6 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UZ6 A 1 ? 25 ? 5UZ6 2 ? 26 ? 2 26 2 2 5UZ6 B 1 ? 8 ? 5UZ6 1 ? 8 ? 1 8 3 1 5UZ6 C 1 ? 25 ? 5UZ6 2 ? 26 ? 2 26 4 2 5UZ6 D 1 ? 8 ? 5UZ6 1 ? 8 ? 1 8 5 1 5UZ6 E 1 ? 25 ? 5UZ6 2 ? 26 ? 2 26 6 2 5UZ6 F 1 ? 8 ? 5UZ6 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OS 'RNA linking' n "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine" ? 'C14 H18 N7 O7 P' 427.309 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UZ6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM MgCl2, 3 M ammonia sulfate, 100 mM HEPES 7.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UZ6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20855 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.7 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.028 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1912 _reflns_shell.percent_possible_all 89 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.323 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_Rsym_value 0.280 _reflns_shell.pdbx_chi_squared 0.625 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.825 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5UZ6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19827 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.267 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 1027 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 47.84 _refine.aniso_B[1][1] 0.00000 _refine.aniso_B[2][2] -0.04000 _refine.aniso_B[3][3] 0.01000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.02000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.pdbx_starting_model 5UX3 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.216 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.161 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.389 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2159 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2213 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.012 ? 2406 'X-RAY DIFFRACTION' ? r_bond_other_d 0.030 0.021 ? 1020 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.452 1.443 ? 3729 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.447 3.072 ? 2451 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.262 0.200 ? 405 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.017 0.020 ? 1248 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 549 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.458 5.064 ? 2403 'X-RAY DIFFRACTION' ? r_scbond_other 4.458 5.064 ? 2404 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.740 7.596 ? 3729 'X-RAY DIFFRACTION' ? r_long_range_B_refined 6.291 50.278 ? 3356 'X-RAY DIFFRACTION' ? r_long_range_B_other 6.283 50.275 ? 3355 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.11 _refine_ls_shell.d_res_low 2.16 _refine_ls_shell.number_reflns_R_work 1226 _refine_ls_shell.R_factor_R_work 0.3110 _refine_ls_shell.percent_reflns_obs 81.77 _refine_ls_shell.R_factor_R_free 0.3600 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5UZ6 _struct.title 'RNA hairpin structure containing 2-MeImp-oligo analogue' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UZ6 _struct_keywords.text 'RNA, 2-MeIm' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 6 "O3'" ? ? ? 1_555 A LCC 7 P ? ? A G 7 A LCC 8 1_555 ? ? ? ? ? ? ? 1.671 ? ? covale2 covale both ? A LCC 7 "O3'" ? ? ? 1_555 A LCC 8 P ? ? A LCC 8 A LCC 9 1_555 ? ? ? ? ? ? ? 1.696 ? ? covale3 covale both ? A LCC 8 "O3'" ? ? ? 1_555 A G 9 P ? ? A LCC 9 A G 10 1_555 ? ? ? ? ? ? ? 1.673 ? ? covale4 covale one ? B 8OS 1 O4 ? ? ? 1_555 B C 2 P ? ? B 8OS 1 B C 2 1_555 ? ? ? ? ? ? ? 1.691 ? ? covale5 covale both ? C G 6 "O3'" ? ? ? 1_555 C LCC 7 P ? ? C G 7 C LCC 8 1_555 ? ? ? ? ? ? ? 1.668 ? ? covale6 covale both ? C LCC 7 "O3'" ? ? ? 1_555 C LCC 8 P ? ? C LCC 8 C LCC 9 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale7 covale both ? C LCC 8 "O3'" ? ? ? 1_555 C G 9 P ? ? C LCC 9 C G 10 1_555 ? ? ? ? ? ? ? 1.670 ? ? covale8 covale one ? D 8OS 1 O4 ? ? ? 1_555 D C 2 P ? ? D 8OS 1 D C 2 1_555 ? ? ? ? ? ? ? 1.702 ? ? covale9 covale both ? E G 6 "O3'" ? ? ? 1_555 E LCC 7 P ? ? E G 7 E LCC 8 1_555 ? ? ? ? ? ? ? 1.700 ? ? covale10 covale both ? E LCC 7 "O3'" ? ? ? 1_555 E LCC 8 P ? ? E LCC 8 E LCC 9 1_555 ? ? ? ? ? ? ? 1.646 ? ? covale11 covale both ? E LCC 8 "O3'" ? ? ? 1_555 E G 9 P ? ? E LCC 9 E G 10 1_555 ? ? ? ? ? ? ? 1.670 ? ? covale12 covale one ? F 8OS 1 O4 ? ? ? 1_555 F C 2 P ? ? F 8OS 1 F C 2 1_555 ? ? ? ? ? ? ? 