data_5V1K # _entry.id 5V1K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V1K pdb_00005v1k 10.2210/pdb5v1k/pdb WWPDB D_1000226719 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V1K _pdbx_database_status.recvd_initial_deposition_date 2017-03-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pallan, P.S.' 1 ? 'Egli, M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.7b02694 _citation.pdbx_database_id_PubMed 28570818 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schlegel, M.K.' 1 ? primary 'Foster, D.J.' 2 ? primary ;Kel'in, A.V. ; 3 ? primary 'Zlatev, I.' 4 ? primary 'Bisbe, A.' 5 ? primary 'Jayaraman, M.' 6 ? primary 'Lackey, J.G.' 7 ? primary 'Rajeev, K.G.' 8 ? primary 'Charisse, K.' 9 ? primary 'Harp, J.' 10 ? primary 'Pallan, P.S.' 11 ? primary 'Maier, M.A.' 12 ? primary 'Egli, M.' 13 ? primary 'Manoharan, M.' 14 ? # _cell.angle_alpha 73.00 _cell.angle_alpha_esd ? _cell.angle_beta 87.17 _cell.angle_beta_esd ? _cell.angle_gamma 66.58 _cell.angle_gamma_esd ? _cell.entry_id 5V1K _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.681 _cell.length_a_esd ? _cell.length_b 27.680 _cell.length_b_esd ? _cell.length_c 29.050 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*CP*GP*AP*AP*(5BU)P*(8RJ)P*AP*GP*CP*G)-3') ; 3886.247 2 ? ? ? ? 2 water nat water 18.015 170 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGCGAA(5BU)(8RJ)AGCG' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUXAGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 A n 1 7 5BU n 1 8 8RJ n 1 9 A n 1 10 G n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5V1K _struct_ref.pdbx_db_accession 5V1K _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5V1K A 1 ? 12 ? 5V1K 101 ? 112 ? 101 112 2 1 5V1K B 1 ? 12 ? 5V1K 201 ? 212 ? 201 212 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 8RJ 'RNA linking' . "(R)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE" ? 'C8 H13 N2 O7 P' 280.172 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V1K _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Oligonucleotide (0.6 mM), sodium cacodylate (20 mM, pH 6.0), potassium chloride (40 mM), spermine tetrahydrochloride (6 mM), and 2-methyl-2,4-pentanediol (MPD; 5% (v/v) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type MARRESEARCH _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-02-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.916978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.916978 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5V1K _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.18 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20171 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.3 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 37.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.22 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1914 _reflns_shell.percent_possible_all 90.