data_5UZA # _entry.id 5UZA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UZA pdb_00005uza 10.2210/pdb5uza/pdb WWPDB D_1000226652 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-28 2 'Structure model' 1 1 2018-04-18 3 'Structure model' 1 2 2018-04-25 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_detector 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_detector.detector' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 3 'Structure model' '_citation_author.name' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.value' 32 4 'Structure model' '_struct_conn.conn_type_id' 33 4 'Structure model' '_struct_conn.id' 34 4 'Structure model' '_struct_conn.pdbx_dist_value' 35 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 36 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 42 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_symmetry' 49 4 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UZA _pdbx_database_status.recvd_initial_deposition_date 2017-02-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, Y.' 1 ? 'Stagno, J.R.' 2 ? 'Wang, Y.-X.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Protoc' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1750-2799 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 987 _citation.page_last 1005 _citation.title 'Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nprot.2018.002 _citation.pdbx_database_id_PubMed 29651055 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Holmstrom, E.' 2 ? primary 'Yu, P.' 3 ? primary 'Tan, K.' 4 ? primary 'Zuo, X.' 5 ? primary 'Nesbitt, D.J.' 6 ? primary 'Sousa, R.' 7 ? primary 'Stagno, J.R.' 8 ? primary 'Wang, Y.X.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (71-MER)' 22939.178 1 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGGAAGAUAUAAUCC(IU)AA(IU)GAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC' _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 IU n 1 17 A n 1 18 A n 1 19 IU n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IU 'RNA linking' n "5-IODOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O9 P' 450.078 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G X . n A 1 2 G 2 14 14 G G X . n A 1 3 G 3 15 15 G G X . n A 1 4 A 4 16 16 A A X . n A 1 5 A 5 17 17 A A X . n A 1 6 G 6 18 18 G G X . n A 1 7 A 7 19 19 A A X . n A 1 8 U 8 20 20 U U X . n A 1 9 A 9 21 21 A A X . n A 1 10 U 10 22 22 U U X . n A 1 11 A 11 23 23 A A X . n A 1 12 A 12 24 24 A A X . n A 1 13 U 13 25 25 U U X . n A 1 14 C 14 26 26 C C X . n A 1 15 C 15 27 27 C C X . n A 1 16 IU 16 28 28 IU IU X . n A 1 17 A 17 29 29 A A X . n A 1 18 A 18 30 30 A A X . n A 1 19 IU 19 31 31 IU IU X . n A 1 20 G 20 32 32 G G X . n A 1 21 A 21 33 33 A A X . n A 1 22 U 22 34 34 U U X . n A 1 23 A 23 35 35 A A X . n A 1 24 U 24 36 36 U U X . n A 1 25 G 25 37 37 G G X . n A 1 26 G 26 38 38 G G X . n A 1 27 U 27 39 39 U U X . n A 1 28 U 28 40 40 U U X . n A 1 29 U 29 41 41 U U X . n A 1 30 G 30 42 42 G G X . n A 1 31 G 31 43 43 G G X . n A 1 32 G 32 44 44 G G X . n A 1 33 A 33 45 45 A A X . n A 1 34 G 34 46 46 G G X . n A 1 35 U 35 47 47 U U X . n A 1 36 U 36 48 48 U U X . n A 1 37 U 37 49 49 U U X . n A 1 38 C 38 50 50 C C X . n A 1 39 U 39 51 51 U U X . n A 1 40 A 40 52 52 A A X . n A 1 41 C 41 53 53 C C X . n A 1 42 C 42 54 54 C C X . n A 1 43 A 43 55 55 A A X . n A 1 44 A 44 56 56 A A X . n A 1 45 G 45 57 57 G G X . n A 1 46 A 46 58 58 A A X . n A 1 47 G 47 59 59 G G X . n A 1 48 C 48 60 60 C C X . n A 1 49 C 49 61 61 C C X . n A 1 50 U 50 62 62 U U X . n A 1 51 U 51 63 63 U U X . n A 1 52 A 52 64 64 A A X . n A 1 53 A 53 65 65 A A X . n A 1 54 A 54 66 66 A A X . n A 1 55 C 55 67 67 C C X . n A 1 56 U 56 68 68 U U X . n A 1 57 C 57 69 69 C C X . n A 1 58 U 58 70 70 U U X . n A 1 59 U 59 71 71 U U X . n A 1 60 G 60 72 72 G G X . n A 1 61 A 61 73 73 A A X . n A 