1.700 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 5 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 5 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 5 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 14 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 14 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 14 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 18 N7 ? ? A G 16 A A 19 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog35 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 2 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 2 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 5 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 5 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 5 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C U 5 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 5 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 9 N1 ? ? ? 1_555 C C 24 N3 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 9 N2 ? ? ? 1_555 C C 24 O2 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 9 O6 ? ? ? 1_555 C C 24 N4 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C A 10 N1 ? ? ? 1_555 C U 23 N3 ? ? C A 11 C U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C A 10 N6 ? ? ? 1_555 C U 23 O4 ? ? C A 11 C U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 11 N1 ? ? ? 1_555 C C 22 N3 ? ? C G 12 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 22 O2 ? ? C G 12 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 11 O6 ? ? ? 1_555 C C 22 N4 ? ? C G 12 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 12 N3 ? ? ? 1_555 C G 21 N1 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 12 N4 ? ? ? 1_555 C G 21 O6 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 12 O2 ? ? ? 1_555 C G 21 N2 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 20 N3 ? ? C G 14 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 20 O2 ? ? C G 14 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 20 N4 ? ? C G 14 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 15 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 15 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 15 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 15 N2 ? ? ? 1_555 C A 18 N7 ? ? C G 16 C A 19 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog69 hydrog ? ? E G 1 N1 ? ? ? 1_555 F C 7 N3 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E G 1 N2 ? ? ? 1_555 F C 7 O2 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E G 1 O6 ? ? ? 1_555 F C 7 N4 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E A 2 N1 ? ? ? 1_555 F U 6 N3 ? ? E A 3 F U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E A 2 N6 ? ? ? 1_555 F U 6 O4 ? ? E A 3 F U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E G 3 N1 ? ? ? 1_555 F C 5 N3 ? ? E G 4 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E G 3 N2 ? ? ? 1_555 F C 5 O2 ? ? E G 4 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E G 3 O6 ? ? ? 1_555 F C 5 N4 ? ? E G 4 F C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E G 4 N1 ? ? ? 1_555 F C 4 N3 ? ? E G 5 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E G 4 N2 ? ? ? 1_555 F C 4 O2 ? ? E G 5 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E G 4 O6 ? ? ? 1_555 F C 4 N4 ? ? E G 5 F C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E U 5 N3 ? ? ? 1_555 F A 3 N1 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E U 5 O4 ? ? ? 1_555 F A 3 N6 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E G 6 N1 ? ? ? 1_555 F C 2 N3 ? ? E G 7 F C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E G 6 N2 ? ? ? 1_555 F C 2 O2 ? ? E G 7 F C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E G 6 O6 ? ? ? 1_555 F C 2 N4 ? ? E G 7 F C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E G 9 N1 ? ? ? 1_555 E C 24 N3 ? ? E G 10 E C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E G 9 N2 ? ? ? 1_555 E C 24 O2 ? ? E G 10 E C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E G 9 O6 ? ? ? 1_555 E C 24 N4 ? ? E G 10 E C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E A 10 N1 ? ? ? 1_555 E U 23 N3 ? ? E A 11 E U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E A 10 N6 ? ? ? 1_555 E U 23 O4 ? ? E A 11 E U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E G 11 N1 ? ? ? 1_555 E C 22 N3 ? ? E G 12 E C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E G 11 N2 ? ? ? 1_555 E C 22 O2 ? ? E G 12 E C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E G 11 O6 ? ? ? 1_555 E C 22 N4 ? ? E G 12 E C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E C 12 N3 ? ? ? 