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.449 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5V1K _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.18 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18748 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.8 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 506 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 676 _refine_hist.d_res_high 1.18 _refine_hist.d_res_low 50 # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 5V1K _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.224 _pdbx_refine.free_R_factor_no_cutoff 0.168 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 5V1K _struct.title 'Structure of R-GNA dodecamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V1K _struct_keywords.text 'Glycol Nucleic Acid, GNA, RGNA, RNA, RNA X-ray structure, Nuclease Stability, modified RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 6 "O3'" ? ? ? 1_555 A 5BU 7 P A ? A A 106 A 5BU 107 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A A 6 "O3'" ? ? ? 1_555 A 5BU 7 P B ? A A 106 A 5BU 107 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale3 covale both ? A 5BU 7 "O3'" A ? ? 1_555 A 8RJ 8 P A ? A 5BU 107 A 8RJ 108 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? A 5BU 7 "O3'" B ? ? 1_555 A 8RJ 8 P B ? A 5BU 107 A 8RJ 108 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale5 covale one ? A 8RJ 8 O2G ? ? ? 1_555 A A 9 P ? ? A 8RJ 108 A A 109 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? B A 6 "O3'" ? ? ? 1_555 B 5BU 7 P ? ? B A 206 B 5BU 207 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale7 covale both ? B 5BU 7 "O3'" ? ? ? 1_555 B 8RJ 8 P ? ? B 5BU 207 B 8RJ 208 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale8 covale one ? B 8RJ 8 O2G ? ? ? 1_555 B A 9 P ? ? B 8RJ 208 B A 209 1_555 ? ? ? ? ? ? ? 1.526 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 101 B G 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 101 B G 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 101 B G 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 102 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 102 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 102 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 103 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 103 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 103 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B A 9 N7 ? ? A G 104 B A 209 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 N3 ? ? ? 1_555 B A 9 N6 ? ? A G 104 B A 209 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B 5BU 7 O2 ? ? A A 105 B 5BU 207 1_555 ? ? ? ? ? ? 'A-5BU MISPAIR' ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 B 8RJ 8 N3 ? ? A A 105 B 8RJ 208 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 B 8RJ 8 O2 ? ? A A 105 B 8RJ 208 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog15 hydrog ? ? A 5BU 7 N3 A ? ? 1_555 B A 6 N1 ? ? A 5BU 107 B A 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 5BU 7 N3 B ? ? 1_555 B A 6 N1 ? ? A 5BU 107 B A 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A 5BU 7 O4 A ? ? 1_555 B A 6 N6 ? ? A 5BU 107 B A 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A 5BU 7 O4 B ? ? 