1 62 U 62 74 74 U U X . n A 1 63 U 63 75 75 U U X . n A 1 64 A 64 76 76 A A X . n A 1 65 U 65 77 77 U U X . n A 1 66 C 66 78 78 C C X . n A 1 67 U 67 79 79 U U X . n A 1 68 U 68 80 80 U U X . n A 1 69 C 69 81 81 C C X . n A 1 70 C 70 82 82 C C X . n A 1 71 C 71 83 83 C C X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 101 101 ADE A X . C 3 MG 1 102 102 MG MG X . D 3 MG 1 103 103 MG MG X . E 3 MG 1 104 104 MG MG X . F 4 HOH 1 201 9 HOH HOH X . F 4 HOH 2 202 13 HOH HOH X . F 4 HOH 3 203 96 HOH HOH X . F 4 HOH 4 204 3 HOH HOH X . F 4 HOH 5 205 61 HOH HOH X . F 4 HOH 6 206 21 HOH HOH X . F 4 HOH 7 207 73 HOH HOH X . F 4 HOH 8 208 35 HOH HOH X . F 4 HOH 9 209 86 HOH HOH X . F 4 HOH 10 210 33 HOH HOH X . F 4 HOH 11 211 7 HOH HOH X . F 4 HOH 12 212 32 HOH HOH X . F 4 HOH 13 213 76 HOH HOH X . F 4 HOH 14 214 88 HOH HOH X . F 4 HOH 15 215 39 HOH HOH X . F 4 HOH 16 216 82 HOH HOH X . F 4 HOH 17 217 41 HOH HOH X . F 4 HOH 18 218 87 HOH HOH X . F 4 HOH 19 219 94 HOH HOH X . F 4 HOH 20 220 74 HOH HOH X . F 4 HOH 21 221 8 HOH HOH X . F 4 HOH 22 222 95 HOH HOH X . F 4 HOH 23 223 77 HOH HOH X . F 4 HOH 24 224 65 HOH HOH X . F 4 HOH 25 225 47 HOH HOH X . F 4 HOH 26 226 89 HOH HOH X . F 4 HOH 27 227 6 HOH HOH X . F 4 HOH 28 228 52 HOH HOH X . F 4 HOH 29 229 15 HOH HOH X . F 4 HOH 30 230 20 HOH HOH X . F 4 HOH 31 231 10 HOH HOH X . F 4 HOH 32 232 54 HOH HOH X . F 4 HOH 33 233 18 HOH HOH X . F 4 HOH 34 234 93 HOH HOH X . F 4 HOH 35 235 63 HOH HOH X . F 4 HOH 36 236 85 HOH HOH X . F 4 HOH 37 237 92 HOH HOH X . F 4 HOH 38 238 64 HOH HOH X . F 4 HOH 39 239 60 HOH HOH X . F 4 HOH 40 240 46 HOH HOH X . F 4 HOH 41 241 30 HOH HOH X . F 4 HOH 42 242 90 HOH HOH X . F 4 HOH 43 243 2 HOH HOH X . F 4 HOH 44 244 31 HOH HOH X . F 4 HOH 45 245 51 HOH HOH X . F 4 HOH 46 246 91 HOH HOH X . F 4 HOH 47 247 45 HOH HOH X . F 4 HOH 48 248 37 HOH HOH X . F 4 HOH 49 249 1 HOH HOH X . F 4 HOH 50 250 50 HOH HOH X . F 4 HOH 51 251 49 HOH HOH X . F 4 HOH 52 252 59 HOH HOH X . F 4 HOH 53 253 53 HOH HOH X . F 4 HOH 54 254 97 HOH HOH X . F 4 HOH 55 255 83 HOH HOH X . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_2447 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5UZA _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.985 _cell.length_a_esd ? _cell.length_b 151.575 _cell.length_b_esd ? _cell.length_c 24.735 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UZA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50mM Tris-HCl (pH:8.5), 100mM KCl, 10mM MgCl2 and 30% Polyethylene Glycol 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.55 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.55 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 36.440 _reflns.entry_id 5UZA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.220 _reflns.d_resolution_low 46.611 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17080 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.500 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.051 _reflns.pdbx_Rpim_I_all 0.017 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.220 2.300 ? ? ? ? ? ? ? 99.300 ? ? ? ? 0.658 ? ? ? ? ? ? ? ? 5.200 ? 0.770 ? ? 0.729 0.307 ? 1 1 0.775 ? 2.300 2.390 ? ? ? ? ? ? ? 99.900 ? ? ? ? 0.584 ? ? ? ? ? ? ? ? 7.600 ? 0.792 ? ? 0.627 0.225 ? 2 1 0.896 ? 2.390 2.500 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.421 ? ? ? ? ? ? ? ? 9.000 ? 0.849 ? ? 0.447 0.148 ? 3 1 0.955 ? 2.500 2.630 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.290 ? ? ? ? ? ? ? ? 9.200 ? 0.894 ? ? 0.307 0.101 ? 4 1 0.978 ? 2.630 2.800 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.175 ? ? ? ? ? ? ? ? 9.300 ? 0.901 ? ? 0.185 0.061 ? 5 1 0.985 ? 2.800 3.010 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 9.200 ? 0.920 ? ? 0.095 0.031 ? 6 1 0.996 ? 3.010 3.320 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.040 ? ? ? ? ? ? ? ? 