1_555 E G 21 N1 ? ? E C 13 E G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E C 12 N4 ? ? ? 1_555 E G 21 O6 ? ? E C 13 E G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? E C 12 O2 ? ? ? 1_555 E G 21 N2 ? ? E C 13 E G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? E G 13 N1 ? ? ? 1_555 E C 20 N3 ? ? E G 14 E C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? E G 13 N2 ? ? ? 1_555 E C 20 O2 ? ? E G 14 E C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? E G 13 O6 ? ? ? 1_555 E C 20 N4 ? ? E G 14 E C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? E C 14 N3 ? ? ? 1_555 E G 19 N1 ? ? E C 15 E G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? E C 14 N4 ? ? ? 1_555 E G 19 O6 ? ? E C 15 E G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? E C 14 O2 ? ? ? 1_555 E G 19 N2 ? ? E C 15 E G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? E G 15 N2 ? ? ? 1_555 E A 18 N7 ? ? E G 16 E A 19 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5UZ6 _atom_sites.fract_transf_matrix[1][1] 0.009373 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005907 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015856 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017932 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 A 2 3 3 A A A . n A 1 3 G 3 4 4 G G A . n A 1 4 G 4 5 5 G G A . n A 1 5 U 5 6 6 U U A . n A 1 6 G 6 7 7 G G A . n A 1 7 LCC 7 8 8 LCC LCC A . n A 1 8 LCC 8 9 9 LCC LCC A . n A 1 9 G 9 10 10 G G A . n A 1 10 A 10 11 11 A A A . n A 1 11 G 11 12 12 G G A . n A 1 12 C 12 13 13 C C A . n A 1 13 G 13 14 14 G G A . n A 1 14 C 14 15 15 C C A . n A 1 15 G 15 16 16 G G A . n A 1 16 A 16 17 17 A A A . n A 1 17 A 17 18 18 A A A . n A 1 18 A 18 19 19 A A A . n A 1 19 G 19 20 20 G G A . n A 1 20 C 20 21 21 C C A . n A 1 21 G 21 22 22 G G A . n A 1 22 C 22 23 23 C C A . n A 1 23 U 23 24 24 U U A . n A 1 24 C 24 25 25 C C A . n A 1 25 G 25 26 26 G G A . n B 2 1 8OS 1 1 1 8OS 8OS B . n B 2 2 C 2 2 2 C C B . n B 2 3 A 3 3 3 A A B . n B 2 4 C 4 4 4 C C B . n B 2 5 C 5 5 5 C C B . n B 2 6 U 6 6 6 U U B . n B 2 7 C 7 7 7 C C B . n B 2 8 A 8 8 8 A A B . n C 1 1 G 1 2 2 G G C . n C 1 2 A 2 3 3 A A C . n C 1 3 G 3 4 4 G G C . n C 1 4 G 4 5 5 G G C . n C 1 5 U 5 6 6 U U C . n C 1 6 G 6 7 7 G G C . n C 1 7 LCC 7 8 8 LCC LCC C . n C 1 8 LCC 8 9 9 LCC LCC C . n C 1 9 G 9 10 10 G G C . n C 1 10 A 10 11 11 A A C . n C 1 11 G 11 12 12 G G C . n C 1 12 C 12 13 13 C C C . n C 1 13 G 13 14 14 G G C . n C 1 14 C 14 15 15 C C C . n C 1 15 G 15 16 16 G G C . n C 1 16 A 16 17 17 A A C . n C 1 17 A 17 18 18 A A C . n C 1 18 A 18 19 19 A A C . n C 1 19 G 19 20 20 G G C . n C 1 20 C 20 21 21 C C C . n C 1 21 G 21 22 22 G G C . n C 1 22 C 22 23 23 C C C . n C 1 23 U 23 24 24 U U C . n C 1 24 C 24 25 25 C C C . n C 1 25 G 25 26 26 G G C . n D 2 1 8OS 1 1 1 8OS 8OS D . n D 2 2 C 2 2 2 C C D . n D 2 3 A 3 3 3 A A D . n D 2 4 C 4 4 4 C C D . n D 2 5 C 5 5 5 C C D . n D 2 6 U 6 6 6 U U D . n D 2 7 C 7 7 7 C C D . n D 2 8 A 8 8 8 A A D . n E 1 1 G 1 2 2 G G E . n E 1 2 A 2 3 3 A A E . n E 1 3 G 3 4 4 G G E . n E 1 4 G 4 5 5 G G E . n E 1 5 U 5 6 6 U U E . n E 1 6 G 6 7 7 G G E . n E 1 7 LCC 7 8 8 LCC LCC E . n E 1 8 LCC 8 9 9 LCC LCC E . n E 1 9 G 9 10 10 G G E . n E 1 10 A 10 11 11 A A E . n E 1 11 G 11 12 12 G G E . n E 1 12 C 12 13 13 C C E . n E 1 13 G 13 14 14 G G E . n E 1 14 C 14 15 15 C C E . n E 1 15 G 15 16 16 G G E . n E 1 16 A 16 17 17 A A E . n E 1 17 A 17 18 18 A A E . n E 1 18 A 18 19 19 A A E . n E 1 19 G 19 20 20 G G E . n E 1 20 C 20 21 21 C C E . n E 1 21 G 21 22 22 G G E . n E 1 22 C 22 23 23 C C E . n E 1 23 U 23 24 24 U U E . n E 1 24 C 24 25 25 C C E . n E 1 25 G 25 26 26 G G E . n F 2 1 8OS 1 1 1 8OS 8OS F . n F 2 2 C 2 2 2 C C F . n F 2 3 A 3 3 3 A A F . n F 2 4 C 4 4 4 C C F . n F 2 5 C 5 5 5 C C F . n F 2 6 U 6 6 6 U U F . n F 2 7 C 7 7 7 C C F . n F 2 8 A 8 8 8 A A F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 101 101 HOH HOH A . G 3 HOH 2 102 102 HOH HOH A . G 3 HOH 3 103 103 HOH HOH A . G 3 HOH 4 104 104 HOH HOH A . G 3 HOH 5 105 105 HOH HOH A . G 3 HOH 6 106 106 HOH HOH A . G 3 HOH 7 107 107 HOH HOH A . G 3 HOH 8 108 108 HOH HOH A . G 3 HOH 9 109 109 HOH HOH A . G 3 HOH 10 110 110 HOH HOH A . G 3 HOH 11 111 111 HOH HOH A . G 3 HOH 12 112 112 HOH HOH A . G 3 HOH 13 113 113 HOH HOH A . G 3 HOH 14 114 114 HOH HOH A . G 3 HOH 15 115 115 HOH HOH A . H 3 HOH 1 101 101 HOH HOH B . H 3 HOH 2 102 102 HOH HOH B . H 3 HOH 3 103 103 HOH HOH B . H 3 HOH 4 104 104 HOH HOH B . H 3 HOH 5 