1_555 B A 6 N6 ? ? A 5BU 107 B A 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A 8RJ 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A 8RJ 108 B A 205 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog20 hydrog ? ? A 8RJ 8 O2 ? ? ? 1_555 B A 5 N6 ? ? A 8RJ 108 B A 205 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B G 4 N3 ? ? A A 109 B G 204 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 B G 4 N2 ? ? A A 109 B G 204 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 110 B C 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 110 B C 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 110 B C 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 111 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 111 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 111 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 112 B C 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 112 B C 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 112 B C 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5V1K _atom_sites.fract_transf_matrix[1][1] 0.042228 _atom_sites.fract_transf_matrix[1][2] -0.018291 _atom_sites.fract_transf_matrix[1][3] 0.003515 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039371 _atom_sites.fract_transf_matrix[2][3] -0.012273 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036101 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol B BR C N O P # loop_ _database_PDB_caveat.text 'THE RFREE FLAGS IN THE DEPOSITED SF FILE DO NOT CORRESPOND TO THOSE USED FOR REFINEMENT' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 101 101 C C A . n A 1 2 G 2 102 102 G G A . n A 1 3 C 3 103 103 C C A . n A 1 4 G 4 104 104 G G A . n A 1 5 A 5 105 105 A A A . n A 1 6 A 6 106 106 A A A . n A 1 7 5BU 7 107 107 5BU 5BU A . n A 1 8 8RJ 8 108 108 8RJ YTH A . n A 1 9 A 9 109 109 A A A . n A 1 10 G 10 110 110 G G A . n A 1 11 C 11 111 111 C C A . n A 1 12 G 12 112 112 G G A . n B 1 1 C 1 201 201 C C B . n B 1 2 G 2 202 202 G G B . n B 1 3 C 3 203 203 C C B . n B 1 4 G 4 204 204 G G B . n B 1 5 A 5 205 205 A A B . n B 1 6 A 6 206 206 A A B . n B 1 7 5BU 7 207 207 5BU 5BU B . n B 1 8 8RJ 8 208 208 8RJ YTH B . n B 1 9 A 9 209 209 A A B . n B 1 10 G 10 210 210 G G B . n B 1 11 C 11 211 211 C C B . n B 1 12 G 12 212 212 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 470 HOH HOH A . C 2 HOH 2 202 428 HOH HOH A . C 2 HOH 3 203 386 HOH HOH A . C 2 HOH 4 204 454 HOH HOH A . C 2 HOH 5 205 383 HOH HOH A . C 2 HOH 6 206 469 HOH HOH A . C 2 HOH 7 207 429 HOH HOH A . C 2 HOH 8 208 441 HOH HOH A . C 2 HOH 9 209 431 HOH HOH A . C 2 HOH 10 210 405 HOH HOH A . C 2 HOH 11 211 304 HOH HOH A . C 2 HOH 12 212 355 HOH HOH A . C 2 HOH 13 213 350 HOH HOH A . C 2 HOH 14 214 352 HOH HOH A . C 2 HOH 15 215 455 HOH HOH A . C 2 HOH 16 216 372 HOH HOH A . C 2 HOH 17 217 369 HOH HOH A . C 2 HOH 18 218 305 HOH HOH A . C 2 HOH 19 219 356 HOH HOH A . C 2 HOH 20 220 464 HOH HOH A . C 2 HOH 21 221 329 HOH HOH A . C 2 HOH 22 222 323 HOH HOH A . C 2 HOH 23 223 360 