HEADER OXIDOREDUCTASE 28-FEB-17 5V0S TITLE CRYSTAL STRUCTURE OF THE ACT DOMAIN OF PREPHENATE DEHYDROGENASE TYRA TITLE 2 FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPHENATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 307-375; COMPND 5 EC: 1.3.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: TYRA, GBAA_2954, BASH2_02940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PREPHENATE DEHYDROGENASE, TYRA, BACILLUS ANTHRACIS, CSGID, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,J.HOU,M.T.CYMBOROWSKI,Z.OTWINOWSKI,K.KWON,D.CHRISTENDAT, AUTHOR 2 A.GRITSUNOV,W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 23-OCT-24 5V0S 1 REMARK REVDAT 4 23-MAR-22 5V0S 1 REMARK REVDAT 3 07-APR-21 5V0S 1 JRNL LINK REVDAT 2 20-SEP-17 5V0S 1 REMARK REVDAT 1 08-MAR-17 5V0S 0 JRNL AUTH I.G.SHABALIN,A.GRITSUNOV,J.HOU,J.SLAWEK,C.D.MIKS,D.R.COOPER, JRNL AUTH 2 W.MINOR,D.CHRISTENDAT JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF BACILLUS ANTHRACIS JRNL TITL 2 PREPHENATE DEHYDROGENASE REVEALS AN UNUSUAL MODE OF JRNL TITL 3 INHIBITION BY TYROSINE VIA THE ACT DOMAIN. JRNL REF FEBS J. V. 287 2235 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31750992 JRNL DOI 10.1111/FEBS.15150 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 10640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -3.24000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1081 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1070 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1448 ; 1.501 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2430 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 5.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;34.549 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;15.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.110 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1173 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 202 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 307 375 B 307 375 3876 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1150 13.7640 -4.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1565 REMARK 3 T33: 0.2672 T12: 0.0448 REMARK 3 T13: -0.1320 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 12.3397 L22: 18.6227 REMARK 3 L33: 22.3098 L12: 7.5603 REMARK 3 L13: -9.4495 L23: -14.0150 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: 0.0593 S13: 0.4197 REMARK 3 S21: -0.7823 S22: 0.0250 S23: 0.7611 REMARK 3 S31: 0.8496 S32: 0.2895 S33: 0.1463 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1630 5.3910 -1.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.0866 REMARK 3 T33: 0.1647 T12: 0.0090 REMARK 3 T13: -0.0388 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 10.6691 L22: 5.7734 REMARK 3 L33: 19.7496 L12: -2.0701 REMARK 3 L13: -8.1271 L23: 5.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.2218 S12: 0.0633 S13: -0.2375 REMARK 3 S21: -0.2775 S22: -0.2723 S23: 0.2056 REMARK 3 S31: -0.3452 S32: -0.3225 S33: 0.0506 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8150 15.4530 -1.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1348 REMARK 3 T33: 0.1642 T12: -0.0098 REMARK 3 T13: -0.0535 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 6.5712 L22: 5.6203 REMARK 3 L33: 4.1466 L12: -2.8724 REMARK 3 L13: -1.5240 L23: 0.1897 REMARK 3 S TENSOR REMARK 3 S11: -0.4056 S12: 0.0432 S13: 0.0532 REMARK 3 S21: 0.1717 S22: 0.2463 S23: -0.0281 REMARK 3 S31: 0.0960 S32: 0.0147 S33: 0.1592 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 344 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1890 12.9240 -7.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.1746 REMARK 3 T33: 0.1812 T12: -0.0006 REMARK 3 T13: -0.1045 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 4.3005 L22: 7.6647 REMARK 3 L33: 5.2798 L12: -0.6166 REMARK 3 L13: -0.6410 L23: 2.4013 REMARK 3 S TENSOR REMARK 3 S11: -0.2269 S12: 0.2402 S13: 0.1856 REMARK 3 S21: -0.4035 S22: 0.0812 S23: 0.3306 REMARK 3 S31: -0.1486 S32: 0.1695 S33: 0.1457 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3080 5.2510 -7.