105 105 HOH HOH B . H 3 HOH 6 106 106 HOH HOH B . H 3 HOH 7 107 107 HOH HOH B . I 3 HOH 1 101 101 HOH HOH C . I 3 HOH 2 102 102 HOH HOH C . I 3 HOH 3 103 104 HOH HOH C . I 3 HOH 4 104 105 HOH HOH C . I 3 HOH 5 105 106 HOH HOH C . I 3 HOH 6 106 108 HOH HOH C . I 3 HOH 7 107 109 HOH HOH C . I 3 HOH 8 108 110 HOH HOH C . I 3 HOH 9 109 111 HOH HOH C . J 3 HOH 1 101 102 HOH HOH D . J 3 HOH 2 102 101 HOH HOH D . J 3 HOH 3 103 103 HOH HOH D . J 3 HOH 4 104 104 HOH HOH D . J 3 HOH 5 105 105 HOH HOH D . K 3 HOH 1 101 101 HOH HOH E . K 3 HOH 2 102 102 HOH HOH E . K 3 HOH 3 103 103 HOH HOH E . K 3 HOH 4 104 104 HOH HOH E . K 3 HOH 5 105 105 HOH HOH E . K 3 HOH 6 106 106 HOH HOH E . K 3 HOH 7 107 107 HOH HOH E . K 3 HOH 8 108 108 HOH HOH E . K 3 HOH 9 109 109 HOH HOH E . K 3 HOH 10 110 110 HOH HOH E . K 3 HOH 11 111 111 HOH HOH E . K 3 HOH 12 112 112 HOH HOH E . L 3 HOH 1 101 101 HOH HOH F . L 3 HOH 2 102 102 HOH HOH F . L 3 HOH 3 103 103 HOH HOH F . L 3 HOH 4 104 104 HOH HOH F . L 3 HOH 5 105 105 HOH HOH F . L 3 HOH 6 106 106 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-21 2 'Structure model' 1 1 2018-03-07 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' diffrn_radiation_wavelength 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? v3.0 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 101 ? ? O E HOH 107 ? ? 1.84 2 1 O F HOH 103 ? ? O F HOH 105 ? ? 1.91 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 8 ? ? P A LCC 9 ? ? 1.696 1.607 0.089 0.012 Y 2 1 "O3'" E G 7 ? ? P E LCC 8 ? ? 1.700 1.607 0.093 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C LCC 8 ? ? "O3'" C LCC 8 ? ? P C LCC 9 ? ? 137.11 119.70 17.41 1.20 Y 2 1 "C3'" C LCC 9 ? ? "O3'" C LCC 9 ? ? P C G 10 ? ? 127.33 119.70 7.63 1.20 Y 3 1 "O3'" C LCC 9 ? ? P C G 10 ? ? "O5'" C G 10 ? ? 86.22 104.00 -17.78 1.90 Y 4 1 "O3'" C LCC 9 ? ? P C G 10 ? ? OP1 C G 10 ? ? 123.85 110.50 13.35 1.10 Y 5 1 "O5'" C A 18 ? ? P C A 18 ? ? OP2 C A 18 ? ? 119.54 110.70 8.84 1.20 N 6 1 "O3'" E G 7 ? ? P E LCC 8 ? ? "O5'" E LCC 8 ? ? 89.31 104.00 -14.69 1.90 Y 7 1 "C3'" E LCC 8 ? ? "O3'" E LCC 8 ? ? P E LCC 9 ? ? 137.30 119.70 17.60 1.20 Y 8 1 "O3'" E LCC 9 ? ? P E G 10 ? ? OP2 E G 10 ? ? 117.15 110.50 6.65 1.10 Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 115 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.19 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id LCC _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 8 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id LCC _pdbx_unobs_or_zero_occ_atoms.label_seq_id 7 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OS O1 O N N 1 8OS C1 C N N 2 8OS N1 N N N 3 8OS C2 C N N 4 8OS N2 N N N 5 8OS N3 N N N 6 8OS C3 C Y N 7 8OS C4 C Y N 8 8OS N4 N Y N 9 8OS C5 C Y N 10 8OS N5 N Y N 11 8OS C6 C N R 12 8OS O2 O N N 13 8OS C7 C N R 14 8OS O3 O N N 15 8OS C8 C N S 16 8OS O4 O N N 17 8OS C9 C N R 18 8OS C10 C N N 19 8OS O5 O N N 20 8OS P1 P N N 21 8OS O6 O N N 22 8OS O7 O N N 23 8OS C11 C Y N 24 8OS N6 N Y N 25 8OS C12 C Y N 26 8OS N7 N Y N 27 8OS C13 C Y N 28 8OS C14 C N N 29 8OS H1 H N N 30 8OS H2 H N N 31 8OS H3 H N N 32 8OS H4 H N N 33 8OS H5 H N N 34 8OS H6 H N N 35 8OS H7 H N N 36 8OS H8 H N N 37 8OS H9 H N N 38 8OS H10 H N N 39 8OS H11 H N N 40 8OS H12 H N N 41 8OS H13 H N N 42 8OS H14 H N N 43 8OS H15 H N N 44 8OS H17 H N N 45 8OS H18 H N N 46 8OS H19 H N N 47 A OP3 O N N 48 A P P N N 49 A OP1 O N N 50 A OP2 O N N 51 A "O5'" O N N 52 A "C5'" C N N 53 A "C4'" C N R 54 A "O4'" O N N 55 A "C3'" C N S 56 A "O3'" O N N 57 A "C2'" C N R 58 A "O2'" O N N 59 A "C1'" C N R 60 A N9 N Y N 61 A C8 C Y N 62 A N7 N Y N 63 A C5 C Y N 64 A C6 C Y N 65 A N6 N N N 66 A N1 N Y N 67 A C2 C Y N 68 A N3 N Y N 69 A C4 C Y N 70 A HOP3 H N N 71 A HOP2 H N N 72 A "H5'" H N N 73 A "H5''" H N N 74 A "H4'" H N N 75 A "H3'" H N N 76 A "HO3'" H N N 77 A "H2'" H N N 78 A "HO2'" H N N 79 A "H1'" H N N 80 A H8 H N N 81 A H61 H N N 82 A H62 H N N 83 A H2 H N N 84 C OP3 O N N 85 C P P N N 86 C OP1 O N N 87 C OP2 O N N 88 C "O5'" O N N 89 C "C5'" C N N 90 C "C4'" C N R 91 C "O4'" O N N 92 C "C3'" C N S 93 C "O3'" O N N 94 C "C2'" C N R 95 C "O2'" O N N 96 C "C1'" C N R 97 C N1 N N N 98 C C2 C N N 99 C O2 O N N 100 C N3 N N N 101 C C4 C N N 102 C N4 N N N 103 C C5 C N N 104 C C6 C N N 105 C HOP3 H N N 106 C HOP2 H N N 107 C "H5'" H N N 108 C "H5''" H N N 109 C "H4'" H N N 110 C "H3'" H N N 111 C "HO3'" H N N 112 C "H2'" H N N 113 C "HO2'" H N N 114 C "H1'" H N N 115 C H41 H N N 116 C H42 H N N 117 C H5 H N N 118 C H6 H N N 119 G OP3 O N N 120 G P P N N 121 G OP1 