HOH HOH A . C 2 HOH 24 224 325 HOH HOH A . C 2 HOH 25 225 341 HOH HOH A . C 2 HOH 26 226 316 HOH HOH A . C 2 HOH 27 227 308 HOH HOH A . C 2 HOH 28 228 334 HOH HOH A . C 2 HOH 29 229 346 HOH HOH A . C 2 HOH 30 230 363 HOH HOH A . C 2 HOH 31 231 373 HOH HOH A . C 2 HOH 32 232 366 HOH HOH A . C 2 HOH 33 233 307 HOH HOH A . C 2 HOH 34 234 443 HOH HOH A . C 2 HOH 35 235 306 HOH HOH A . C 2 HOH 36 236 348 HOH HOH A . C 2 HOH 37 237 321 HOH HOH A . C 2 HOH 38 238 401 HOH HOH A . C 2 HOH 39 239 344 HOH HOH A . C 2 HOH 40 240 339 HOH HOH A . C 2 HOH 41 241 375 HOH HOH A . C 2 HOH 42 242 364 HOH HOH A . C 2 HOH 43 243 322 HOH HOH A . C 2 HOH 44 244 337 HOH HOH A . C 2 HOH 45 245 336 HOH HOH A . C 2 HOH 46 246 303 HOH HOH A . C 2 HOH 47 247 335 HOH HOH A . C 2 HOH 48 248 448 HOH HOH A . C 2 HOH 49 249 434 HOH HOH A . C 2 HOH 50 250 418 HOH HOH A . C 2 HOH 51 251 381 HOH HOH A . C 2 HOH 52 252 403 HOH HOH A . C 2 HOH 53 253 440 HOH HOH A . C 2 HOH 54 254 388 HOH HOH A . C 2 HOH 55 255 409 HOH HOH A . C 2 HOH 56 256 319 HOH HOH A . C 2 HOH 57 257 351 HOH HOH A . C 2 HOH 58 258 460 HOH HOH A . C 2 HOH 59 259 400 HOH HOH A . C 2 HOH 60 260 345 HOH HOH A . C 2 HOH 61 261 397 HOH HOH A . C 2 HOH 62 262 338 HOH HOH A . C 2 HOH 63 263 462 HOH HOH A . C 2 HOH 64 264 456 HOH HOH A . C 2 HOH 65 265 324 HOH HOH A . C 2 HOH 66 266 461 HOH HOH A . C 2 HOH 67 267 377 HOH HOH A . C 2 HOH 68 268 463 HOH HOH A . C 2 HOH 69 269 468 HOH HOH A . C 2 HOH 70 270 466 HOH HOH A . D 2 HOH 1 301 427 HOH HOH B . D 2 HOH 2 302 332 HOH HOH B . D 2 HOH 3 303 374 HOH HOH B . D 2 HOH 4 304 365 HOH HOH B . D 2 HOH 5 305 326 HOH HOH B . D 2 HOH 6 306 399 HOH HOH B . D 2 HOH 7 307 340 HOH HOH B . D 2 HOH 8 308 419 HOH HOH B . D 2 HOH 9 309 361 HOH HOH B . D 2 HOH 10 310 343 HOH HOH B . D 2 HOH 11 311 309 HOH HOH B . D 2 HOH 12 312 320 HOH HOH B . D 2 HOH 13 313 302 HOH HOH B . D 2 HOH 14 314 314 HOH HOH B . D 2 HOH 15 315 315 HOH HOH B . D 2 HOH 16 316 330 HOH HOH B . D 2 HOH 17 317 357 HOH HOH B . D 2 HOH 18 318 447 HOH HOH B . D 2 HOH 19 319 382 HOH HOH B . D 2 HOH 20 320 312 HOH HOH B . D 2 HOH 21 321 310 HOH HOH B . D 2 HOH 22 322 327 HOH HOH B . D 2 HOH 23 323 415 HOH HOH B . D 2 HOH 24 324 331 HOH HOH B . D 2 HOH 25 325 426 HOH HOH B . D 2 HOH 26 326 318 HOH HOH B . D 2 HOH 27 327 392 HOH HOH B . D 2 HOH 28 328 376 HOH HOH B . D 2 HOH 29 329 328 HOH HOH B . D 2 HOH 30 330 354 HOH HOH B . D 2 HOH 31 331 421 HOH HOH B . D 2 HOH 32 332 444 HOH HOH B . D 2 HOH 33 333 402 HOH HOH B . D 2 HOH 34 334 446 HOH HOH B . D 2 HOH 35 335 311 HOH HOH B . D 2 HOH 36 336 367 HOH HOH B . D 2 HOH 37 337 317 HOH HOH B . D 2 HOH 38 338 410 HOH HOH B . D 2 HOH 39 339 342 HOH HOH B . D 2 HOH 40 340 425 HOH HOH B . D 2 HOH 41 341 353 HOH HOH B . D 2 HOH 42 342 313 HOH HOH B . D 2 HOH 43 343 422 HOH HOH B . D 2 HOH 44 344 384 HOH HOH B . D 2 HOH 45 345 301 HOH HOH B . D 2 HOH 46 346 439 HOH HOH B . D 2 HOH 47 347 368 HOH HOH B . D 2 HOH 48 348 424 HOH HOH B . D 2 HOH 49 349 411 HOH HOH B . D 2 HOH 50 350 359 HOH HOH B . D 2 HOH 51 351 362 HOH HOH B . D 2 HOH 52 352 432 HOH HOH