9.200 ? 1.062 ? ? 0.042 0.014 ? 7 1 0.998 ? 3.320 3.800 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 9.100 ? 1.055 ? ? 0.033 0.011 ? 8 1 0.998 ? 3.800 4.780 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.027 ? ? ? ? ? ? ? ? 9.000 ? 1.091 ? ? 0.029 0.009 ? 9 1 0.998 ? 4.780 50.000 ? ? ? ? ? ? ? 98.100 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 8.000 ? 1.138 ? ? 0.031 0.011 ? 10 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 107.740 _refine.B_iso_mean 42.0833 _refine.B_iso_min 14.210 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UZA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2200 _refine.ls_d_res_low 46.6110 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17080 _refine.ls_number_reflns_R_free 851 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.1700 _refine.ls_percent_reflns_R_free 4.9800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2170 _refine.ls_R_factor_R_free 0.2509 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2152 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.170 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.4500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.2200 _refine_hist.d_res_low 46.6110 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1577 _refine_hist.pdbx_number_residues_total 71 _refine_hist.pdbx_B_iso_mean_ligand 26.09 _refine_hist.pdbx_B_iso_mean_solvent 35.38 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1505 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1705 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.386 ? 2630 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.023 ? 353 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 72 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.521 ? 833 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.2196 2.3586 2414 . 107 2307 84.0000 . . . 0.3456 0.0000 0.2912 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.3586 2.5407 2942 . 152 2790 100.0000 . . . 0.3457 0.0000 0.2971 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.5407 2.7964 2951 . 159 2792 100.0000 . . . 0.3244 0.0000 0.2986 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.7964 3.2010 2923 . 150 2773 100.0000 . . . 0.2994 0.0000 0.2436 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.2010 4.0325 2944 . 140 2804 100.0000 . . . 0.2280 0.0000 0.1857 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 4.0325 46.6216 2906 . 143 2763 99.0000 . . . 0.1755 0.0000 0.1602 . . . . . . 6 . . . # _struct.entry_id 5UZA _struct.title 'Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UZA _struct_keywords.text 'RNA, adenine riboswitch, iodo-uridine' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5UZA _struct_ref.pdbx_db_accession 5UZA _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5UZA _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5UZA _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 83 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 15 "O3'" ? ? ? 1_555 A IU 16 P ? ? X C 27 X IU 28 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A IU 16 "O3'" ? ? ? 1_555 A A 17 P ? ? X IU 28 X A 29 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? A A 18 "O3'" ? ? ? 1_555 A IU 19 P ? ? X A 30 X IU 31 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale both ? A IU 19 "O3'" ? ? ? 1_555 A G 20 P ? ? X IU 31 X G 32 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A G 1 OP1 ? ? ? 1_555 E MG . MG ? ? X G 13 X MG 104 2_355 ? ? ? ? ? ? ? 2.264 ? ? metalc2 metalc ? ? A A 11 OP2 ? ? ? 1_555 C MG . MG ? ? X A 23 X MG 102 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc3 metalc ? ? A A 12 OP1 ? ? ? 1_555 D MG . MG ? ? X A 24 X MG 103 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc4 metalc ? ? A C 71 OP2 ? ? ? 1_555 E MG . MG ? ? X C 83 X MG 104 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 102 X HOH 217 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 102 X HOH 228 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 102 X HOH 245 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 102 X HOH 250 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 102 X HOH 251 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 103 X HOH 209 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 103 X HOH 218 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 103 X HOH 236 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 103 X HOH 241 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 103 X HOH 244 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? X MG 104 X HOH 254 1_555 ? ? ? ? ? ? ? 2.139 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 71 O2 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A IU 16 N3 ? ? ? 1_555 A G 30 O6 ? ? X IU 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A IU 16 O2 ? ? ? 1_555 A G 30 N1 ? ? X IU 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A IU 19 N3 ? ? ? 1_555 A U 27 O4 ? ? X IU 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A IU 19 O2 ? ? ? 1_555 A U 27 N3 ? ? X IU 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? X U 34 X G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog48 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? X A 35 X A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? X A 35 X A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog50 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog58 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? X U 47 X U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog62 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? X U 49 X A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog63 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? X C 50 X U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog64 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? X C 61 X A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 1 ? X G 13 ? 1_555 MG ? E MG . ? X MG 104 ? 2_355 OP2 ? A C 71 ? X C 83 ? 1_555 45.9 ? 2 OP1 ? A G 1 ? X G 13 ? 1_555 MG ? E MG . ? X MG 104 ? 2_355 O ? F HOH . ? X HOH 254 ? 1_555 57.6 ? 3 OP2 ? A C 71 ? X C 83 ? 1_555 MG ? E MG . ? X MG 104 ? 2_355 O ? F HOH . ? X HOH 254 ? 1_555 12.1 ? 4 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 217 ? 1_555 93.3 ? 5 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 228 ? 1_555 100.4 ? 6 O ? F HOH . ? X HOH 217 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 228 ? 1_555 100.3 ? 7 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 245 ? 1_555 175.6 ? 8 O ? F HOH . ? X HOH 217 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 245 ? 1_555 90.2 ? 9 O ? F HOH . ? X HOH 228 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 245 ? 1_555 76.3 ? 10 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 250 ? 1_555 102.8 ? 11 O ? F HOH . ? X HOH 217 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 250 ? 1_555 162.7 ? 12 O ? F HOH . ? X HOH 228 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 250 ? 1_555 83.1 ? 13 O ? F HOH . ? X HOH 245 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 250 ? 1_555 74.0 ? 14 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 251 ? 1_555 104.1 ? 15 O ? F HOH . ? X HOH 217 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 251 ? 1_555 85.4 ? 16 O ? F HOH . ? X HOH 228 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 251 ? 1_555 154.5 ? 17 O ? F HOH . ? X HOH 245 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 251 ? 1_555 78.8 ? 18 O ? F HOH . ? X HOH 250 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? F HOH . ? X HOH 251 ? 1_555 84.6 ? 19 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 209 ? 1_555 89.2 ? 20 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 218 ? 1_555 162.1 ? 21 O ? F HOH . ? X HOH 209 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 218 ? 1_555 86.2 ? 22 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 236 ? 1_555 88.9 ? 23 O ? F HOH . ? X HOH 209 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 236 ? 1_555 90.5 ? 24 O ? F HOH . ? X HOH 218 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 236 ? 1_555 73.9 ? 25 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 241 ? 1_555 94.7 ? 26 O ? F HOH . ? X HOH 209 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 241 ? 1_555 95.4 ? 27 O ? F HOH . ? X HOH 218 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 241 ? 1_555 103.0 ? 28 O ? F HOH . ? X HOH 236 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 241 ? 1_555 173.1 ? 29 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 244 ? 1_555 96.0 ? 30 O ? F HOH . ? X HOH 209 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 244 ? 1_555 174.2 ? 31 O ? F HOH . ? X HOH 218 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 244 ? 1_555 88.0 ? 32 O ? F HOH . ? X HOH 236 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 244 ? 1_555 87.2 ? 33 O ? F HOH . ? X HOH 241 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? F HOH . ? X HOH 244 ? 1_555 86.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X ADE 101 ? 9 'binding site for residue ADE X 101' AC2 Software X MG 102 ? 6 'binding site for residue MG X 102' AC3 Software X MG 103 ? 6 'binding site for residue MG X 103' AC4 Software X MG 104 ? 3 'binding site for residue MG X 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 A A 9 ? A X 21 . ? 1_555 ? 2 AC1 9 U A 10 ? U X 22 . ? 1_555 ? 3 AC1 9 U A 35 ? U X 47 . ? 1_555 ? 4 AC1 9 U A 39 ? U X 51 . ? 1_555 ? 5 AC1 9 A A 40 ? A X 52 . ? 1_555 ? 6 AC1 9 A A 61 ? A X 73 . ? 1_555 ? 7 AC1 9 U A 62 ? U X 74 . ? 1_555 ? 8 AC1 9 U A 63 ? U X 75 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH X 217 . ? 1_555 ? 10 AC2 6 A A 11 ? A X 23 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH X 217 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH X 228 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH X 245 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH X 250 . ? 1_555 ? 15 AC2 6 HOH F . ? HOH X 251 . ? 1_555 ? 16 AC3 6 A A 12 ? A X 24 . ? 1_555 ? 17 AC3 6 HOH F . ? HOH X 209 . ? 1_555 ? 18 AC3 6 HOH F . ? HOH X 218 . ? 1_555 ? 19 AC3 6 HOH F . ? HOH X 236 . ? 1_555 ? 20 AC3 6 HOH F . ? HOH X 241 . ? 1_555 ? 21 AC3 6 HOH F . ? HOH X 244 . ? 1_555 ? 22 AC4 3 G A 1 ? G X 13 . ? 2_355 ? 23 AC4 3 C A 71 ? C X 83 . ? 1_555 ? 24 AC4 3 HOH F . ? HOH X 254 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 X _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 13 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 X _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 13 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.480 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.127 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -21.4310 _pdbx_refine_tls.origin_y 19.2257 _pdbx_refine_tls.origin_z -11.1448 _pdbx_refine_tls.T[1][1] 0.2233 _pdbx_refine_tls.T[2][2] 0.1851 _pdbx_refine_tls.T[3][3] 0.1505 _pdbx_refine_tls.T[1][2] -0.0025 _pdbx_refine_tls.T[1][3] -0.0438 _pdbx_refine_tls.T[2][3] 0.0366 _pdbx_refine_tls.L[1][1] 1.6717 _pdbx_refine_tls.L[2][2] 2.2219 _pdbx_refine_tls.L[3][3] 0.4157 _pdbx_refine_tls.L[1][2] 0.0599 _pdbx_refine_tls.L[1][3] -0.3413 _pdbx_refine_tls.L[2][3] 0.0333 _pdbx_refine_tls.S[1][1] 0.0205 _pdbx_refine_tls.S[2][2] -0.0226 _pdbx_refine_tls.S[3][3] 0.0232 _pdbx_refine_tls.S[1][2] 0.0537 _pdbx_refine_tls.S[1][3] -0.2980 _pdbx_refine_tls.S[2][3] -0.3009 _pdbx_refine_tls.S[2][1] 0.0224 _pdbx_refine_tls.S[3][1] -0.0433 _pdbx_refine_tls.S[3][2] -0.0878 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 13 X 83 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 X 101 X 101 all ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 X 102 X 104 all ? ? ? ? ? 'X-RAY DIFFRACTION' 4 1 C 1 C 97 all ? ? ? ? ? # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 IU P P N N 129 IU OP1 O N N 130 IU OP2 O N N 131 IU OP3 O N N 132 IU "O5'" O N N 133 IU "C5'" C N N 134 IU "C4'" C N R 135 IU "O4'" O N N 136 IU "C3'" C N S 137 IU "O3'" O N N 138 IU "C2'" C N R 139 IU "O2'" O N N 140 IU "C1'" C N R 141 IU N1 N N N 142 IU C2 C N N 143 IU O2 O N N 144 IU N3 N N N 145 IU C4 C N N 146 IU O4 O N N 147 IU C5 C N N 148 IU C6 C N N 149 IU I5 I N N 150 IU HOP2 H N N 151 IU HOP3 H N N 152 IU "H5'" H N N 153 IU "H5''" H N N 154 IU "H4'" H N N 155 IU "H3'" H N N 156 IU "HO3'" H N N 157 IU "H2'" H N N 158 IU "HO2'" H N N 159 IU "H1'" H N N 160 IU H3 H N N 161 IU H6 H N N 162 MG MG MG N N 163 U OP3 O N N 164 U P P N N 165 U OP1 O N N 166 U OP2 O N N 167 U "O5'" O N N 168 U "C5'" C N N 169 U "C4'" C N R 170 U "O4'" O N N 171 U "C3'" C N S 172 U "O3'" O N N 173 U "C2'" C N R 174 U "O2'" O N N 175 U "C1'" C N R 176 U N1 N N N 177 U C2 C N N 178 U O2 O N N 179 U N3 N N N 180 U C4 C N N 181 U O4 O N N 182 U C5 C N N 183 U C6 C N N 184 U HOP3 H N N 185 U HOP2 H N N 186 U "H5'" H N N 187 U "H5''" H N N 188 U "H4'" H N N 189 U "H3'" H N N 190 U "HO3'" H N N 191 U "H2'" H N N 192 U "HO2'" H N N 193 U "H1'" H N N 194 U H3 H N N 195 U H5 H N N 196 U H6 H N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 IU P OP1 doub N N 134 IU P OP2 sing N N 135 IU P OP3 sing N N 136 IU P "O5'" sing N N 137 IU OP2 HOP2 sing N N 138 IU OP3 HOP3 sing N N 139 IU "O5'" "C5'" sing N N 140 IU "C5'" "C4'" sing N N 141 IU "C5'" "H5'" sing N N 142 IU "C5'" "H5''" sing N N 143 IU "C4'" "O4'" sing N N 144 IU "C4'" "C3'" sing N N 145 IU "C4'" "H4'" sing N N 146 IU "O4'" "C1'" sing N N 147 IU "C3'" "O3'" sing N N 148 IU "C3'" "C2'" sing N N 149 IU "C3'" "H3'" sing N N 150 IU "O3'" "HO3'" sing N N 151 IU "C2'" "O2'" sing N N 152 IU "C2'" "C1'" sing N N 153 IU "C2'" "H2'" sing N N 154 IU "O2'" "HO2'" sing N N 155 IU "C1'" N1 sing N N 156 IU "C1'" "H1'" sing N N 157 IU N1 C2 sing N N 158 IU N1 C6 sing N N 159 IU C2 O2 doub N N 160 IU C2 N3 sing N N 161 IU N3 C4 sing N N 162 IU N3 H3 sing N N 163 IU C4 O4 doub N N 164 IU C4 C5 sing N N 165 IU C5 C6 doub N N 166 IU C5 I5 sing N N 167 IU C6 H6 sing N N 168 U OP3 P sing N N 169 U OP3 HOP3 sing N N 170 U P OP1 doub N N 171 U P OP2 sing N N 172 U P "O5'" sing N N 173 U OP2 HOP2 sing N N 174 U "O5'" "C5'" sing N N 175 U "C5'" "C4'" sing N N 176 U "C5'" "H5'" sing N N 177 U "C5'" "H5''" sing N N 178 U "C4'" "O4'" sing N N 179 U "C4'" "C3'" sing N N 180 U "C4'" "H4'" sing N N 181 U "O4'" "C1'" sing N N 182 U "C3'" "O3'" sing N N 183 U "C3'" "C2'" sing N N 184 U "C3'" "H3'" sing N N 185 U "O3'" "HO3'" sing N N 186 U "C2'" "O2'" sing N N 187 U "C2'" "C1'" sing N N 188 U "C2'" "H2'" sing N N 189 U "O2'" "HO2'" sing N N 190 U "C1'" N1 sing N N 191 U "C1'" "H1'" sing N N 192 U N1 C2 sing N N 193 U N1 C6 sing N N 194 U C2 O2 doub N N 195 U C2 N3 sing N N 196 U N3 C4 sing N N 197 U N3 H3 sing N N 198 U C4 O4 doub N N 199 U C4 C5 sing N N 200 U C5 C6 doub N N 201 U C5 H5 sing N N 202 U C6 H6 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5UZA 'double helix' 5UZA 'a-form double helix' 5UZA 'mismatched base pair' 5UZA 'internal loop' 5UZA 'triple helix' 5UZA 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 -0.182 -0.031 0.010 -1.038 -9.058 -4.331 1 X_G13:C83_X X 13 ? X 83 ? 19 1 1 A G 2 1_555 A C 70 1_555 -0.208 -0.214 -0.155 -5.844 -18.076 -0.741 2 X_G14:C82_X X 14 ? X 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.004 0.104 -0.254 -12.829 -11.546 3.174 3 X_G15:C81_X X 15 ? X 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 -0.556 -0.035 -0.198 -8.100 -8.730 -4.416 4 X_A16:U80_X X 16 ? X 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 0.461 -0.101 -0.110 -7.033 -4.937 -4.551 5 X_A17:U79_X X 17 ? X 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 -0.116 0.274 -0.274 -6.940 -8.127 5.347 6 X_G18:C78_X X 18 ? X 78 ? 