O N N 122 G OP2 O N N 123 G "O5'" O N N 124 G "C5'" C N N 125 G "C4'" C N R 126 G "O4'" O N N 127 G "C3'" C N S 128 G "O3'" O N N 129 G "C2'" C N R 130 G "O2'" O N N 131 G "C1'" C N R 132 G N9 N Y N 133 G C8 C Y N 134 G N7 N Y N 135 G C5 C Y N 136 G C6 C N N 137 G O6 O N N 138 G N1 N N N 139 G C2 C N N 140 G N2 N N N 141 G N3 N N N 142 G C4 C Y N 143 G HOP3 H N N 144 G HOP2 H N N 145 G "H5'" H N N 146 G "H5''" H N N 147 G "H4'" H N N 148 G "H3'" H N N 149 G "HO3'" H N N 150 G "H2'" H N N 151 G "HO2'" H N N 152 G "H1'" H N N 153 G H8 H N N 154 G H1 H N N 155 G H21 H N N 156 G H22 H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 LCC "O5'" O N N 161 LCC "C5'" C N N 162 LCC "C4'" C N R 163 LCC "O4'" O N N 164 LCC "C1'" C N R 165 LCC N1 N N N 166 LCC C6 C N N 167 LCC C5 C N N 168 LCC C5M C N N 169 LCC C4 C N N 170 LCC N4 N N N 171 LCC N3 N N N 172 LCC C2 C N N 173 LCC O2 O N N 174 LCC "C3'" C N S 175 LCC "C2'" C N R 176 LCC "O2'" O N N 177 LCC "O3'" O N N 178 LCC "C6'" C N N 179 LCC P P N N 180 LCC O1P O N N 181 LCC O2P O N N 182 LCC OXT O N N 183 LCC "H5'1" H N N 184 LCC "H5'2" H N N 185 LCC "H1'" H N N 186 LCC H6 H N N 187 LCC H5M1 H N N 188 LCC H5M2 H N N 189 LCC H5M3 H N N 190 LCC H41 H N N 191 LCC H42 H N N 192 LCC "H3'" H N N 193 LCC "H2'1" H N N 194 LCC H3T H N N 195 LCC "H6'1" H N N 196 LCC "H6'2" H N N 197 LCC H1P H N N 198 LCC HXT H N N 199 U OP3 O N N 200 U P P N N 201 U OP1 O N N 202 U OP2 O N N 203 U "O5'" O N N 204 U "C5'" C N N 205 U "C4'" C N R 206 U "O4'" O N N 207 U "C3'" C N S 208 U "O3'" O N N 209 U "C2'" C N R 210 U "O2'" O N N 211 U "C1'" C N R 212 U N1 N N N 213 U C2 C N N 214 U O2 O N N 215 U N3 N N N 216 U C4 C N N 217 U O4 O N N 218 U C5 C N N 219 U C6 C N N 220 U HOP3 H N N 221 U HOP2 H N N 222 U "H5'" H N N 223 U "H5''" H N N 224 U "H4'" H N N 225 U "H3'" H N N 226 U "HO3'" H N N 227 U "H2'" H N N 228 U "HO2'" H N N 229 U "H1'" H N N 230 U H3 H N N 231 U H5 H N N 232 U H6 H N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OS C14 C13 sing N N 1 8OS O7 P1 doub N N 2 8OS C13 N7 sing Y N 3 8OS C13 C11 doub Y N 4 8OS C10 C9 sing N N 5 8OS C10 O5 sing N N 6 8OS N7 C12 doub Y N 7 8OS O4 C8 sing N N 8 8OS P1 C11 sing N N 9 8OS P1 O5 sing N N 10 8OS P1 O6 sing N N 11 8OS C11 N6 sing Y N 12 8OS C9 C8 sing N N 13 8OS C9 O2 sing N N 14 8OS C8 C7 sing N N 15 8OS C12 N6 sing Y N 16 8OS O2 C6 sing N N 17 8OS O3 C7 sing N N 18 8OS C7 C6 sing N N 19 8OS C6 N5 sing N N 20 8OS C5 N5 sing Y N 21 8OS C5 N4 doub Y N 22 8OS N5 C3 sing Y N 23 8OS N4 C4 sing Y N 24 8OS C3 N3 sing N N 25 8OS C3 C4 doub Y N 26 8OS N3 C2 doub N N 27 8OS C4 C1 sing N N 28 8OS C2 N2 sing N N 29 8OS C2 N1 sing N N 30 8OS C1 N1 sing N N 31 8OS C1 O1 doub N N 32 8OS N1 H1 sing N N 33 8OS N2 H2 sing N N 34 8OS N2 H3 sing N N 35 8OS C5 H4 sing N N 36 8OS C6 H5 sing N N 37 8OS C7 H6 sing N N 38 8OS O3 H7 sing N N 39 8OS C8 H8 sing N N 40 8OS O4 H9 sing N N 41 8OS C9 H10 sing N N 42 8OS C10 H11 sing N N 43 8OS C10 H12 sing N N 44 8OS O6 H13 sing N N 45 8OS N6 H14 sing N N 46 8OS C12 H15 sing N N 47 8OS C14 H17 sing N N 48 8OS C14 H18 sing N N 49 8OS C14 H19 sing N N 50 A OP3 P sing N N 51 A OP3 HOP3 sing N N 52 A P OP1 doub N N 53 A P OP2 sing N N 54 A P "O5'" sing N N 55 A OP2 HOP2 sing N N 56 A "O5'" "C5'" sing N N 57 A "C5'" "C4'" sing N N 58 A "C5'" "H5'" sing N N 59 A "C5'" "H5''" sing N N 60 A "C4'" "O4'" sing N N 61 A "C4'" "C3'" sing N N 62 A "C4'" "H4'" sing N N 63 A "O4'" "C1'" sing N N 64 A "C3'" "O3'" sing N N 65 A "C3'" "C2'" sing N N 66 A "C3'" "H3'" sing N N 67 A "O3'" "HO3'" sing N N 68 A "C2'" "O2'" sing N N 69 A "C2'" "C1'" sing N N 70 A "C2'" "H2'" sing N N 71 A "O2'" "HO2'" sing N N 72 A "C1'" N9 sing N N 73 A "C1'" "H1'" sing N N 74 A N9 C8 sing Y N 75 A N9 C4 sing Y N 76 A C8 N7 doub Y N 77 A C8 H8 sing N N 78 A N7 C5 sing Y N 79 A C5 C6 sing Y N 80 A C5 C4 doub Y N 81 A C6 N6 sing N N 82 A C6 N1 doub Y N 83 A N6 H61 sing N N 84 A N6 H62 sing N N 85 A N1 C2 sing Y N 86 A C2 N3 doub Y N 87 A C2 H2 sing N N 88 A N3 C4 sing Y N 89 C OP3 P sing N N 90 C OP3 HOP3 sing N N 91 C P OP1 doub N N 92 C P OP2 sing N N 93 C P "O5'" sing N N 94 C OP2 HOP2 sing N N 95 C "O5'" "C5'" sing N N 96 C "C5'" "C4'" sing N N 97 C "C5'" "H5'" sing N N 98 C "C5'" "H5''" sing N N 99 C "C4'" "O4'" sing N N 100 C "C4'" "C3'" sing N N 101 C "C4'" "H4'" sing N N 102 C "O4'" "C1'" sing N N 103 C "C3'" "O3'" sing N N 104 C "C3'" "C2'" sing N N 105 C "C3'" "H3'" sing N N 106 C "O3'" "HO3'" sing N N 107 C "C2'" "O2'" sing N N 108 C "C2'" "C1'" sing N N 109 C "C2'" "H2'" sing N N 110 C "O2'" "HO2'" sing N N 111 C "C1'" N1 sing N N 112 C "C1'" "H1'" sing N N 113 C N1 C2 sing N N 114 C N1 C6 sing N N 115 C C2 O2 doub N N 116 C C2 N3 sing N N 117 C N3 C4 doub N N 118 C C4 N4 sing N N 119 C C4 C5 sing N N 120 C N4 H41 sing N N 121 C N4 H42 sing N N 122 C C5 C6 doub N N 123 C C5 H5 sing N N 124 C C6 H6 sing N N 125 G OP3 P sing N N 126 G OP3 HOP3 sing N N 127 G P OP1 doub N N 128 G P OP2 sing N N 129 G P "O5'" sing N N 130 G OP2 HOP2 sing N N 131 G "O5'" "C5'" sing N N 132 G "C5'" "C4'" sing N N 133 G "C5'" "H5'" sing N N 134 G "C5'" "H5''" sing N N 135 G "C4'" "O4'" sing N N 136 G "C4'" "C3'" sing N N 137 G "C4'" "H4'" sing N N 138 G "O4'" "C1'" sing N N 139 G "C3'" "O3'" sing N N 140 G "C3'" "C2'" sing N N 141 G "C3'" "H3'" sing N N 142 G "O3'" "HO3'" sing N N 143 G "C2'" "O2'" sing N N 144 G "C2'" "C1'" sing N N 145 G "C2'" "H2'" sing N N 146 G "O2'" "HO2'" sing N N 147 G "C1'" N9 sing N N 148 G "C1'" "H1'" sing N N 149 G N9 C8 sing Y N 150 G N9 C4 sing Y N 151 G C8 N7 doub Y N 152 G C8 H8 sing N N 153 G N7 C5 sing Y N 154 G C5 C6 sing N N 155 G C5 C4 doub Y N 156 G C6 O6 doub N N 157 G C6 N1 sing N N 158 G N1 C2 sing N N 159 G N1 H1 sing N N 160 G C2 N2 sing N N 161 G C2 N3 doub N N 162 G N2 H21 sing N N 163 G N2 H22 sing N N 164 G N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 LCC "O5'" "C5'" sing N N 168 LCC "O5'" P sing N N 169 LCC "C5'" "C4'" sing N N 170 LCC "C5'" "H5'1" sing N N 171 LCC "C5'" "H5'2" sing N N 172 LCC "C4'" "O4'" sing N N 173 LCC "C4'" "C3'" sing N N 174 LCC "C4'" "C6'" sing N N 175 LCC "O4'" "C1'" sing N N 176 LCC "C1'" N1 sing N N 177 LCC "C1'" "C2'" sing N N 178 LCC "C1'" "H1'" sing N N 179 LCC N1 C6 sing N N 180 LCC N1 C2 sing N N 181 LCC C6 C5 doub N N 182 LCC C6 H6 sing N N 183 LCC C5 C5M sing N N 184 LCC C5 C4 sing N N 185 LCC C5M H5M1 sing N N 186 LCC C5M H5M2 sing N N 187 LCC C5M H5M3 sing N N 188 LCC C4 N4 sing N N 189 LCC C4 N3 doub N N 190 LCC N4 H41 sing N N 191 LCC N4 H42 sing N N 192 LCC N3 C2 sing N N 193 LCC C2 O2 doub N N 194 LCC "C3'" "C2'" sing N N 195 LCC "C3'" "O3'" sing N N 196 LCC "C3'" "H3'" sing N N 197 LCC "C2'" "O2'" sing N N 198 LCC "C2'" "H2'1" sing N N 199 LCC "O2'" "C6'" sing N N 200 LCC "O3'" H3T sing N N 201 LCC "C6'" "H6'1" sing N N 202 LCC "C6'" "H6'2" sing N N 203 LCC P O1P sing N N 204 LCC P O2P doub N N 205 LCC P OXT sing N N 206 LCC O1P H1P sing N N 207 LCC OXT HXT sing N N 208 U OP3 P sing N N 209 U OP3 HOP3 sing N N 210 U P OP1 doub N N 211 U P OP2 sing N N 212 U P "O5'" sing N N 213 U OP2 HOP2 sing N N 214 U "O5'" "C5'" sing N N 215 U "C5'" "C4'" sing N N 216 U "C5'" "H5'" sing N N 217 U "C5'" "H5''" sing N N 218 U "C4'" "O4'" sing N N 219 U "C4'" "C3'" sing N N 220 U "C4'" "H4'" sing N N 221 U "O4'" "C1'" sing N N 222 U "C3'" "O3'" sing N N 223 U "C3'" "C2'" sing N N 224 U "C3'" "H3'" sing N N 225 U "O3'" "HO3'" sing N N 226 U "C2'" "O2'" sing N N 227 U "C2'" "C1'" sing N N 228 U "C2'" "H2'" sing N N 229 U "O2'" "HO2'" sing N N 230 U "C1'" N1 sing N N 231 U "C1'" "H1'" sing N N 232 U N1 C2 sing N N 233 U N1 C6 sing N N 234 U C2 O2 doub N N 235 U C2 N3 sing N N 236 U N3 C4 sing N N 237 U N3 H3 sing N N 238 U C4 O4 doub N N 239 U C4 C5 sing N N 240 U C5 C6 doub N N 241 U C5 H5 sing N N 242 U C6 H6 sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5UZ6 'double helix' 5UZ6 'a-form double helix' 5UZ6 tetraloop 5UZ6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 7 1_555 -0.134 -0.261 -0.257 -7.407 -0.926 0.136 1 A_G2:C7_B A 2 ? B 7 ? 19 1 1 A A 2 1_555 B U 6 1_555 0.289 -0.130 0.131 2.713 -12.180 0.818 2 A_A3:U6_B A 3 ? B 6 ? 20 1 1 A G 3 1_555 B C 5 1_555 -0.250 -0.195 -0.148 -9.317 -17.204 -0.129 3 A_G4:C5_B A 4 ? B 5 ? 19 1 1 A G 4 1_555 B C 4 1_555 -0.180 -0.265 -0.254 -13.673 -17.157 2.089 4 A_G5:C4_B A 5 ? B 4 ? 19 1 1 A U 5 1_555 B A 3 1_555 0.001 -0.351 0.093 -6.534 -10.524 -0.602 5 A_U6:A3_B A 6 ? B 3 ? 20 1 1 A G 6 1_555 B C 2 1_555 -0.279 -0.130 0.326 -2.005 -10.038 -0.253 6 A_G7:C2_B A 7 ? B 2 ? 19 1 1 A G 9 1_555 A C 24 1_555 -0.269 -0.271 0.007 -3.912 -15.231 -1.703 7 A_G10:C25_A A 10 ? A 25 ? 19 1 1 A A 10 1_555 A U 23 1_555 -0.121 -0.197 0.052 -3.099 -15.768 5.801 8 A_A11:U24_A A 11 ? A 24 ? 20 1 1 A G 11 1_555 A C 22 1_555 0.072 0.037 -0.072 -10.186 -13.905 3.952 9 A_G12:C23_A A 12 ? A 23 ? 19 1 1 A C 12 1_555 A G 21 1_555 0.405 -0.281 -0.036 -0.652 -12.437 -2.286 10 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A G 13 1_555 A C 20 1_555 0.017 -0.195 -0.272 -4.997 -5.865 -2.190 11 A_G14:C21_A A 14 ? A 21 ? 19 1 1 A C 14 1_555 A G 19 1_555 0.239 -0.182 0.024 -2.984 1.960 -1.081 12 A_C15:G20_A A 15 ? A 20 ? 19 1 1 A G 15 1_555 A A 18 1_555 7.100 -5.075 0.716 11.349 -2.084 -14.599 13 A_G16:A19_A A 16 ? A 19 ? ? 10 1 C G 1 1_555 D C 7 1_555 -0.448 -0.108 -0.131 -11.205 -4.088 0.580 14 C_G2:C7_D C 2 ? D 7 ? 19 1 1 C A 2 1_555 D U 6 1_555 0.227 -0.245 0.021 -0.671 -11.382 1.208 15 C_A3:U6_D C 3 ? D 6 ? 20 1 1 C G 3 1_555 D C 5 1_555 -0.449 -0.342 -0.404 -8.434 -10.628 -0.802 16 C_G4:C5_D C 4 ? D 5 ? 19 1 1 C G 4 1_555 D C 4 1_555 -0.130 -0.005 -0.287 -13.708 -20.099 2.602 17 C_G5:C4_D C 5 ? D 4 ? 19 1 1 C U 5 1_555 D A 3 1_555 -0.175 -0.179 -0.041 -0.538 -11.644 -1.090 18 C_U6:A3_D C 6 ? D 3 ? 20 1 1 C G 6 1_555 D C 2 1_555 -0.012 -0.172 0.148 0.382 -10.662 1.065 19 C_G7:C2_D C 7 ? D 2 ? 19 1 1 C G 9 1_555 C C 24 1_555 -0.242 -0.235 -0.054 -0.859 -15.730 -1.320 20 C_G10:C25_C C 10 ? C 25 ? 19 1 1 C A 10 1_555 C U 23 1_555 -0.093 -0.255 0.286 -0.036 -16.298 4.899 21 C_A11:U24_C C 11 ? C 24 ? 20 1 1 C G 11 1_555 C C 22 1_555 -0.259 -0.256 -0.129 -3.692 -11.562 1.736 22 C_G12:C23_C C 12 ? C 23 ? 19 1 1 C C 12 1_555 C G 21 1_555 0.147 -0.163 0.106 -1.986 -10.294 -1.224 23 C_C13:G22_C C 13 ? C 22 ? 19 1 1 C G 13 1_555 C C 20 1_555 0.248 -0.090 -0.225 -5.273 -4.155 -0.252 24 C_G14:C21_C C 14 ? C 21 ? 19 1 1 C C 14 1_555 C G 19 1_555 0.311 -0.180 0.040 -5.125 4.015 -1.048 25 C_C15:G20_C C 15 ? C 20 ? 19 1 1 C G 15 1_555 C A 18 1_555 7.095 -5.039 0.749 12.208 -3.751 -15.655 26 C_G16:A19_C C 16 ? C 19 ? ? ? 1 E G 1 1_555 F C 7 1_555 -0.505 -0.105 -0.187 -8.254 -1.605 -0.863 27 E_G2:C7_F E 2 ? F 7 ? 19 1 1 E A 2 1_555 F U 6 1_555 0.340 -0.307 0.087 0.403 -7.458 -3.908 28 E_A3:U6_F E 3 ? F 6 ? 20 1 1 E G 3 1_555 F C 5 1_555 -0.181 -0.259 -0.301 -9.813 -13.838 -1.096 29 E_G4:C5_F E 4 ? F 5 ? 19 1 1 E G 4 1_555 F C 4 1_555 -0.340 -0.111 0.041 -11.457 -19.259 3.867 30 E_G5:C4_F E 5 ? F 4 ? 19 1 1 E U 5 1_555 F A 3 1_555 0.038 -0.245 0.165 -7.214 -10.564 -0.311 31 E_U6:A3_F E 6 ? F 3 ? 20 1 1 E G 6 1_555 F C 2 1_555 -0.193 -0.202 0.211 -1.576 -14.255 0.456 32 E_G7:C2_F E 7 ? F 2 ? 19 1 1 E G 9 1_555 E C 24 1_555 -0.045 -0.261 -0.120 -3.180 -8.680 -2.195 33 E_G10:C25_E E 10 ? E 25 ? 19 1 1 E A 10 1_555 E U 23 1_555 0.098 -0.155 0.056 -1.307 -12.351 5.014 34 E_A11:U24_E E 11 ? E 24 ? 20 1 1 E G 11 1_555 E C 22 1_555 -0.387 0.081 0.076 -3.322 -16.382 6.957 35 E_G12:C23_E E 12 ? E 23 ? 19 1 1 E C 12 1_555 E G 21 1_555 0.103 -0.303 0.128 -2.685 -8.259 -2.489 36 E_C13:G22_E E 13 ? E 22 ? 19 1 1 E G 13 1_555 E C 20 1_555 -0.041 -0.080 -0.062 -5.776 -9.747 -0.198 37 E_G14:C21_E E 14 ? E 21 ? 19 1 1 E C 14 1_555 E G 19 1_555 0.379 -0.105 -0.163 -1.968 0.411 -0.251 38 E_C15:G20_E E 15 ? E 20 ? 19 1 1 E G 15 1_555 E A 18 1_555 7.102 -5.215 0.918 9.728 -3.083 -13.469 39 E_G16:A19_E E 16 ? E 19 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 7 1_555 A A 2 1_555 B U 6 1_555 0.144 -1.379 3.044 -2.551 6.523 30.789 -3.611 -0.685 2.682 12.091 4.728 31.557 1 AA_G2A3:U6C7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A A 2 1_555 B U 6 1_555 A G 3 1_555 B C 5 1_555 -0.270 -1.859 3.421 0.486 12.059 31.473 -5.071 0.542 2.552 21.276 -0.858 33.653 2 AA_A3G4:C5U6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A G 3 1_555 B C 5 1_555 A G 4 1_555 B C 4 1_555 0.679 -1.982 3.356 3.702 9.500 28.812 -5.551 -0.594 2.648 18.381 -7.162 30.526 3 AA_G4G5:C4C5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A G 4 1_555 B C 4 1_555 A U 5 1_555 B A 3 1_555 -0.645 -1.189 3.080 -3.060 2.503 34.234 -2.372 0.643 3.033 4.235 5.176 34.454 4 AA_G5U6:A3C4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A U 5 1_555 B A 3 1_555 A G 6 1_555 B C 2 1_555 0.566 -1.605 3.039 -0.820 6.845 29.527 -4.276 -1.227 2.594 13.205 1.582 30.303 5 AA_U6G7:C2A3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A G 9 1_555 A C 24 1_555 A A 10 1_555 A U 23 1_555 0.219 -1.160 3.234 -1.472 4.684 32.701 -2.802 -0.625 3.031 8.260 2.596 33.058 6 AA_G10A11:U24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A A 10 1_555 A U 23 1_555 A G 11 1_555 A C 22 1_555 0.058 -1.409 3.372 2.291 11.888 33.586 -3.963 0.226 2.731 19.792 -3.814 35.642 7 AA_A11G12:C23U24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A G 11 1_555 A C 22 1_555 A C 12 1_555 A G 21 1_555 0.857 -2.066 3.075 4.393 4.395 24.492 -5.889 -0.798 2.777 10.152 -10.147 25.256 8 AA_G12C13:G22C23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 12 1_555 A G 21 1_555 A G 13 1_555 A C 20 1_555 0.556 -1.914 3.349 3.594 11.388 29.715 -5.393 -0.404 2.513 21.161 -6.678 31.974 9 AA_C13G14:C21G22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A G 13 1_555 A C 20 1_555 A C 14 1_555 A G 19 1_555 0.095 -2.387 3.322 -2.191 1.631 29.505 -5.010 -0.646 3.173 3.195 4.291 29.629 10 AA_G14C15:G20C21_AA A 14 ? A 21 ? A 15 ? A 20 ? 