B . D 2 HOH 53 353 420 HOH HOH B . D 2 HOH 54 354 452 HOH HOH B . D 2 HOH 55 355 391 HOH HOH B . D 2 HOH 56 356 333 HOH HOH B . D 2 HOH 57 357 457 HOH HOH B . D 2 HOH 58 358 385 HOH HOH B . D 2 HOH 59 359 389 HOH HOH B . D 2 HOH 60 360 430 HOH HOH B . D 2 HOH 61 361 390 HOH HOH B . D 2 HOH 62 362 358 HOH HOH B . D 2 HOH 63 363 378 HOH HOH B . D 2 HOH 64 364 417 HOH HOH B . D 2 HOH 65 365 451 HOH HOH B . D 2 HOH 66 366 370 HOH HOH B . D 2 HOH 67 367 408 HOH HOH B . D 2 HOH 68 368 433 HOH HOH B . D 2 HOH 69 369 412 HOH HOH B . D 2 HOH 70 370 442 HOH HOH B . D 2 HOH 71 371 414 HOH HOH B . D 2 HOH 72 372 393 HOH HOH B . D 2 HOH 73 373 347 HOH HOH B . D 2 HOH 74 374 394 HOH HOH B . D 2 HOH 75 375 380 HOH HOH B . D 2 HOH 76 376 387 HOH HOH B . D 2 HOH 77 377 458 HOH HOH B . D 2 HOH 78 378 349 HOH HOH B . D 2 HOH 79 379 379 HOH HOH B . D 2 HOH 80 380 459 HOH HOH B . D 2 HOH 81 381 396 HOH HOH B . D 2 HOH 82 382 416 HOH HOH B . D 2 HOH 83 383 398 HOH HOH B . D 2 HOH 84 384 436 HOH HOH B . D 2 HOH 85 385 406 HOH HOH B . D 2 HOH 86 386 395 HOH HOH B . D 2 HOH 87 387 413 HOH HOH B . D 2 HOH 88 388 371 HOH HOH B . D 2 HOH 89 389 449 HOH HOH B . D 2 HOH 90 390 450 HOH HOH B . D 2 HOH 91 391 438 HOH HOH B . D 2 HOH 92 392 453 HOH HOH B . D 2 HOH 93 393 435 HOH HOH B . D 2 HOH 94 394 465 HOH HOH B . D 2 HOH 95 395 404 HOH HOH B . D 2 HOH 96 396 437 HOH HOH B . D 2 HOH 97 397 407 HOH HOH B . D 2 HOH 98 398 423 HOH HOH B . D 2 HOH 99 399 445 HOH HOH B . D 2 HOH 100 400 467 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2430 ? 1 MORE 9 ? 1 'SSA (A^2)' 4260 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-21 2 'Structure model' 1 1 2017-08-16 3 'Structure model' 1 2 2022-06-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_refine 2 2 'Structure model' refine 3 3 'Structure model' chem_comp 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_refine.ls_R_factor_R_free' 2 2 'Structure model' '_refine.ls_R_factor_R_work' 3 3 'Structure model' '_chem_comp.mon_nstd_flag' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MAR345dtb ? ? ? 'MD-2 diffractometer software from EMBL (with LS-CAT developed extensions)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELXL ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A A 105 ? ? "O2'" A A 105 ? ? 1.533 1.420 0.113 0.010 N 2 1 P A A 106 ? ? OP1 A A 106 ? ? 1.615 1.485 0.130 0.017 N 3 1 P A A 109 ? ? OP1 A A 109 ? ? 1.353 1.485 -0.132 0.017 N 4 1 "C2'" B A 205 ? ? "O2'" B A 205 ? ? 1.507 1.420 0.087 0.010 N 5 1 "C2'" B C 211 ? ? "O2'" B C 211 ? ? 1.499 1.420 0.079 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A A 106 ? ? C8 A A 106 ? ? N9 A A 106 ? ? 110.60 113.80 -3.20 0.50 N 2 1 "O3'" A A 106 ? ? P A 5BU 107 ? A OP2 A 5BU 107 ? A 120.60 110.50 10.10 1.10 Y 3 1 C5 A G 110 ? ? C6 A G 110 ? ? O6 A G 110 ? ? 124.23 128.60 -4.37 0.60 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 270 ? 6.01 . 2 1 O ? B HOH 395 ? 5.99 . 3 1 O ? B HOH 396 ? 6.24 . 4 1 O ? B HOH 397 ? 6.29 . 5 1 O ? B HOH 398 ? 7.10 . 6 1 O ? B HOH 399 ? 7.99 . 7 1 O ? B HOH 400 ? 10.23 . # _ndb_struct_conf_na.entry_id 5V1K _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 12 1_555 0.091 -0.104 0.037 7.088 -8.200 -0.500 1 A_C101:G212_B A 101 ? B 212 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.179 -0.135 -0.093 -2.281 -13.257 0.795 2 A_G102:C211_B A 102 ? B 211 ? 19 1 1 A C 3 1_555 B G 10 1_555 0.267 -0.165 0.030 -3.087 -10.228 0.459 3 A_C103:G210_B A 103 ? B 210 ? 19 1 1 A G 4 1_555 B A 9 1_555 6.881 -4.282 0.160 -1.563 -8.009 -6.018 4 A_G104:A209_B A 104 ? B 209 ? 11 10 1 A A 5 1_555 B 8RJ 8 1_555 0.120 1.139 -0.122 5.376 -8.746 170.792 5 A_A105:8RJ208_B A 105 ? B 208 ? 21 ? 1 A 5BU 7 1_555 B A 6 1_555 0.167 0.049 0.418 3.462 -6.419 -2.053 6 A_5BU107:A206_B A 107 ? B 206 ? 20 1 1 A 8RJ 8 1_555 B A 5 1_555 -0.064 -1.118 0.145 -4.077 11.817 -173.646 7 A_8RJ108:A205_B A 108 ? B 205 ? 21 ? 1 A A 9 1_555 B G 4 1_555 -6.841 -4.298 0.112 4.619 -10.783 -5.349 8 A_A109:G204_B A 109 ? B 204 ? 11 10 1 A G 10 1_555 B C 3 1_555 -0.279 -0.173 -0.008 2.370 -10.070 -0.750 9 A_G110:C203_B A 110 ? B 203 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.108 -0.137 0.017 1.455 -12.769 -0.471 10 A_C111:G202_B A 111 ? B 202 ? 19 1 1 A G 12 1_555 B C 1 1_555 -0.148 -0.109 0.086 -5.614 -9.228 -1.194 11 A_G112:C201_B A 112 ? B 201 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 12 1_555 A G 2 1_555 B C 11 1_555 0.188 -1.711 3.421 -0.279 8.790 32.212 -4.409 -0.374 2.866 15.485 0.492 33.361 1 AA_C101G102:C211G212_BB A 101 ? B 212 ? A 102 ? B 211 ? 1 A G 2 1_555 B C 11 1_555 A C 3 1_555 B G 10 1_555 -0.107 -1.881 3.337 -1.648 0.419 31.288 -3.563 -0.117 3.314 0.777 3.054 31.333 2 AA_G102C103:G210C211_BB A 102 ? B 211 ? A 103 ? B 210 ? 1 A C 3 1_555 B G 10 1_555 A G 4 1_555 B A 9 1_555 -0.119 -0.847 3.429 2.831 4.008 63.758 -0.981 0.240 3.369 3.788 -2.676 63.926 3 AA_C103G104:A209G210_BB A 103 ? B 210 ? A 104 ? B 209 ? 1 A G 4 1_555 B A 9 1_555 A A 5 1_555 B 8RJ 8 1_555 -0.427 -4.324 3.156 -0.569 8.753 -96.937 2.733 -0.294 3.439 -5.837 -0.380 -97.234 4 AA_G104A105:8RJ208A209_BB A 104 ? B 209 ? A 105 ? B 208 ? 1 A 5BU 7 1_555 B A 6 1_555 A 8RJ 8 1_555 B A 5 1_555 2.214 -2.657 2.820 -67.377 -156.435 79.370 -0.075 -1.650 3.006 -79.819 34.378 172.560 5 AA_5BU1078RJ108:A205A206_BB A 107 ? B 206 ? A 108 ? B 205 ? 1 A 8RJ 8 1_555 B A 5 1_555 A A 9 1_555 B G 4 1_555 5.304 1.194 -0.329 110.131 132.736 159.714 0.593 -2.649 0.432 66.413 -55.103 178.676 6 AA_8RJ108A109:G204A205_BB A 108 ? B 205 ? A 109 ? B 204 ? 1 A A 9 1_555 B G 4 1_555 A G 10 1_555 B C 3 1_555 0.047 -0.881 3.526 -3.245 3.993 64.214 -1.009 -0.191 3.466 3.750 3.048 64.398 7 AA_A109G110:C203G204_BB A 109 ? B 204 ? A 110 ? B 203 ? 1 A G 10 1_555 B C 3 1_555 A C 11 1_555 B G 2 1_555 0.154 -1.875 3.420 0.860 -0.060 30.939 -3.501 -0.114 3.426 -0.112 -1.612 30.951 8 AA_G110C111:G202C203_BB A 110 ? B 203 ? A 111 ? B 202 ? 1 A C 11 1_555 B G 2 1_555 A G 12 1_555 B C 1 1_555 -0.227 -1.687 3.329 0.772 7.883 33.115 -4.089 0.506 2.858 13.589 -1.331 34.023 9 AA_C111G112:C201G202_BB A 111 ? B 202 ? A 112 ? B 201 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #