HEADER LIGASE 28-FEB-17 5V0R TITLE CRYSTAL STRUCTURE OF UBIQUITIN-CONJUGATING ENZYME FROM NAEGLERIA TITLE 2 FOWLERI WITH MODIFIED CYS99 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAFOA.00601.C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA FOWLERI; SOURCE 3 ORGANISM_TAXID: 5763; SOURCE 4 STRAIN: ATCC 30863; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, NAEGLERIA FOWLERI, UBIQUITIN-CONJUGATING ENZYME, E2, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 29-MAR-17 5V0R 0 JRNL AUTH R.M.IRWIN,S.J.MAYCLIN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF UBIQUITIN-CONJUGATING ENZYME FROM JRNL TITL 2 NAEGLERIA FOWLERI WITH MODIFIED CYS99 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6361 - 3.8216 1.00 1508 150 0.1544 0.2077 REMARK 3 2 3.8216 - 3.0336 1.00 1420 129 0.1456 0.1742 REMARK 3 3 3.0336 - 2.6502 1.00 1408 137 0.1549 0.1722 REMARK 3 4 2.6502 - 2.4079 1.00 1379 131 0.1567 0.1850 REMARK 3 5 2.4079 - 2.2353 1.00 1376 137 0.1455 0.1858 REMARK 3 6 2.2353 - 2.1035 1.00 1366 154 0.1472 0.1790 REMARK 3 7 2.1035 - 1.9982 1.00 1349 149 0.1497 0.1833 REMARK 3 8 1.9982 - 1.9112 1.00 1369 140 0.1624 0.2029 REMARK 3 9 1.9112 - 1.8376 1.00 1362 127 0.1688 0.1794 REMARK 3 10 1.8376 - 1.7742 1.00 1331 158 0.1753 0.2350 REMARK 3 11 1.7742 - 1.7187 1.00 1352 146 0.1640 0.1948 REMARK 3 12 1.7187 - 1.6696 1.00 1329 153 0.1692 0.1863 REMARK 3 13 1.6696 - 1.6256 0.99 1338 147 0.1716 0.2020 REMARK 3 14 1.6256 - 1.5860 0.99 1346 117 0.1790 0.2309 REMARK 3 15 1.5860 - 1.5499 0.97 1295 131 0.1964 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1205 REMARK 3 ANGLE : 0.889 1655 REMARK 3 CHIRALITY : 0.052 186 REMARK 3 PLANARITY : 0.007 216 REMARK 3 DIHEDRAL : 14.311 742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0225 -2.2217 -16.3882 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.0862 REMARK 3 T33: 0.1115 T12: 0.0179 REMARK 3 T13: 0.0116 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 7.7442 L22: 2.9808 REMARK 3 L33: 3.6356 L12: -0.9559 REMARK 3 L13: 1.2741 L23: -0.9067 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.4518 S13: 0.2920 REMARK 3 S21: -0.3356 S22: -0.1521 S23: -0.1426 REMARK 3 S31: 0.0244 S32: 0.1837 S33: 0.1208 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1980 -6.5492 -9.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0628 REMARK 3 T33: 0.0969 T12: 0.0089 REMARK 3 T13: 0.0114 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.0014 L22: 3.2162 REMARK 3 L33: 1.0329 L12: 0.5808 REMARK 3 L13: -0.0556 L23: -0.3064 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: 0.0768 S13: 0.0068 REMARK 3 S21: -0.2681 S22: 0.0654 S23: 0.0436 REMARK 3 S31: -0.0748 S32: -0.0502 S33: 0.0761 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0621 -8.6497 -5.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0976 REMARK 3 T33: 0.1163 T12: 0.0016 REMARK 3 T13: 0.0125 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.4427 L22: 2.9146 REMARK 3 L33: 1.1531 L12: 0.3621 REMARK 3 L13: 0.2683 L23: 0.2988 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: -0.0531 S13: -0.1954 REMARK 3 S21: -0.0920 S22: -0.0523 S23: 0.1080 REMARK 3 S31: 0.0038 S32: -0.0747 S33: 0.1921 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2288 -15.8340 -3.2418 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.0992 REMARK 3 T33: 0.1020 T12: -0.0034 REMARK 3 T13: 0.0008 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.6354 L22: 1.7069 REMARK 3 L33: 0.4169 L12: 1.0920 REMARK 3 L13: -0.3710 L23: 0.3405 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.1622 S13: 0.0788 REMARK 3 S21: 0.2024 S22: -0.0572 S23: 0.0950 REMARK 3 S31: 0.1089 S32: 0.0420 S33: 0.0326 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9710 -21.4148 -7.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.1348 REMARK 3 T33: 0.1396 T12: -0.0109 REMARK 3 T13: 0.0015 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.2679 L22: 3.1293 REMARK 3 L33: 6.0387 L12: 2.5747 REMARK 3 L13: -4.8656 L23: -2.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0815 S13: -0.0807 REMARK 3 S21: -0.0623 S22: 0.0862 S23: -0.0175 REMARK 3 S31: 0.3480 S32: -0.2225 S33: -0.0487 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0933 -13.2433 -13.2355 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.1227 REMARK 3 T33: 0.1039 T12: 0.0326 REMARK 3 T13: 0.0223 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.2926 L22: 2.9137 REMARK 3 L33: 2.0047 L12: 0.6801 REMARK 3 L13: 1.5477 L23: -0.1602 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: -0.0689 S13: -0.0006 REMARK 3 S21: 0.1050 S22: 0.1123 S23: 0.0116 REMARK 3 S31: -0.1126 S32: -0.0799 S33: 0.0438 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8268 -22.7060 -13.4517 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1756 REMARK 3 T33: 0.1925 T12: 0.0325 REMARK 3 T13: 0.0217 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.0262 L22: 7.7352 REMARK 3 L33: 6.4044 L12: 3.9460 REMARK 3 L13: -0.0501 L23: -2.9363 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.3029 S13: -0.0964 REMARK 3 S21: -0.6778 S22: 0.0493 S23: -0.1050 REMARK 3 S31: 0.4228 S32: 0.3762 S33: -0.0760 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2789 -24.9977 -9.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1227 REMARK 3 T33: 0.1091 T12: -0.0293 REMARK 3 T13: 0.0173 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 8.3303 L22: 2.1222 REMARK 3 L33: 5.2026 L12: -0.3058 REMARK 3 L13: 1.1410 L23: 2.4359 REMARK 3 S TENSOR REMARK 3 S11: 0.2075 S12: -0.0524 S13: 0.1372 REMARK 3 S21: -0.0394 S22: -0.1075 S23: 0.0470 REMARK 3 S31: 0.0517 S32: -0.3726 S33: -0.0997 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6477 -15.6256 -4.2937 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.3183 REMARK 3 T33: 0.3378 T12: -0.0195 REMARK 3 T13: 0.0925 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 3.7869 L22: 4.7499 REMARK 3 L33: 2.6084 L12: 4.1663 REMARK 3 L13: 2.7455 L23: 3.3411 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: -1.1753 S13: 1.0493 REMARK 3 S21: 0.0278 S22: -0.2302 S23: 0.0494 REMARK 3 S31: -0.3553 S32: -0.2712 S33: -0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.82 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.04 REMARK 200 R MERGE FOR SHELL (I) : 0.