HEADER HYDROLASE/DNA 28-FEB-17 5V07 TITLE CRYSTAL STRUCTURE OF HUMAN EXONUCLEASE 1 EXO1 (D173A) IN COMPLEX WITH TITLE 2 5' RECESSED-END DNA (RV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE 1; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: UNP RESIDUES 1-352; COMPND 5 SYNONYM: HEXO1, EXONUCLEASE I, HEXOI; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXO1, EXOI, HEX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,L.S.BEESE REVDAT 6 04-OCT-23 5V07 1 LINK REVDAT 5 04-DEC-19 5V07 1 REMARK REVDAT 4 13-SEP-17 5V07 1 REMARK REVDAT 3 21-JUN-17 5V07 1 JRNL REVDAT 2 07-JUN-17 5V07 1 JRNL REVDAT 1 24-MAY-17 5V07 0 JRNL AUTH Y.SHI,H.W.HELLINGA,L.S.BEESE JRNL TITL INTERPLAY OF CATALYSIS, FIDELITY, THREADING, AND JRNL TITL 2 PROCESSIVITY IN THE EXO- AND ENDONUCLEOLYTIC REACTIONS OF JRNL TITL 3 HUMAN EXONUCLEASE I. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6010 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533382 JRNL DOI 10.1073/PNAS.1704845114 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 22817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9240 - 5.0188 0.95 2093 187 0.1499 0.2026 REMARK 3 2 5.0188 - 3.9851 0.98 2031 178 0.1412 0.1755 REMARK 3 3 3.9851 - 3.4818 0.99 2006 178 0.1599 0.2132 REMARK 3 4 3.4818 - 3.1636 1.00 2005 179 0.1849 0.2133 REMARK 3 5 3.1636 - 2.9370 1.00 1996 176 0.2066 0.2427 REMARK 3 6 2.9370 - 2.7639 1.00 1988 176 0.2325 0.2554 REMARK 3 7 2.7639 - 2.6255 1.00 1969 174 0.2344 0.2992 REMARK 3 8 2.6255 - 2.5112 0.95 1886 165 0.2480 0.3037 REMARK 3 9 2.5112 - 2.4146 0.80 1575 137 0.2379 0.3087 REMARK 3 10 2.4146 - 2.3313 0.64 1250 109 0.2524 0.2915 REMARK 3 11 2.3313 - 2.2584 0.49 953 89 0.2433 0.3434 REMARK 3 12 2.2584 - 2.1938 0.35 690 61 0.2218 0.2475 REMARK 3 13 2.1938 - 2.1361 0.27 520 46 0.2263 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3298 REMARK 3 ANGLE : 1.036 4510 REMARK 3 CHIRALITY : 0.043 508 REMARK 3 PLANARITY : 0.004 500 REMARK 3 DIHEDRAL : 19.042 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7362 11.6587 -19.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.7214 T22: 0.5326 REMARK 3 T33: 0.8705 T12: 0.1117 REMARK 3 T13: -0.1335 T23: 0.2194 REMARK 3 L TENSOR REMARK 3 L11: 8.0314 L22: 6.9136 REMARK 3 L33: 3.1943 L12: -0.7444 REMARK 3 L13: -2.0366 L23: 4.4674 REMARK 3 S TENSOR REMARK 3 S11: 1.2246 S12: 0.1733 S13: 0.2801 REMARK 3 S21: -1.0371 S22: 1.1028 S23: 1.0276 REMARK 3 S31: -0.3001 S32: -1.0885 S33: -2.0466 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9772 1.2472 -7.9216 REMARK 3 T TENSOR REMARK 3 T11: 0.8569 T22: 0.8236 REMARK 3 T33: 1.1315 T12: -0.0027 REMARK 3 T13: 0.0367 T23: 0.3917 REMARK 3 L TENSOR REMARK 3 L11: 5.8498 L22: 3.3940 REMARK 3 L33: 2.8628 L12: -3.0625 REMARK 3 L13: 0.0000 L23: -2.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.6036 S12: -0.5272 S13: -0.4540 REMARK 3 S21: 1.3146 S22: 0.2920 S23: 1.5949 REMARK 3 S31: -0.1942 S32: -1.1041 S33: -0.8916 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 10:13) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2421 -18.0193 -5.9807 REMARK 3 T TENSOR REMARK 3 T11: 1.4933 T22: 0.8092 REMARK 3 T33: 1.3977 T12: -0.3865 REMARK 3 T13: -0.4477 T23: 0.3597 REMARK 3 L TENSOR REMARK 3 L11: 2.7225 L22: 2.8310 REMARK 3 L33: 3.5033 L12: -0.1240 REMARK 3 L13: -2.8443 L23: 1.3524 REMARK 3 S TENSOR REMARK 3 S11: -0.3238 S12: 0.7989 S13: -1.2232 REMARK 3 S21: -1.1123 S22: 1.3818 S23: 2.1866 REMARK 3 S31: 1.0168 S32: -1.8547 S33: -0.7535 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7141 -2.6070 -7.6455 REMARK 3 T TENSOR REMARK 3 T11: 0.5311 T22: 0.4780 REMARK 3 T33: 0.5507 T12: 0.0273 REMARK 3 T13: -0.0068 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 6.8012 L22: 6.9413 REMARK 3 L33: 5.6708 L12: -2.4390 REMARK 3 L13: -0.6496 L23: -4.9855 REMARK 3 S TENSOR REMARK 3 S11: 0.6010 S12: -0.0977 S13: -0.2039 REMARK 3 S21: 0.4709 S22: 0.5833 S23: 0.8087 REMARK 3 S31: -0.7081 S32: -0.2882 S33: -1.1979 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:10) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4831 8.0246 -17.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.8411 T22: 0.7304 REMARK 3 T33: 1.5535 T12: 0.1668 REMARK 3 T13: -0.3605 T23: 0.9235 REMARK 3 L TENSOR REMARK 3 L11: 6.3825 L22: 6.3226 REMARK 3 L33: 1.9146 L12: -5.3319 REMARK 3 L13: 2.4796 L23: -3.0931 REMARK 3 S TENSOR REMARK 3 S11: 0.8157 S12: 0.8707 S13: -0.6009 REMARK 3 S21: -0.3274 S22: 0.0809 S23: 2.3906 REMARK 3 S31: -0.0826 S32: -0.9549 S33: -0.4965 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN Z AND RESID 2:21) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4270 -5.1778 -20.0197 REMARK 3 T TENSOR REMARK 3 T11: 0.4790 T22: 0.5090 REMARK 3 T33: 0.4141 T12: -0.0329 REMARK 3 T13: -0.0184 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 4.3865 L22: 2.5422 REMARK 3 L33: 5.7709 L12: -1.8150 REMARK 3 L13: 3.1496 L23: -2.8927 REMARK 3 S TENSOR REMARK 3 S11: 0.2995 S12: 0.7271 S13: -0.3120 REMARK 3 S21: -1.2899 S22: -0.2624 S23: 0.8295 REMARK 3 S31: 0.5463 S32: 0.1269 S33: 0.0174 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN Z AND RESID 22:39) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6522 -12.7126 -6.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.5806 T22: 0.3073 REMARK 3 T33: 0.4326 T12: 0.0634 REMARK 3 T13: -0.1322 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 7.4025 L22: 3.6674 REMARK 3 L33: 5.5661 L12: -1.1698 REMARK 3 L13: -3.4668 L23: 1.2767 REMARK 3 S TENSOR REMARK 3 S11: 0.4697 S12: 0.5610 S13: -0.4476 REMARK 3 S21: 0.1043 S22: -0.2982 S23: 0.1114 REMARK 3 S31: 0.5032 S32: -0.2732 S33: -0.1127 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN Z AND RESID 40:53) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3291 -16.3393 8.0498 REMARK 3 T TENSOR REMARK 3 T11: 1.1416 T22: 0.5841 REMARK 3 T33: 0.8169 T12: -0.1588 REMARK 3 T13: 0.0659 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 4.4734 L22: 9.1335 REMARK 3 L33: 3.5277 L12: 2.2036 REMARK 3 L13: -2.9367 L23: -5.0319 REMARK 3 S TENSOR REMARK 3 S11: 0.2401 S12: -0.5347 S13: -0.4527 REMARK 3 S21: -0.1110 S22: 0.0996 S23: 1.3523 REMARK 3 S31: 1.6804 S32: -0.0808 S33: -0.3387 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN Z AND RESID 54:72) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3659 -20.8165 -5.0859 REMARK 3 T TENSOR REMARK 3 T11: 1.3030 T22: 0.3119 REMARK 3 T33: 0.5711 T12: 0.0854 REMARK 3 T13: -0.1394 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 2.4834 L22: 3.6908 REMARK 3 L33: 3.1300 L12: -0.3018 REMARK 3 L13: -0.6465 L23: 0.9184 REMARK 3 S TENSOR REMARK 3 S11: 0.3065 S12: 0.1539 S13: -0.5419 REMARK 3 S21: -0.1007 S22: -0.1382 S23: -0.0075 REMARK 3 S31: 1.3457 S32: 0.1207 S33: -0.1198 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN Z AND RESID 73:84) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8029 -3.8761 1.9228 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.4614 REMARK 3 T33: 0.3244 T12: -0.0250 REMARK 3 T13: -0.0798 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 2.5760 L22: 9.1356 REMARK 3 L33: 2.8199 L12: 0.1053 REMARK 3 L13: 0.3433 L23: -2.5907 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -0.2431 S13: 0.0594 REMARK 3 S21: 0.7896 S22: 0.2062 S23: 0.4110 REMARK 3 S31: 0.0047 S32: 0.4189 S33: -0.2974 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN Z AND RESID 85:100) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8027 3.3665 5.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.5056 T22: 0.3978 REMARK 3 T33: 0.5833 T12: 0.0498 REMARK 3 T13: 0.0362 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 5.6205 L22: 4.0679 REMARK 3 L33: 8.8445 L12: 4.7644 REMARK 3 L13: -4.3134 L23: -4.1179 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.6712 S13: 1.0729 REMARK 3 S21: 0.5957 S22: 0.1664 S23: 0.5531 REMARK 3 S31: -1.0171 S32: -0.6044 S33: -0.1626 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN Z AND RESID 101:124) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6631 -8.3291 5.8025 REMARK 3 T TENSOR REMARK 3 T11: 0.8503 T22: 0.8623 REMARK 3 T33: 1.0739 T12: -0.1396 REMARK 3 T13: 0.1454 T23: 0.1954 REMARK 3 L TENSOR REMARK 3 L11: 6.1539 L22: 2.1908 REMARK 3 L33: 9.1148 L12: 3.3975 REMARK 3 L13: -3.0999 L23: -1.3675 REMARK 3 S TENSOR REMARK 3 S11: 0.4298 S12: 0.2378 S13: -0.4278 REMARK 3 S21: 0.6596 S22: 0.3050 S23: 1.3477 REMARK 3 S31: 0.4647 S32: -2.0539 S33: -0.6682 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN Z AND RESID 125:142) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3046 -16.3763 6.0695 REMARK 3 T TENSOR REMARK 3 T11: 1.0365 T22: 0.4291 REMARK 3 T33: 0.5184 T12: 0.0964 REMARK 3 T13: -0.1045 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.3473 L22: 6.6518 REMARK 3 L33: 7.2567 L12: -4.8818 REMARK 3 L13: -5.0426 L23: 4.5754 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.7675 S13: -0.5860 REMARK 3 S21: 0.4015 S22: 0.2804 S23: -0.3270 REMARK 3 S31: 1.6659 S32: 0.8994 S33: -0.2283 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN Z AND RESID 143:165) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1332 -4.8601 -3.5235 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.4520 REMARK 3 T33: 0.3703 T12: 0.0828 REMARK 3 T13: -0.1017 T23: -0.1055 REMARK 3 L TENSOR REMARK 3 L11: 7.5399 L22: 4.1007 REMARK 3 L33: 2.1182 L12: 1.8073 REMARK 3 L13: -3.0447 L23: -2.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.2309 S13: -0.1799 REMARK 3 S21: 0.2214 S22: 0.1142 S23: -0.4988 REMARK 3 S31: 0.5692 S32: 0.5700 S33: -0.1074 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN Z AND RESID 166:184) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4724 -3.6782 -12.0989 REMARK 3 T TENSOR REMARK 3 T11: 0.5224 T22: 0.3603 REMARK 3 T33: 0.3665 T12: 0.0235 REMARK 3 T13: -0.0486 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 2.2475 L22: 5.7576 REMARK 3 L33: 3.8387 L12: 0.6275 REMARK 3 L13: -0.4551 L23: -0.6612 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.3734 S13: -0.1519 REMARK 3 S21: -0.3052 S22: 0.0872 S23: -0.2288 REMARK 3 S31: 0.0258 S32: 0.0850 S33: -0.0656 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN Z AND RESID 185:193) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2821 -16.2727 -15.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.9630 T22: 0.4922 REMARK 3 T33: 0.6043 T12: -0.1820 REMARK 3 T13: -0.0647 T23: -0.1590 REMARK 3 L TENSOR REMARK 3 L11: 6.2962 L22: 6.1319 REMARK 3 L33: 4.9153 L12: 1.0152 REMARK 3 L13: -1.0908 L23: -4.7707 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.1048 S13: -0.6479 REMARK 3 S21: -0.9067 S22: -0.3769 S23: 0.8598 REMARK 3 S31: 1.5044 S32: -0.3329 S33: 0.2019 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN Z AND RESID 194:213) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7253 3.8135 -23.2374 REMARK 3 T TENSOR REMARK 3 T11: 0.6511 T22: 0.6388 REMARK 3 T33: 0.3760 T12: 0.0414 REMARK 3 T13: -0.0243 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 7.0689 L22: 2.1754 REMARK 3 L33: 6.0664 L12: -0.4867 REMARK 3 L13: -1.8935 L23: -1.7515 REMARK 3 S TENSOR REMARK 3 S11: 0.5176 S12: 0.8697 S13: 0.3731 REMARK 3 S21: -0.8260 S22: -0.9661 S23: -0.6057 REMARK 3 S31: 0.1260 S32: -0.1747 S33: 0.3460 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN Z AND RESID 214:228) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9342 10.9198 -11.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.3119 REMARK 3 T33: 0.3546 T12: -0.0147 REMARK 3 T13: 0.0008 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 7.3784 L22: 6.2284 REMARK 3 L33: 2.0625 L12: -2.6286 REMARK 3 L13: -0.7046 L23: 0.7955 REMARK 3 S TENSOR REMARK 3 S11: 0.3372 S12: 0.3224 S13: 0.0535 REMARK 3 S21: -0.0943 S22: -0.4186 S23: 0.3238 REMARK 3 S31: -0.5028 S32: -0.2794 S33: 0.0564 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN Z AND RESID 229:244) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6790 15.9073 -18.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.5334 T22: 0.3428 REMARK 3 T33: 0.5571 T12: 0.1527 REMARK 3 T13: -0.1189 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 7.3744 L22: 6.1941 REMARK 3 L33: 6.0821 L12: 1.9599 REMARK 3 L13: -2.0178 L23: -1.5117 REMARK 3 S TENSOR REMARK 3 S11: 0.4254 S12: 0.9990 S13: 0.0178 REMARK 3 S21: -0.2271 S22: 0.0072 S23: 0.6475 REMARK 3 S31: -1.0667 S32: -0.4870 S33: -0.4398 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN Z AND RESID 245:270) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6771 24.6310 -15.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.7933 T22: 0.4872 REMARK 3 T33: 0.7106 T12: 0.0222 REMARK 3 T13: 0.0245 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.9589 L22: 2.5304 REMARK 3 L33: 7.4507 L12: 0.4445 REMARK 3 L13: 4.2557 L23: -1.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.5331 S12: 0.0883 S13: 1.0917 REMARK 3 S21: -0.2356 S22: -0.1134 S23: 0.1875 REMARK 3 S31: -1.5592 S32: 0.2430 S33: 0.5789 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN Z AND RESID 271:287) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2814 12.8257 -4.0673 REMARK 3 T TENSOR REMARK 3 T11: 0.4420 T22: 0.4259 REMARK 3 T33: 0.3549 T12: -0.0543 REMARK 3 T13: 0.0169 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 4.2521 L22: 5.9937 REMARK 3 L33: 4.2580 L12: -3.2730 REMARK 3 L13: 2.8154 L23: -4.5056 REMARK 3 S TENSOR REMARK 3 S11: -0.4035 S12: -0.6299 S13: 0.3841 REMARK 3 S21: 0.6739 S22: 0.6084 S23: -0.1267 REMARK 3 S31: -0.8100 S32: 0.0628 S33: -0.1431 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN Z AND RESID 288:298) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7486 -2.1371 1.8771 REMARK 3 T TENSOR REMARK 3 T11: 0.4582 T22: 0.8087 REMARK 3 T33: 0.5798 T12: 0.1377 REMARK 3 T13: -0.0644 T23: -0.1087 REMARK 3 L TENSOR REMARK 3 L11: 7.7152 L22: 5.0295 REMARK 3 L33: 4.4566 L12: -5.1018 REMARK 3 L13: 3.9597 L23: -4.5398 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: 0.0060 S13: -0.1449 REMARK 3 S21: -0.3268 S22: -0.3378 S23: -1.1233 REMARK 3 S31: 0.4435 S32: 1.8277 S33: 0.4844 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN Z AND RESID 299:309) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7970 14.5690 -1.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.7330 T22: 0.8391 REMARK 3 T33: 0.8488 T12: -0.2702 REMARK 3 T13: -0.0285 T23: -0.2352 REMARK 3 L TENSOR REMARK 3 L11: 3.2775 L22: 3.7555 REMARK 3 L33: 5.1779 L12: -2.6210 REMARK 3 L13: -4.0482 L23: 2.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.4439 S12: -0.6049 S13: 1.1846 REMARK 3 S21: -0.2652 S22: 0.4745 S23: -1.0632 REMARK 3 S31: -2.3087 S32: 2.6115 S33: -0.7022 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN Z AND RESID 310:329) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6374 0.4954 9.0371 REMARK 3 T TENSOR REMARK 3 T11: 0.5751 T22: 0.6028 REMARK 3 T33: 0.3588 T12: -0.0034 REMARK 3 T13: -0.1181 T23: -0.0830 REMARK 3 L TENSOR REMARK 3 L11: 3.2855 L22: 2.8841 REMARK 3 L33: 6.2102 L12: -2.6823 REMARK 3 L13: 2.2279 L23: -3.7013 REMARK 3 S TENSOR REMARK 3 S11: -0.3702 S12: -0.7082 S13: 0.1552 REMARK 3 S21: 1.1714 S22: 0.2858 S23: -0.9318 REMARK 3 S31: 0.0024 S32: 0.5467 S33: 0.0531 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN Z AND RESID 330:345) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2521 -10.6516 14.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.9728 T22: 0.8892 REMARK 3 T33: 0.6022 T12: -0.0020 REMARK 3 T13: -0.0857 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.0623 L22: 7.6307 REMARK 3 L33: 6.5439 L12: 0.4652 REMARK 3 L13: 2.2583 L23: -3.1031 REMARK 3 S TENSOR REMARK 3 S11: 0.2560 S12: -1.2682 S13: -0.2864 REMARK 3 S21: 1.1444 S22: -0.2715 S23: 0.1160 REMARK 3 S31: 0.6801 S32: 0.8764 S33: 0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 7.0, 10 MM REMARK 280 POTASSIUM CHLORIDE, 2-4% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.53350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.91850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.91850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.30025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.91850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.91850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.76675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.91850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.91850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.30025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.91850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.91850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.76675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.53350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 1 REMARK 465 ALA Z 346 REMARK 465 MET Z 347 REMARK 465 PRO Z 348 REMARK 465 ALA Z 349 REMARK 465 HIS Z 350 REMARK 465 SER Z 351 REMARK 465 ARG Z 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 1 P DT B 1 OP3 -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR Z 149 -122.97 -130.79 REMARK 500 LEU Z 227 114.53 -166.47 REMARK 500 ASP Z 303 31.86 -92.89 REMARK 500 ASP Z 340 32.88 -140.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD2 REMARK 620 2 ASP Z 171 OD2 80.8 REMARK 620 3 HOH Z 524 O 94.1 173.4 REMARK 620 4 HOH Z 563 O 174.0 99.0 86.5 REMARK 620 5 HOH Z 583 O 90.2 92.6 91.6 83.8 REMARK 620 6 DC B 2 OP1 95.4 92.7 83.6 90.6 172.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD1 REMARK 620 2 HOH Z 505 O 93.0 REMARK 620 3 HOH Z 534 O 99.8 85.8 REMARK 620 4 HOH Z 539 O 92.4 171.7 87.1 REMARK 620 5 DT B 1 O3' 172.5 87.3 87.7 88.1 REMARK 620 6 DC B 2 OP1 107.7 92.3 152.6 92.0 64.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA Z 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Z 222 O REMARK 620 2 SER Z 229 OG 97.3 REMARK 620 3 ILE Z 233 O 91.7 77.3 REMARK 620 4 DT A 4 OP2 153.4 107.3 84.0 REMARK 620 5 HOH A 115 O 106.8 90.0 158.8 83.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH Z 510 O REMARK 620 2 HOH Z 601 O 99.0 REMARK 620 3 DT B 1 OP1 82.3 171.9 REMARK 620 4 HOH B 205 O 174.0 86.9 91.9 REMARK 620 5 HOH B 212 O 90.2 97.2 90.8 88.4 REMARK 620 6 HOH B 213 O 99.8 79.5 92.4 81.8 169.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA Z 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UZV RELATED DB: PDB REMARK 900 RELATED ID: 5V04 RELATED DB: PDB REMARK 900 RELATED ID: 5V05 RELATED DB: PDB REMARK 900 RELATED ID: 5V06 RELATED DB: PDB REMARK 900 RELATED ID: 5V08 RELATED DB: PDB REMARK 900 RELATED ID: 5V09 RELATED DB: PDB REMARK 900 RELATED ID: 5V0A RELATED DB: PDB REMARK 900 RELATED ID: 5V0B RELATED DB: PDB REMARK 900 RELATED ID: 5V0C RELATED DB: PDB REMARK 900 RELATED ID: 5V0D RELATED DB: PDB REMARK 900 RELATED ID: 5V0E RELATED DB: PDB DBREF 5V07 Z 1 352 UNP Q9UQ84 EXO1_HUMAN 1 352 DBREF 5V07 A 1 13 PDB 5V07 5V07 1 13 DBREF 5V07 B 1 10 PDB 5V07 5V07 1 10 SEQADV 5V07 ALA Z 173 UNP Q9UQ84 ASP 173 ENGINEERED MUTATION SEQRES 1 Z 352 MET GLY ILE GLN GLY LEU LEU GLN PHE ILE LYS GLU ALA SEQRES 2 Z 352 SER GLU PRO ILE HIS VAL ARG LYS TYR LYS GLY GLN VAL SEQRES 3 Z 352 VAL ALA VAL ASP THR TYR CYS TRP LEU HIS LYS GLY ALA SEQRES 4 Z 352 ILE ALA CYS ALA GLU LYS LEU ALA LYS GLY GLU PRO THR SEQRES 5 Z 352 ASP ARG TYR VAL GLY PHE CYS MET LYS PHE VAL ASN MET SEQRES 6 Z 352 LEU LEU SER HIS GLY ILE LYS PRO ILE LEU VAL PHE ASP SEQRES 7 Z 352 GLY CYS THR LEU PRO SER LYS LYS GLU VAL GLU ARG SER SEQRES 8 Z 352 ARG ARG GLU ARG ARG GLN ALA ASN LEU LEU LYS GLY LYS SEQRES 9 Z 352 GLN LEU LEU ARG GLU GLY LYS VAL SER GLU ALA ARG GLU SEQRES 10 Z 352 CYS PHE THR ARG SER ILE ASN ILE THR HIS ALA MET ALA SEQRES 11 Z 352 HIS LYS VAL ILE LYS ALA ALA ARG SER GLN GLY VAL ASP SEQRES 12 Z 352 CYS LEU VAL ALA PRO TYR GLU ALA ASP ALA GLN LEU ALA SEQRES 13 Z 352 TYR LEU ASN LYS ALA GLY ILE VAL GLN ALA ILE ILE THR SEQRES 14 Z 352 GLU ASP SER ALA LEU LEU ALA PHE GLY CYS LYS LYS VAL SEQRES 15 Z 352 ILE LEU LYS MET ASP GLN PHE GLY ASN GLY LEU GLU ILE SEQRES 16 Z 352 ASP GLN ALA ARG LEU GLY MET CYS ARG GLN LEU GLY ASP SEQRES 17 Z 352 VAL PHE THR GLU GLU LYS PHE ARG TYR MET CYS ILE LEU SEQRES 18 Z 352 SER GLY CYS ASP TYR LEU SER SER LEU ARG GLY ILE GLY SEQRES 19 Z 352 LEU ALA LYS ALA CYS LYS VAL LEU ARG LEU ALA ASN ASN SEQRES 20 Z 352 PRO ASP ILE VAL LYS VAL ILE LYS LYS ILE GLY HIS TYR SEQRES 21 Z 352 LEU LYS MET ASN ILE THR VAL PRO GLU ASP TYR ILE ASN SEQRES 22 Z 352 GLY PHE ILE ARG ALA ASN ASN THR PHE LEU TYR GLN LEU SEQRES 23 Z 352 VAL PHE ASP PRO ILE LYS ARG LYS LEU ILE PRO LEU ASN SEQRES 24 Z 352 ALA TYR GLU ASP ASP VAL ASP PRO GLU THR LEU SER TYR SEQRES 25 Z 352 ALA GLY GLN TYR VAL ASP ASP SER ILE ALA LEU GLN ILE SEQRES 26 Z 352 ALA LEU GLY ASN LYS ASP ILE ASN THR PHE GLU GLN ILE SEQRES 27 Z 352 ASP ASP TYR ASN PRO ASP THR ALA MET PRO ALA HIS SER SEQRES 28 Z 352 ARG SEQRES 1 A 13 DC DG DC DT DA DG DT DC DG DA DC DA DT SEQRES 1 B 10 DT DC DG DA DC DT DA DG DC DG HET MN Z 401 1 HET MN Z 402 1 HET NA Z 403 1 HET MN B 101 1 HET MN B 102 1 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION FORMUL 4 MN 4(MN 2+) FORMUL 6 NA NA 1+ FORMUL 9 HOH *132(H2 O) HELIX 1 AA1 GLY Z 5 ILE Z 10 1 6 HELIX 2 AA2 ARG Z 20 LYS Z 23 5 4 HELIX 3 AA3 THR Z 31 ALA Z 41 1 11 HELIX 4 AA4 CYS Z 42 GLY Z 49 1 8 HELIX 5 AA5 ASP Z 53 HIS Z 69 1 17 HELIX 6 AA6 LEU Z 82 SER Z 84 5 3 HELIX 7 AA7 LYS Z 85 ARG Z 108 1 24 HELIX 8 AA8 LYS Z 111 ARG Z 121 1 11 HELIX 9 AA9 THR Z 126 GLN Z 140 1 15 HELIX 10 AB1 GLU Z 150 ALA Z 161 1 12 HELIX 11 AB2 ASP Z 171 GLY Z 178 5 8 HELIX 12 AB3 ALA Z 198 GLY Z 207 5 10 HELIX 13 AB4 THR Z 211 SER Z 222 1 12 HELIX 14 AB5 GLY Z 234 ALA Z 245 1 12 HELIX 15 AB6 ASP Z 249 LYS Z 256 1 8 HELIX 16 AB7 LYS Z 256 LYS Z 262 1 7 HELIX 17 AB8 PRO Z 268 GLN Z 285 1 18 HELIX 18 AB9 ASP Z 306 GLY Z 314 5 9 HELIX 19 AC1 ASP Z 318 LEU Z 327 1 10 SHEET 1 AA1 7 SER Z 14 HIS Z 18 0 SHEET 2 AA1 7 ASN Z 191 ASP Z 196 -1 O GLY Z 192 N ILE Z 17 SHEET 3 AA1 7 LYS Z 181 LEU Z 184 -1 N LEU Z 184 O LEU Z 193 SHEET 4 AA1 7 ALA Z 166 ILE Z 168 1 N ILE Z 167 O ILE Z 183 SHEET 5 AA1 7 VAL Z 26 ASP Z 30 1 N ASP Z 30 O ILE Z 168 SHEET 6 AA1 7 LYS Z 72 PHE Z 77 1 O ILE Z 74 N VAL Z 29 SHEET 7 AA1 7 ASP Z 143 VAL Z 146 1 O LEU Z 145 N LEU Z 75 SHEET 1 AA2 2 LEU Z 286 ASP Z 289 0 SHEET 2 AA2 2 LYS Z 294 PRO Z 297 -1 O LYS Z 294 N ASP Z 289 LINK SG CYS Z 80 MN MN Z 402 1555 1555 2.42 LINK OD2 ASP Z 152 MN MN Z 401 1555 1555 2.10 LINK OD1 ASP Z 152 MN MN B 101 1555 1555 2.10 LINK OD2 ASP Z 171 MN MN Z 401 1555 1555 2.21 LINK O SER Z 222 NA NA Z 403 1555 1555 2.53 LINK OG SER Z 229 NA NA Z 403 1555 1555 2.58 LINK O ILE Z 233 NA NA Z 403 1555 1555 2.46 LINK MN MN Z 401 O HOH Z 524 1555 1555 2.31 LINK MN MN Z 401 O HOH Z 563 1555 1555 2.20 LINK MN MN Z 401 O HOH Z 583 1555 1555 2.23 LINK MN MN Z 401 OP1 DC B 2 1555 1555 2.09 LINK NA NA Z 403 OP2 DT A 4 1555 1555 2.52 LINK NA NA Z 403 O HOH A 115 1555 1555 2.33 LINK O HOH Z 505 MN MN B 101 1555 1555 2.24 LINK O HOH Z 510 MN MN B 102 1555 1555 2.15 LINK O HOH Z 534 MN MN B 101 1555 1555 2.15 LINK O HOH Z 539 MN MN B 101 1555 1555 2.29 LINK O HOH Z 601 MN MN B 102 1555 1555 2.23 LINK O3' DT B 1 MN MN B 101 1555 1555 2.41 LINK OP1 DT B 1 MN MN B 102 1555 1555 2.36 LINK OP1 DC B 2 MN MN B 101 1555 1555 2.23 LINK MN MN B 102 O HOH B 205 1555 1555 2.16 LINK MN MN B 102 O HOH B 212 1555 1555 2.14 LINK MN MN B 102 O HOH B 213 1555 1555 2.22 SITE 1 AC1 7 DC B 2 MN B 101 ASP Z 152 ASP Z 171 SITE 2 AC1 7 HOH Z 524 HOH Z 563 HOH Z 583 SITE 1 AC2 1 CYS Z 80 SITE 1 AC3 5 DT A 4 HOH A 115 SER Z 222 SER Z 229 SITE 2 AC3 5 ILE Z 233 SITE 1 AC4 7 DT B 1 DC B 2 ASP Z 152 MN Z 401 SITE 2 AC4 7 HOH Z 505 HOH Z 534 HOH Z 539 SITE 1 AC5 6 DT B 1 HOH B 205 HOH B 212 HOH B 213 SITE 2 AC5 6 HOH Z 510 HOH Z 601 CRYST1 73.837 73.837 179.067 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005585 0.00000