1 A C 14 1_555 A G 19 1_555 A G 15 1_555 A A 18 1_555 -1.927 -1.147 2.857 -2.191 5.541 52.241 -1.610 2.052 2.803 6.270 2.479 52.556 11 AA_C15G16:A19G20_AA A 15 ? A 20 ? A 16 ? A 19 ? 1 C G 1 1_555 D C 7 1_555 C A 2 1_555 D U 6 1_555 0.107 -1.405 3.043 -1.304 7.688 32.164 -3.614 -0.382 2.640 13.628 2.312 33.071 12 CC_G2A3:U6C7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 C A 2 1_555 D U 6 1_555 C G 3 1_555 D C 5 1_555 -0.282 -1.810 3.404 1.578 7.465 30.564 -4.696 0.807 2.875 13.891 -2.936 31.480 13 CC_A3G4:C5U6_DD C 3 ? D 6 ? C 4 ? D 5 ? 1 C G 3 1_555 D C 5 1_555 C G 4 1_555 D C 4 1_555 0.894 -2.063 3.377 2.994 11.355 29.799 -5.665 -1.116 2.518 21.080 -5.558 31.980 14 CC_G4G5:C4C5_DD C 4 ? D 5 ? C 5 ? D 4 ? 1 C G 4 1_555 D C 4 1_555 C U 5 1_555 D A 3 1_555 -0.751 -1.544 2.939 -3.893 1.937 30.069 -3.296 0.732 2.908 3.709 7.454 30.375 15 CC_G5U6:A3C4_DD C 5 ? D 4 ? C 6 ? D 3 ? 1 C U 5 1_555 D A 3 1_555 C G 6 1_555 D C 2 1_555 0.343 -1.571 3.143 -1.760 9.022 31.058 -4.243 -0.894 2.574 16.404 3.201 32.357 16 CC_U6G7:C2A3_DD C 6 ? D 3 ? C 7 ? D 2 ? 1 C G 9 1_555 C C 24 1_555 C A 10 1_555 C U 23 1_555 0.443 -1.648 3.098 -3.464 9.227 31.938 -4.204 -1.273 2.479 16.291 6.116 33.387 17 CC_G10A11:U24C25_CC C 10 ? C 25 ? C 11 ? C 24 ? 1 C A 10 1_555 C U 23 1_555 C G 11 1_555 C C 22 1_555 -0.690 -1.519 3.284 1.465 8.968 31.546 -4.136 1.459 2.727 16.083 -2.626 32.797 18 CC_A11G12:C23U24_CC C 11 ? C 24 ? C 12 ? C 23 ? 1 C G 11 1_555 C C 22 1_555 C C 12 1_555 C G 21 1_555 0.407 -1.428 3.160 -0.152 6.379 32.567 -3.493 -0.737 2.835 11.240 0.268 33.170 19 CC_G12C13:G22C23_CC C 12 ? C 23 ? C 13 ? C 22 ? 1 C C 12 1_555 C G 21 1_555 C G 13 1_555 C C 20 1_555 0.792 -1.988 3.260 4.549 7.911 30.054 -5.073 -0.661 2.748 14.831 -8.529 31.379 20 CC_C13G14:C21G22_CC C 13 ? C 22 ? C 14 ? C 21 ? 1 C G 13 1_555 C C 20 1_555 C C 14 1_555 C G 19 1_555 -0.158 -2.292 3.391 -2.154 1.594 30.049 -4.736 -0.143 3.271 3.067 4.144 30.165 21 CC_G14C15:G20C21_CC C 14 ? C 21 ? C 15 ? C 20 ? 1 C C 14 1_555 C G 19 1_555 C G 15 1_555 C A 18 1_555 -1.970 -1.057 2.761 -2.711 4.856 52.094 -1.468 2.081 2.751 5.512 3.077 52.370 22 CC_C15G16:A19G20_CC C 15 ? C 20 ? C 16 ? C 19 ? 1 E G 1 1_555 F C 7 1_555 E A 2 1_555 F U 6 1_555 -0.038 -1.496 3.096 -0.960 5.121 34.109 -3.249 -0.072 2.848 8.667 1.625 34.493 23 EE_G2A3:U6C7_FF E 2 ? F 7 ? E 3 ? F 6 ? 1 E A 2 1_555 F U 6 1_555 E G 3 1_555 F C 5 1_555 -0.090 -1.900 3.359 2.192 11.085 31.385 -5.036 0.498 2.548 19.709 -3.898 33.309 24 EE_A3G4:C5U6_FF E 3 ? F 6 ? E 4 ? F 5 ? 1 E G 3 1_555 F C 5 1_555 E G 4 1_555 F C 4 1_555 0.937 -2.033 3.158 0.387 8.844 28.064 -5.665 -1.774 2.430 17.688 -0.774 29.400 25 EE_G4G5:C4C5_FF E 4 ? F 5 ? E 5 ? F 4 ? 1 E G 4 1_555 F C 4 1_555 E U 5 1_555 F A 3 1_555 -0.571 -1.352 3.108 -1.796 3.087 33.855 -2.771 0.707 3.002 5.283 3.074 34.038 26 EE_G5U6:A3C4_FF E 5 ? F 4 ? E 6 ? F 3 ? 1 E U 5 1_555 F A 3 1_555 E G 6 1_555 F C 2 1_555 0.307 -1.636 2.939 0.123 8.392 30.996 -4.218 -0.537 2.426 15.353 -0.225 32.085 27 EE_U6G7:C2A3_FF E 6 ? F 3 ? E 7 ? F 2 ? 1 E G 9 1_555 E C 24 1_555 E A 10 1_555 E U 23 1_555 0.503 -1.337 3.205 -0.950 6.915 33.917 -3.248 -0.983 2.870 11.700 1.608 34.607 28 EE_G10A11:U24C25_EE E 10 ? E 25 ? E 11 ? E 24 ? 1 E A 10 1_555 E U 23 1_555 E G 11 1_555 E C 22 1_555 0.027 -1.789 3.145 1.958 11.970 29.920 -5.059 0.252 2.277 22.076 -3.612 32.233 29 EE_A11G12:C23U24_EE E 11 ? E 24 ? E 12 ? E 23 ? 1 E G 11 1_555 E C 22 1_555 E C 12 1_555 E G 21 1_555 -0.239 -2.135 3.298 0.106 1.727 32.720 -4.080 0.441 3.183 3.062 -0.187 32.764 30 EE_G12C13:G22C23_EE E 12 ? E 23 ? E 13 ? E 22 ? 1 E C 12 1_555 E G 21 1_555 E G 13 1_555 E C 20 1_555 0.641 -1.645 3.239 3.214 8.235 32.755 -4.066 -0.613 2.804 14.281 -5.574 33.895 31 EE_C13G14:C21G22_EE E 13 ? E 22 ? E 14 ? E 21 ? 1 E G 13 1_555 E C 20 1_555 E C 14 1_555 E G 19 1_555 0.129 -2.306 3.112 1.683 2.105 31.438 -4.604 0.054 2.958 3.877 -3.098 31.550 32 EE_G14C15:G20C21_EE E 14 ? E 21 ? E 15 ? E 20 ? 1 E C 14 1_555 E G 19 1_555 E G 15 1_555 E A 18 1_555 -1.751 -1.171 2.984 -1.803 11.094 52.095 -1.934 1.853 2.754 12.467 2.026 53.211 33 EE_C15G16:A19G20_EE E 15 ? E 20 ? E 16 ? E 19 ? # _pdbx_audit_support.funding_organization 'National Aeronautic Space Administration (NASA, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5UX3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #