HEADER OXIDOREDUCTASE 06-MAR-17 5V2Y TITLE ETHYLENE FORMING ENZYME IN COMPLEX WITH MANGANESE, 2-OXOGLUTARATE AND TITLE 2 L-ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA-KETOGLUTARIC ACID, 2-KETOGLUTARIC ACID, 2-OXOGLUTARIC ACID, KEYWDS 2 OXOGLUTARIC ACID, ETHYLENE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,S.MARTINEZ,J.HU,R.P.HAUSINGER REVDAT 5 04-OCT-23 5V2Y 1 REMARK REVDAT 4 01-JAN-20 5V2Y 1 REMARK REVDAT 3 27-SEP-17 5V2Y 1 REMARK REVDAT 2 13-SEP-17 5V2Y 1 JRNL REVDAT 1 16-AUG-17 5V2Y 0 JRNL AUTH S.MARTINEZ,M.FELLNER,C.Q.HERR,A.RITCHIE,J.HU,R.P.HAUSINGER JRNL TITL STRUCTURES AND MECHANISMS OF THE NON-HEME FE(II)- AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT ETHYLENE-FORMING ENZYME: SUBSTRATE JRNL TITL 3 BINDING CREATES A TWIST. JRNL REF J. AM. CHEM. SOC. V. 139 11980 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28780854 JRNL DOI 10.1021/JACS.7B06186 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8171 - 4.4371 0.99 3935 213 0.1668 0.1861 REMARK 3 2 4.4371 - 3.5223 1.00 3948 213 0.1300 0.1433 REMARK 3 3 3.5223 - 3.0772 1.00 3938 228 0.1354 0.1474 REMARK 3 4 3.0772 - 2.7959 1.00 3953 246 0.1369 0.1778 REMARK 3 5 2.7959 - 2.5955 1.00 3949 215 0.1273 0.1466 REMARK 3 6 2.5955 - 2.4425 1.00 3931 218 0.1152 0.1413 REMARK 3 7 2.4425 - 2.3202 1.00 3978 213 0.1135 0.1303 REMARK 3 8 2.3202 - 2.2192 1.00 3983 178 0.1076 0.1325 REMARK 3 9 2.2192 - 2.1338 1.00 4015 200 0.1084 0.1527 REMARK 3 10 2.1338 - 2.0602 1.00 3945 208 0.1116 0.1240 REMARK 3 11 2.0602 - 1.9957 1.00 3933 211 0.1092 0.1426 REMARK 3 12 1.9957 - 1.9387 1.00 3991 186 0.1095 0.1422 REMARK 3 13 1.9387 - 1.8877 1.00 4012 187 0.1117 0.1681 REMARK 3 14 1.8877 - 1.8416 1.00 3987 183 0.1106 0.1395 REMARK 3 15 1.8416 - 1.7997 1.00 3899 230 0.1124 0.1542 REMARK 3 16 1.7997 - 1.7614 1.00 4013 184 0.1108 0.1497 REMARK 3 17 1.7614 - 1.7262 1.00 3948 215 0.1190 0.1785 REMARK 3 18 1.7262 - 1.6936 1.00 3990 206 0.1183 0.1497 REMARK 3 19 1.6936 - 1.6634 1.00 3949 212 0.1260 0.1721 REMARK 3 20 1.6634 - 1.6352 1.00 4001 186 0.1300 0.1536 REMARK 3 21 1.6352 - 1.6088 1.00 3972 183 0.1330 0.1810 REMARK 3 22 1.6088 - 1.5840 1.00 3988 186 0.1395 0.2006 REMARK 3 23 1.5840 - 1.5608 1.00 3933 184 0.1441 0.1761 REMARK 3 24 1.5608 - 1.5388 1.00 4026 205 0.1526 0.2153 REMARK 3 25 1.5388 - 1.5180 1.00 3924 227 0.1615 0.1904 REMARK 3 26 1.5180 - 1.4983 1.00 4026 181 0.1710 0.1914 REMARK 3 27 1.4983 - 1.4795 1.00 3991 200 0.1794 0.2239 REMARK 3 28 1.4795 - 1.4617 1.00 3921 216 0.2024 0.2465 REMARK 3 29 1.4617 - 1.4447 1.00 3938 224 0.2154 0.2624 REMARK 3 30 1.4447 - 1.4285 0.91 3560 234 0.2487 0.2713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2895 REMARK 3 ANGLE : 0.949 3936 REMARK 3 CHIRALITY : 0.075 413 REMARK 3 PLANARITY : 0.007 523 REMARK 3 DIHEDRAL : 14.864 1072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.428 REMARK 200 RESOLUTION RANGE LOW (A) : 43.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5V2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL 64 MG/ML EFE (+4 MM MANGANESE REMARK 280 CHLORIDE, 25 MM HEPES PH 8.0, 1 MM TCEP, 2.5 MM 2-OXOGLUTARATE, REMARK 280 2.5 MM L-ARGININE) WAS MIXED WITH 0.2 UL RESERVOIR SOLUTION. THE REMARK 280 SITTING DROP RESERVOIR OF 50 UL CONTAINED 0.2 M SODIUM CHLORIDE, REMARK 280 0.1 M BIS-TRIS PH 6.5, 25% W/V POLYETHYLENE GLYCOL 3,350. THE REMARK 280 CRYSTAL WAS SOAKED FOR ABOUT A MINUTE IN 25% W/V POLYETHYLENE REMARK 280 GLYCOL 400, 75% RESERVOIR SOLUTION BEFORE FREEZING IT., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.23950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.79650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.05800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.79650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.23950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.05800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 ARG A 346 REMARK 465 ALA A 347 REMARK 465 THR A 348 REMARK 465 GLY A 349 REMARK 465 SER A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 746 O HOH A 754 1.95 REMARK 500 O HOH A 794 O HOH A 822 2.00 REMARK 500 O HOH A 514 O HOH A 731 2.04 REMARK 500 O HOH A 804 O HOH A 813 2.04 REMARK 500 O HOH A 773 O HOH A 806 2.08 REMARK 500 O HOH A 759 O HOH A 785 2.09 REMARK 500 O HOH A 768 O HOH A 845 2.11 REMARK 500 O HOH A 669 O HOH A 765 2.16 REMARK 500 O HOH A 660 O HOH A 836 2.17 REMARK 500 O HOH A 554 O HOH A 746 2.17 REMARK 500 O HOH A 599 O HOH A 753 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 167 47.73 -81.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 191 TYR A 192 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 853 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD1 82.6 REMARK 620 3 ASP A 191 OD2 121.1 52.6 REMARK 620 4 HIS A 268 NE2 86.7 115.9 82.3 REMARK 620 5 AKG A 403 O1 107.7 91.9 109.6 150.5 REMARK 620 6 AKG A 403 O5 103.8 163.8 130.2 79.7 72.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V2T RELATED DB: PDB REMARK 900 RELATED ID: 5V2U RELATED DB: PDB REMARK 900 RELATED ID: 5V2V RELATED DB: PDB REMARK 900 RELATED ID: 5V2X RELATED DB: PDB REMARK 900 RELATED ID: 5V2Z RELATED DB: PDB REMARK 900 RELATED ID: 5V31 RELATED DB: PDB REMARK 900 RELATED ID: 5V32 RELATED DB: PDB REMARK 900 RELATED ID: 5V34 RELATED DB: PDB DBREF 5V2Y A 1 350 UNP P32021 EFE_PSESH 1 350 SEQADV 5V2Y SER A -1 UNP P32021 EXPRESSION TAG SEQADV 5V2Y HIS A 0 UNP P32021 EXPRESSION TAG SEQRES 1 A 352 SER HIS MET THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 A 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 A 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 A 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 A 352 ALA MET ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 A 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 A 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 A 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 A 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 A 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 A 352 SER MET LYS THR PHE MET GLU GLU LEU GLY LEU ALA GLY SEQRES 12 A 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 A 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 A 352 HIS HIS MET ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 A 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 A 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 A 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 A 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MET PHE GLU SEQRES 19 A 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 A 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MET SEQRES 21 A 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 A 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 A 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 A 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 A 352 THR ASN MET PHE MET ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 A 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 A 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 A 352 SER HET MN A 401 1 HET ARG A 402 27 HET AKG A 403 14 HETNAM MN MANGANESE (II) ION HETNAM ARG ARGININE HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 MN MN 2+ FORMUL 3 ARG C6 H15 N4 O2 1+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 HOH *353(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 CYS A 69 1 8 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 PHE A 159 THR A 163 5 5 HELIX 7 AA7 GLY A 252 THR A 259 1 8 HELIX 8 AA8 TYR A 306 TYR A 318 1 13 HELIX 9 AA9 ARG A 321 ASN A 331 1 11 HELIX 10 AB1 ASN A 331 LYS A 340 1 10 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O LYS A 39 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N VAL A 196 O PHE A 250 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N PHE A 175 O ARG A 277 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N VAL A 98 O MET A 170 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N VAL A 79 O ILE A 95 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O VAL A 270 N GLY A 185 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 LINK NE2 HIS A 189 MN MN A 401 1555 1555 2.23 LINK OD1 ASP A 191 MN MN A 401 1555 1555 2.70 LINK OD2 ASP A 191 MN MN A 401 1555 1555 2.17 LINK NE2 HIS A 268 MN MN A 401 1555 1555 2.20 LINK MN MN A 401 O1 AKG A 403 1555 1555 2.09 LINK MN MN A 401 O5 AKG A 403 1555 1555 2.29 CISPEP 1 GLU A 235 PRO A 236 0 1.86 SITE 1 AC1 4 HIS A 189 ASP A 191 HIS A 268 AKG A 403 SITE 1 AC2 12 GLU A 84 VAL A 85 THR A 86 ARG A 171 SITE 2 AC2 12 HIS A 189 ASP A 191 TYR A 192 PHE A 314 SITE 3 AC2 12 ARG A 316 CYS A 317 HOH A 564 HOH A 590 SITE 1 AC3 11 ARG A 171 LEU A 173 PHE A 175 HIS A 189 SITE 2 AC3 11 ASP A 191 HIS A 268 VAL A 270 ARG A 277 SITE 3 AC3 11 ALA A 279 MN A 401 HOH A 561 CRYST1 48.479 82.116 87.593 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011416 0.00000