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TOP96 C9 (100 MM TRIS-HCL PH 8.5, 200 REMARK 280 MM MGCL2, 25 % PEG 3350), CRYO 15% ETHYLENE GLYCOL, APO, TRAY REMARK 280 286982 PUCK VXX6-11, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.18000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 446 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 156 REMARK 465 GLU A 157 REMARK 465 SER A 158 REMARK 465 LEU A 159 REMARK 465 MET A 160 REMARK 465 GLU A 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 SER A 13 OG REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 125 O HOH A 301 2.05 REMARK 500 O HOH A 439 O HOH A 481 2.12 REMARK 500 O HOH A 529 O HOH A 533 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 361 O HOH A 464 4544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 104 -114.74 -128.62 REMARK 500 ASP A 144 79.34 -154.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 539 O REMARK 620 2 HOH A 310 O 173.8 REMARK 620 3 HOH A 360 O 91.0 88.0 REMARK 620 4 HOH A 365 O 88.4 85.4 91.8 REMARK 620 5 HOH A 490 O 89.1 97.1 90.2 176.8 REMARK 620 6 HOH A 482 O 91.9 89.4 175.3 91.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NAFOA.00601.C RELATED DB: TARGETTRACK DBREF 5V0R A -7 161 PDB 5V0R 5V0R -7 161 SEQRES 1 A 169 MET ALA HIS HIS HIS HIS HIS HIS MET LEU ASN ASN ASN SEQRES 2 A 169 GLN ASN ASN LYS LYS MET SER SER SER SER LYS LEU ARG SEQRES 3 A 169 LEU LEU SER ASP LEU GLN GLN LEU GLN LYS ASP PRO PRO SEQRES 4 A 169 GLU GLY ILE THR ALA SER PRO GLU SER GLU ASN ASP LEU SEQRES 5 A 169 TYR VAL TRP ASN ALA THR ILE THR GLY PRO MET ASP SER SEQRES 6 A 169 ILE TRP GLU GLY GLY ILE PHE PHE LEU ARG LEU THR PHE SEQRES 7 A 169 PRO GLU ASP TYR PRO THR LYS PRO PRO LYS VAL LYS PHE SEQRES 8 A 169 THR SER LYS ILE PHE HIS PRO ASN VAL TYR LYS ASP GLY SEQRES 9 A 169 SER ILE CSA LEU ASP ILE VAL GLN ASP LYS TRP SER PRO SEQRES 10 A 169 ILE TYR THR VAL ASP SER ILE LEU THR SER ILE LEU SER SEQRES 11 A 169 LEU LEU GLU ASP PRO ASN PRO ASP SER PRO ALA ASN PRO SEQRES 12 A 169 GLU ALA ALA LYS LEU PHE VAL ASN ASP PRO LYS GLU TYR SEQRES 13 A 169 LYS LYS ARG VAL ARG LYS CYS VAL GLU SER LEU MET GLU HET CSA A 99 10 HET MG A 201 1 HET CL A 202 1 HETNAM CSA S-ACETONYLCYSTEINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 1 CSA C6 H11 N O3 S FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 HOH *239(H2 O) HELIX 1 AA1 LYS A 10 ASP A 29 1 20 HELIX 2 AA2 LEU A 100 GLN A 104 5 5 HELIX 3 AA3 THR A 112 LEU A 124 1 13 HELIX 4 AA4 ASN A 134 ASP A 144 1 11 HELIX 5 AA5 ASP A 144 LYS A 154 1 11 SHEET 1 AA1 4 ILE A 34 PRO A 38 0 SHEET 2 AA1 4 VAL A 46 THR A 52 -1 O ASN A 48 N SER A 37 SHEET 3 AA1 4 ILE A 63 THR A 69 -1 O LEU A 66 N ALA A 49 SHEET 4 AA1 4 LYS A 80 PHE A 83 -1 O LYS A 82 N ARG A 67 LINK C ILE A 98 N CSA A 99 1555 1555 1.33 LINK C CSA A 99 N LEU A 100 1555 1555 1.34 LINK MG MG A 201 O HOH A 539 1555 1555 2.14 LINK MG MG A 201 O HOH A 310 1555 1555 2.04 LINK MG MG A 201 O HOH A 360 1555 1555 2.04 LINK MG MG A 201 O HOH A 365 1555 1555 2.11 LINK MG MG A 201 O HOH A 490 1555 4544 2.13 LINK MG MG A 201 O HOH A 482 1555 4544 2.06 CISPEP 1 TYR A 74 PRO A 75 0 7.74 SITE 1 AC1 6 HOH A 310 HOH A 360 HOH A 365 HOH A 482 SITE 2 AC1 6 HOH A 490 HOH A 539 SITE 1 AC2 6 PRO A 71 GLU A 72 PRO A 135 GLU A 136 SITE 2 AC2 6 LYS A 139 HOH A 509 CRYST1 52.360 85.240 33.850 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029542 0.00000