HEADER DNA 26-FEB-17 5UZI TITLE INSIGHTS INTO WATSON-CRICK/HOOGSTEEN BREATHING DYNAMICS AND DAMAGE TITLE 2 REPAIR FROM THE SOLUTION STRUCTURE AND DYNAMIC ENSEMBLE OF DNA TITLE 3 DUPLEXES CONTAINING M1A - A6-DNAM1A16 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*TP*TP*TP*TP*TP*GP*GP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*CP*CP*(M1A)P*AP*AP*AP*AP*AP*TP*CP*G)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS HOOGSTEEN BASE PAIRS, DNA STRUCTURE AND DYNAMICS, N1-METHYLADENINE, KEYWDS 2 DAMAGE RECOGNITION AND REPAIR, NMR STRUCTURE AND DYNAMIC ENSEMBLES, KEYWDS 3 DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.SATHYAMOORTHY,H.SHI,Y.XUE,H.M.AL-HASHIMI REVDAT 7 15-MAY-24 5UZI 1 REMARK REVDAT 6 14-JUN-23 5UZI 1 REMARK REVDAT 5 01-JAN-20 5UZI 1 REMARK REVDAT 4 13-SEP-17 5UZI 1 REMARK REVDAT 3 31-MAY-17 5UZI 1 JRNL REVDAT 2 26-APR-17 5UZI 1 JRNL REVDAT 1 05-APR-17 5UZI 0 JRNL AUTH B.SATHYAMOORTHY,H.SHI,H.ZHOU,Y.XUE,A.RANGADURAI, JRNL AUTH 2 D.K.MERRIMAN,H.M.AL-HASHIMI JRNL TITL INSIGHTS INTO WATSON-CRICK/HOOGSTEEN BREATHING DYNAMICS AND JRNL TITL 2 DAMAGE REPAIR FROM THE SOLUTION STRUCTURE AND DYNAMIC JRNL TITL 3 ENSEMBLE OF DNA DUPLEXES CONTAINING M1A. JRNL REF NUCLEIC ACIDS RES. V. 45 5586 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28369571 JRNL DOI 10.1093/NAR/GKX186 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 3.0 MM DNA (5' REMARK 210 -D(*CP*GP*AP*TP*TP*TP*TP*TP*TP*GP*GP*C)-3'), 90% H2O/10% D2O; REMARK 210 3.0 MM DNA (5'-D(*GP*CP*CP*(M1A)P*AP*AP*AP*AP*AP*TP*CP*G)-3'), REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N SOFAST-HMQC; 2D 1H-13C REMARK 210 SOFAST-HMQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 2D DQF-COSY; 2D 1H-31P REMARK 210 HSQC; 2D 1H-13C TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY NMRFAM, VNMR, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30255 RELATED DB: BMRB REMARK 900 INSIGHTS INTO WATSON-CRICK/HOOGSTEEN BREATHING DYNAMICS AND DAMAGE REMARK 900 REPAIR FROM THE SOLUTION STRUCTURE AND DYNAMIC ENSEMBLE OF DNA REMARK 900 DUPLEXES CONTAINING M1A - A6-DNAM1A16 STRUCTURE REMARK 900 RELATED ID: 5UZD RELATED DB: PDB REMARK 900 RELATED ID: 5UZF RELATED DB: PDB DBREF 5UZI A 1 12 PDB 5UZI 5UZI 1 12 DBREF 5UZI B 13 24 PDB 5UZI 5UZI 13 24 SEQRES 1 A 12 DC DG DA DT DT DT DT DT DT DG DG DC SEQRES 1 B 12 DG DC DC MA7 DA DA DA DA DA DT DC DG HET MA7 B 16 36 HETNAM MA7 1N-METHYLADENOSINE-5'-MONOPHOSPHATE FORMUL 2 MA7 C11 H17 N5 O6 P 1+ LINK O3' DC B 15 P MA7 B 16 1555 1555 1.61 LINK O3' MA7 B 16 P DA B 17 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1