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.2876 REMARK 3 T33: 0.2832 T12: -0.0615 REMARK 3 T13: -0.0663 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 7.8678 L22: 29.6916 REMARK 3 L33: 9.2654 L12: 3.7082 REMARK 3 L13: 2.6239 L23: 1.5449 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: 0.4972 S13: -0.4491 REMARK 3 S21: -0.5552 S22: 0.2990 S23: 0.9825 REMARK 3 S31: 0.3865 S32: -0.3124 S33: -0.2066 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 307 B 330 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1140 10.1910 5.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.1718 REMARK 3 T33: 0.1884 T12: -0.0056 REMARK 3 T13: -0.0411 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 5.7347 L22: 6.3380 REMARK 3 L33: 2.2249 L12: 2.4501 REMARK 3 L13: 0.2374 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: 0.0456 S13: -0.0557 REMARK 3 S21: 0.0868 S22: -0.1254 S23: -0.3981 REMARK 3 S31: 0.0375 S32: 0.3536 S33: 0.2252 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 331 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5380 16.0340 3.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1069 REMARK 3 T33: 0.1738 T12: -0.0276 REMARK 3 T13: -0.0347 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 7.3850 L22: 4.1914 REMARK 3 L33: 4.6838 L12: 1.7846 REMARK 3 L13: -1.2829 L23: -0.9468 REMARK 3 S TENSOR REMARK 3 S11: -0.3127 S12: 0.2445 S13: -0.0244 REMARK 3 S21: -0.1839 S22: 0.0411 S23: 0.0229 REMARK 3 S31: 0.1458 S32: -0.1758 S33: 0.2716 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 343 B 356 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7620 16.8300 1.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2147 REMARK 3 T33: 0.2082 T12: -0.0917 REMARK 3 T13: -0.0739 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 14.3465 L22: 7.2583 REMARK 3 L33: 16.0475 L12: -0.2931 REMARK 3 L13: -9.9648 L23: -0.1348 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: 0.5074 S13: 0.0072 REMARK 3 S21: -0.5341 S22: -0.1164 S23: -0.4625 REMARK 3 S31: -0.3561 S32: 0.2996 S33: 0.2428 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 357 B 368 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5640 13.6590 16.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.2691 REMARK 3 T33: 0.1588 T12: -0.0605 REMARK 3 T13: -0.0830 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 12.6075 L22: 17.2846 REMARK 3 L33: 13.4577 L12: -7.1427 REMARK 3 L13: -1.7808 L23: 0.4479 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: -1.0849 S13: 0.0875 REMARK 3 S21: 0.7459 S22: 0.0026 S23: -0.1161 REMARK 3 S31: -0.4532 S32: -0.0918 S33: 0.0955 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 369 B 375 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7800 10.0400 10.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.3754 REMARK 3 T33: 0.3410 T12: -0.0207 REMARK 3 T13: -0.0886 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 10.1964 L22: 20.4262 REMARK 3 L33: 3.1690 L12: 1.8169 REMARK 3 L13: -2.1468 L23: 3.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.8134 S13: -0.6137 REMARK 3 S21: 0.0442 S22: -0.1303 S23: -0.8862 REMARK 3 S31: 0.0769 S32: 0.3413 S33: 0.1416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5V0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11294 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : 0.61900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, MLPHARE, DM, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 15 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 500 MM NACL, 5% GLYCEROL, AND 10 MM BME WERE MIXED REMARK 280 WITH 0.2 UL OF THE MCSG SUITE I CONDITION #31 (0.1 M TRIS PH=8.5, REMARK 280 0.2 M CALCIUM CHLORIDE, 25% W/V PEG 4000) AND EQUILIBRATED REMARK 280 AGAINST 1.5 M NACL SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION REMARK 280 PLATE (SWISSCI). BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED REMARK 280 WITH 1/50 V/V OF 2 MG/ML CHYMOTRYPSIN SOLUTION AT 289 K FOR 3 REMARK 280 HOURS., PH 8.