19 1 1 A A 7 1_555 A U 65 1_555 0.189 0.001 0.097 -3.755 -12.222 5.101 7 X_A19:U77_X X 19 ? X 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 0.450 -0.050 0.080 -8.412 -21.198 8.990 8 X_U20:A76_X X 20 ? X 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.196 0.019 0.134 -2.252 -10.138 5.911 9 X_A21:U75_X X 21 ? X 75 ? 20 1 1 A U 35 1_555 A U 39 1_555 3.446 -0.500 0.676 35.952 36.557 -71.143 10 X_U47:U51_X X 47 ? X 51 ? ? ? 1 A U 10 1_555 A A 40 1_555 -0.311 -0.058 -0.276 16.255 -5.602 2.550 11 X_U22:A52_X X 22 ? X 52 ? 20 1 1 A G 34 1_555 A C 41 1_555 -0.151 -0.240 -0.321 -18.591 -0.038 -3.895 12 X_G46:C53_X X 46 ? X 53 ? 19 1 1 A A 33 1_555 A U 13 1_555 0.403 0.040 0.097 -8.205 -9.700 -1.273 13 X_A45:U25_X X 45 ? X 25 ? 20 1 1 A G 32 1_555 A C 14 1_555 0.012 0.065 -0.348 -10.702 -10.763 1.276 14 X_G44:C26_X X 44 ? X 26 ? 19 1 1 A G 31 1_555 A C 15 1_555 -0.141 -0.033 0.011 0.143 -3.873 1.429 15 X_G43:C27_X X 43 ? X 27 ? 19 1 1 A G 30 1_555 A IU 16 1_555 -2.260 -0.681 -0.097 -0.524 -13.217 -2.136 16 X_G42:IU28_X X 42 ? X 28 ? 28 1 1 A U 29 1_555 A A 17 1_555 0.267 -0.133 0.155 -1.682 -8.419 3.358 17 X_U41:A29_X X 41 ? X 29 ? 20 1 1 A U 28 1_555 A A 18 1_555 0.303 -0.048 0.359 -19.179 -13.997 11.870 18 X_U40:A30_X X 40 ? X 30 ? 20 1 1 A U 27 1_555 A IU 19 1_555 -2.577 -1.885 0.391 -8.573 -26.743 17.013 19 X_U39:IU31_X X 39 ? X 31 ? 16 1 1 A A 23 1_555 A A 52 1_555 -5.024 0.863 0.092 -0.430 2.309 -108.290 20 X_A35:A64_X X 35 ? X 64 ? 5 4 1 A C 49 1_555 A G 25 1_555 -0.286 0.077 0.609 -0.993 -15.971 -3.905 21 X_C61:G37_X X 61 ? X 37 ? 19 1 1 A U 22 1_555 A A 53 1_555 3.969 -1.901 -1.078 1.633 -9.863 -102.655 22 X_U34:A65_X X 34 ? X 65 ? 24 4 1 A G 26 1_555 A C 48 1_555 0.254 -0.008 0.473 18.133 -13.251 -2.305 23 X_G38:C60_X X 38 ? X 60 ? 19 1 1 A C 55 1_555 A G 47 1_555 0.240 -0.216 -0.179 14.124 -24.908 2.241 24 X_C67:G59_X X 67 ? X 59 ? 19 1 1 A U 56 1_555 A A 46 1_555 -0.353 -0.162 0.320 -3.615 -13.529 0.116 25 X_U68:A58_X X 68 ? X 58 ? 20 1 1 A C 57 1_555 A G 45 1_555 -0.159 0.018 -0.030 4.343 -14.510 -3.312 26 X_C69:G57_X X 69 ? X 57 ? 19 1 1 A U 58 1_555 A A 44 1_555 -0.443 -0.204 0.242 -4.387 -17.053 -3.931 27 X_U70:A56_X X 70 ? X 56 ? 20 1 1 A U 59 1_555 A A 43 1_555 0.011 -0.247 0.162 5.985 -9.920 -0.021 28 X_U71:A55_X X 71 ? X 55 ? 20 1 1 A G 60 1_555 A C 42 1_555 -0.151 -0.061 -0.013 9.944 -9.585 -0.946 29 X_G72:C54_X X 72 ? X 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 -0.064 -1.551 3.290 0.210 9.227 36.185 -3.584 0.126 2.823 14.567 -0.331 37.305 1 XX_G13G14:C82C83_XX X 13 ? X 83 ? X 14 ? X 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.510 -1.567 3.398 1.074 9.715 32.465 -4.216 -0.706 2.839 16.905 -1.869 33.866 2 XX_G14G15:C81C82_XX X 14 ? X 82 ? X 15 ? X 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 -0.063 -1.996 3.037 1.226 8.338 26.249 -5.899 0.383 2.300 17.787 -2.616 27.546 3 XX_G15A16:U80C81_XX X 15 ? X 81 ? X 16 ? X 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 -0.074 -1.533 3.221 -1.793 9.442 37.709 -3.373 -0.092 2.772 14.326 2.720 38.871 4 XX_A16A17:U79U80_XX X 16 ? X 80 ? X 17 ? X 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 0.411 -1.779 3.215 3.255 7.240 26.539 -5.333 -0.134 2.675 15.340 -6.896 27.680 5 XX_A17G18:C78U79_XX X 17 ? X 79 ? X 18 ? X 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.048 -1.405 3.166 -2.762 5.896 30.712 -3.627 -0.393 2.847 10.977 5.143 31.379 6 XX_G18A19:U77C78_XX X 18 ? X 78 ? X 19 ? X 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 0.476 -1.191 3.347 3.495 17.323 33.433 -3.976 -0.306 2.491 27.828 -5.614 37.698 7 XX_A19U20:A76U77_XX X 19 ? X 77 ? X 20 ? X 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.504 -1.466 2.988 2.561 17.419 26.960 -5.139 -0.545 1.777 33.241 -4.887 32.111 8 XX_U20A21:U75A76_XX X 20 ? X 76 ? X 21 ? X 75 ? 1 A A 9 1_555 A U 63 1_555 A U 35 1_555 A U 39 1_555 1.920 -0.495 6.617 -31.777 -157.789 30.164 2.957 -1.618 1.847 -85.779 17.275 161.619 9 XX_A21U47:U51U75_XX X 21 ? X 75 ? X 47 ? X 51 ? 1 A U 35 1_555 A U 39 1_555 A U 10 1_555 A A 40 1_555 0.144 0.849 -3.257 -1.830 -25.851 -3.931 -7.355 0.706 0.355 81.319 -5.757 -26.207 10 XX_U47U22:A52U51_XX X 47 ? X 51 ? X 22 ? X 52 ? 1 A U 10 1_555 A A 40 1_555 A G 34 1_555 A C 41 1_555 1.914 0.074 -2.555 1.332 -8.039 -41.497 -0.753 2.548 -2.555 11.216 1.858 -42.254 11 XX_U22G46:C53A52_XX X 22 ? X 52 ? X 46 ? X 53 ? 1 A G 34 1_555 A C 41 1_555 A A 33 1_555 A U 13 1_555 -2.578 0.570 -3.517 -13.263 -3.097 -49.979 -0.899 -1.907 -3.996 3.589 -15.371 -51.687 12 XX_G46A45:U25C53_XX X 46 ? X 53 ? X 45 ? X 25 ? 1 A A 33 1_555 A U 13 1_555 A G 32 1_555 A C 14 1_555 0.143 1.694 -3.143 2.552 -0.477 -33.618 -2.995 -0.151 -3.122 0.823 4.405 -33.715 13 XX_A45G44:C26U25_XX X 45 ? X 25 ? X 44 ? X 26 ? 1 A G 32 1_555 A C 14 1_555 A G 31 1_555 A C 15 1_555 -0.146 1.991 -3.588 -2.393 -5.670 -29.140 -5.112 0.238 -3.154 11.113 -4.691 -29.769 14 XX_G44G43:C27C26_XX X 44 ? X 26 ? X 43 ? X 27 ? 1 A G 31 1_555 A C 15 1_555 A G 30 1_555 A IU 16 1_555 -0.354 1.592 -3.338 2.844 -2.988 -38.311 -2.782 -0.889 -3.176 4.536 4.319 -38.524 15 XX_G43G42:IU28C27_XX X 43 ? X 27 ? X 42 ? X 28 ? 1 A G 30 1_555 A IU 16 1_555 A U 29 1_555 A A 17 1_555 0.084 1.578 -3.048 1.172 -9.317 -23.937 -5.767 -0.091 -2.283 21.437 2.696 -25.688 16 XX_G42U41:A29IU28_XX X 42 ? X 28 ? X 41 ? X 29 ? 1 A U 29 1_555 A A 17 1_555 A U 28 1_555 A A 18 1_555 0.781 1.935 -2.866 -2.412 -5.235 -18.843 -7.624 3.190 -2.139 15.526 -7.155 -19.697 17 XX_U41U40:A30A29_XX X 41 ? X 29 ? X 40 ? X 30 ? 1 A U 28 1_555 A A 18 1_555 A U 27 1_555 A IU 19 1_555 0.616 1.094 -3.565 -0.347 -5.236 -49.152 -1.726 0.765 -3.434 6.274 -0.416 -49.414 18 XX_U40U39:IU31A30_XX X 40 ? X 30 ? X 39 ? X 31 ? 1 A A 23 1_555 A A 52 1_555 A C 49 1_555 A G 25 1_555 3.637 0.204 -3.608 -1.917 -5.319 138.574 0.075 -1.932 -3.634 -2.843 1.024 138.627 19 XX_A35C61:G37A64_XX X 35 ? X 64 ? X 61 ? X 37 ? 1 A C 49 1_555 A G 25 1_555 A U 22 1_555 A A 53 1_555 -5.413 -4.690 0.905 -3.232 -25.601 -114.848 2.798 -3.185 0.143 15.088 -1.905 -116.687 20 XX_C61U34:A65G37_XX X 61 ? X 37 ? X 34 ? X 65 ? 1 A G 26 1_555 A C 48 1_555 A C 55 1_555 A G 47 1_555 -1.671 -0.262 3.210 0.391 0.600 52.733 -0.333 1.906 3.196 0.676 -0.440 52.738 21 XX_G38C67:G59C60_XX X 38 ? X 60 ? X 67 ? X 59 ? 1 A C 55 1_555 A G 47 1_555 A U 56 1_555 A A 46 1_555 -0.349 -1.657 3.665 -4.339 6.904 33.125 -4.009 -0.147 3.282 11.887 7.470 34.087 22 XX_C67U68:A58G59_XX X 67 ? X 59 ? X 68 ? X 58 ? 1 A U 56 1_555 A A 46 1_555 A C 57 1_555 A G 45 1_555 -0.363 -1.505 3.084 1.310 -1.825 30.624 -2.501 0.931 3.149 -3.450 -2.476 30.705 23 XX_U68C69:G57A58_XX X 68 ? X 58 ? X 69 ? X 57 ? 1 A C 57 1_555 A G 45 1_555 A U 58 1_555 A A 44 1_555 -0.421 -1.514 3.398 -3.406 8.472 31.264 -4.162 0.164 2.927 15.315 6.158 32.538 24 XX_C69U70:A56G57_XX X 69 ? X 57 ? X 70 ? X 56 ? 1 A U 58 1_555 A A 44 1_555 A U 59 1_555 A A 43 1_555 0.246 -1.048 3.012 -1.586 2.137 35.205 -2.016 -0.619 2.932 3.527 2.618 35.302 25 XX_U70U71:A55A56_XX X 70 ? X 56 ? X 71 ? X 55 ? 1 A U 59 1_555 A A 43 1_555 A G 60 1_555 A C 42 1_555 -0.015 -1.348 3.118 1.652 8.287 31.407 -3.718 0.289 2.680 14.972 -2.985 32.496 26 XX_U71G72:C54A55_XX X 71 ? X 55 ? X 72 ? X 54 ? # _atom_sites.entry_id 5UZA _atom_sites.fract_transf_matrix[1][1] 0.020414 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006597 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040429 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H I MG N O P # loop_