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.59667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.79833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.69750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.89917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 194.49583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 155.59667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.79833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.89917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.69750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 194.49583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 SO4 A 401 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 343 CD NE CZ NH1 NH2 REMARK 470 ARG A 356 NE CZ NH1 NH2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 GLU A 358 CD OE1 OE2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 GLN A 373 CD OE1 NE2 REMARK 470 TYR A 375 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 344 CG CD OE1 OE2 REMARK 470 ARG B 356 NE CZ NH1 NH2 REMARK 470 GLU B 358 CD OE1 OE2 REMARK 470 GLU B 369 CG CD OE1 OE2 REMARK 470 GLN B 373 CD OE1 NE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 330 OE2 REMARK 620 2 HOH A 513 O 38.6 REMARK 620 3 HOH A 520 O 42.9 5.0 REMARK 620 4 HOH A 526 O 36.4 7.7 8.4 REMARK 620 5 ARG B 329 O 32.8 6.2 10.1 6.0 REMARK 620 6 HOH B 503 O 37.1 1.5 6.1 7.0 4.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 331 OE1 REMARK 620 2 GLU A 331 OE2 48.7 REMARK 620 3 HOH A 506 O 61.3 84.8 REMARK 620 4 GLU B 370 OE2 95.3 52.2 132.0 REMARK 620 5 HOH B 523 O 129.2 156.1 76.8 135.1 REMARK 620 6 HOH B 530 O 147.4 111.9 150.8 59.7 79.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5USC RELATED DB: PDB REMARK 900 COMPLEX OF THE FULL-LENGTH PROTEIN WITH NAD AND L-TYROSINE REMARK 900 RELATED ID: 5UYY RELATED DB: PDB REMARK 900 COMPLEX OF THE FULL-LENGTH WITH L-TYROSINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FULL-LENGTH PROTEIN WAS SUBJECTED TO LIMITED PROTEOLYSIS BY REMARK 999 CHYMOTRYPSIN RIGHT BEFORE CRYSTALLIZATION. ONLY ACT DOMAIN IS REMARK 999 PRESENT IN THE STRUCTURE DBREF 5V0S A 307 375 UNP Q81P63 Q81P63_BACAN 307 375 DBREF 5V0S B 307 375 UNP Q81P63 Q81P63_BACAN 307 375 SEQRES 1 A 69 HIS ASP LEU TYR VAL ASP VAL LEU ASP LYS VAL GLY ALA SEQRES 2 A 69 LEU ALA HIS VAL THR SER ILE LEU ALA ARG GLU GLU ILE SEQRES 3 A 69 SER ILE THR ASN LEU GLN ILE LEU GLU ALA ARG GLU GLY SEQRES 4 A 69 LEU LEU GLY VAL LEU ARG ILE SER PHE GLN ARG GLU GLU SEQRES 5 A 69 ASP ARG MSE LYS ALA LYS LEU ALA LEU GLY GLU GLU LYS SEQRES 6 A 69 TYR GLN THR TYR SEQRES 1 B 69 HIS ASP LEU TYR VAL ASP VAL LEU ASP LYS VAL GLY ALA SEQRES 2 B 69 LEU ALA HIS VAL THR SER ILE LEU ALA ARG GLU GLU ILE SEQRES 3 B 69 SER ILE THR ASN LEU GLN ILE LEU GLU ALA ARG GLU GLY SEQRES 4 B 69 LEU LEU GLY VAL LEU ARG ILE SER PHE GLN ARG GLU GLU SEQRES 5 B 69 ASP ARG MSE LYS ALA LYS LEU ALA LEU GLY GLU GLU LYS SEQRES 6 B 69 TYR GLN THR TYR MODRES 5V0S MSE A 361 MET MODIFIED RESIDUE MODRES 5V0S MSE B 361 MET MODIFIED RESIDUE HET MSE A 361 8 HET MSE B 361 8 HET SO4 A 401 5 HET CA A 402 1 HET CA B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *73(H2 O) HELIX 1 AA1 ASP A 315 GLU A 330 1 16 HELIX 2 AA2 ARG A 356 GLU A 370 1 15 HELIX 3 AA3 ASP B 315 GLU B 330 1 16 HELIX 4 AA4 ARG B 356 GLU B 370 1 15 SHEET 1 AA1 8 THR A 374 TYR A 375 0 SHEET 2 AA1 8 ASP A 308 VAL A 313 -1 N TYR A 310 O TYR A 375 SHEET 3 AA1 8 GLY A 348 SER A 353 -1 O LEU A 350 N VAL A 311 SHEET 4 AA1 8 ASN A 336 LEU A 340 -1 N LEU A 340 O VAL A 349 SHEET 5 AA1 8 ASN B 336 LEU B 340 -1 O LEU B 337 N LEU A 337 SHEET 6 AA1 8 GLY B 348 SER B 353 -1 O VAL B 349 N LEU B 340 SHEET 7 AA1 8 ASP B 308 VAL B 313 -1 N VAL B 311 O LEU B 350 SHEET 8 AA1 8 THR B 374 TYR B 375 -1 O TYR B 375 N TYR B 310 LINK C ARG A 360 N MSE A 361 1555 1555 1.32 LINK C MSE A 361 N LYS A 362 1555 1555 1.33 LINK C ARG B 360 N MSE B 361 1555 1555 1.33 LINK C MSE B 361 N LYS B 362 1555 1555 1.33 LINK OE2 GLU A 330 CA CA B 401 1555 8555 2.70 LINK OE1 GLU A 331 CA CA A 402 1555 1555 2.84 LINK OE2 GLU A 331 CA CA A 402 1555 1555 2.41 LINK CA CA A 402 O HOH A 506 1555 1555 2.40 LINK CA CA A 402 OE2 GLU B 370 8555 1555 2.70 LINK CA CA A 402 O HOH B 523 1555 8555 2.40 LINK CA CA A 402 O HOH B 530 1555 8555 2.40 LINK O HOH A 513 CA CA B 401 8555 1555 2.40 LINK O HOH A 520 CA CA B 401 8555 1555 2.40 LINK O HOH A 526 CA CA B 401 8555 1555 2.40 LINK O ARG B 329 CA CA B 401 1555 1555 2.87 LINK CA CA B 401 O HOH B 503 1555 1555 2.39 SITE 1 AC1 1 HOH A 529 SITE 1 AC2 5 GLU A 331 HOH A 506 GLU B 370 HOH B 523 SITE 2 AC2 5 HOH B 530 SITE 1 AC3 6 GLU A 330 HOH A 513 HOH A 520 HOH A 526 SITE 2 AC3 6 ARG B 329 HOH B 503 CRYST1 48.070 48.070 233.395 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020803 0.012011 0.000000 0.00000 SCALE2 0.000000 0.024021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004285 0.00000