HEADER OXIDOREDUCTASE 06-MAR-17 5V2Z TITLE ETHYLENE FORMING ENZYME IN COMPLEX WITH MANGANESE, 2-OXOADIPIC ACID TITLE 2 AND L-ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS 2-OXOADIPIC ACID, ALPHA-KETOADIPIC ACID, 2-OXOHEXANEDIOIC ACID, 2- KEYWDS 2 OXOADIPATE, ETHYLENE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,S.MARTINEZ,J.HU,R.P.HAUSINGER REVDAT 5 04-OCT-23 5V2Z 1 REMARK REVDAT 4 01-JAN-20 5V2Z 1 REMARK REVDAT 3 27-SEP-17 5V2Z 1 REMARK REVDAT 2 13-SEP-17 5V2Z 1 JRNL REVDAT 1 16-AUG-17 5V2Z 0 JRNL AUTH S.MARTINEZ,M.FELLNER,C.Q.HERR,A.RITCHIE,J.HU,R.P.HAUSINGER JRNL TITL STRUCTURES AND MECHANISMS OF THE NON-HEME FE(II)- AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT ETHYLENE-FORMING ENZYME: SUBSTRATE JRNL TITL 3 BINDING CREATES A TWIST. JRNL REF J. AM. CHEM. SOC. V. 139 11980 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28780854 JRNL DOI 10.1021/JACS.7B06186 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 96252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7183 - 3.8209 0.98 6117 301 0.1444 0.1586 REMARK 3 2 3.8209 - 3.0331 1.00 6241 250 0.1327 0.1604 REMARK 3 3 3.0331 - 2.6498 1.00 6143 346 0.1364 0.1557 REMARK 3 4 2.6498 - 2.4075 1.00 6233 260 0.1239 0.1311 REMARK 3 5 2.4075 - 2.2350 1.00 6236 300 0.1207 0.1461 REMARK 3 6 2.2350 - 2.1032 1.00 6151 333 0.1223 0.1382 REMARK 3 7 2.1032 - 1.9979 1.00 6242 280 0.1203 0.1460 REMARK 3 8 1.9979 - 1.9109 1.00 6273 276 0.1220 0.1451 REMARK 3 9 1.9109 - 1.8373 1.00 6174 331 0.1199 0.1291 REMARK 3 10 1.8373 - 1.7739 1.00 6214 301 0.1230 0.1558 REMARK 3 11 1.7739 - 1.7185 1.00 6109 378 0.1291 0.1458 REMARK 3 12 1.7185 - 1.6693 1.00 6147 336 0.1310 0.1387 REMARK 3 13 1.6693 - 1.6254 1.00 6199 353 0.1303 0.1619 REMARK 3 14 1.6254 - 1.5857 1.00 6164 322 0.1315 0.1496 REMARK 3 15 1.5857 - 1.5497 1.00 6208 331 0.1322 0.1480 REMARK 3 16 1.5497 - 1.5167 1.00 6081 348 0.1417 0.1545 REMARK 3 17 1.5167 - 1.4864 1.00 6164 354 0.1475 0.1678 REMARK 3 18 1.4864 - 1.4583 1.00 6255 291 0.1541 0.1710 REMARK 3 19 1.4583 - 1.4323 1.00 6141 325 0.1572 0.1688 REMARK 3 20 1.4323 - 1.4080 1.00 6187 328 0.1665 0.1836 REMARK 3 21 1.4080 - 1.3853 1.00 6173 293 0.1669 0.2018 REMARK 3 22 1.3853 - 1.3640 1.00 6232 317 0.1722 0.1796 REMARK 3 23 1.3640 - 1.3439 1.00 6205 274 0.1705 0.1743 REMARK 3 24 1.3439 - 1.3250 1.00 6237 315 0.1772 0.1872 REMARK 3 25 1.3250 - 1.3071 1.00 6102 325 0.1857 0.1911 REMARK 3 26 1.3071 - 1.2901 0.99 6250 319 0.2014 0.2272 REMARK 3 27 1.2901 - 1.2740 0.97 5955 324 0.2187 0.2275 REMARK 3 28 1.2740 - 1.2586 0.94 5854 334 0.2339 0.2468 REMARK 3 29 1.2586 - 1.2440 0.88 5367 308 0.2575 0.2699 REMARK 3 30 1.2440 - 1.2300 0.81 5023 274 0.2639 0.2607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3033 REMARK 3 ANGLE : 1.110 4138 REMARK 3 CHIRALITY : 0.094 433 REMARK 3 PLANARITY : 0.009 557 REMARK 3 DIHEDRAL : 15.166 1130 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.323 4.245 2.321 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0449 REMARK 3 T33: 0.0754 T12: -0.0060 REMARK 3 T13: 0.0081 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7038 L22: 0.2199 REMARK 3 L33: 1.5486 L12: 0.0871 REMARK 3 L13: 0.6497 L23: 0.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0115 S13: 0.0579 REMARK 3 S21: -0.0106 S22: 0.0122 S23: -0.0243 REMARK 3 S31: -0.0840 S32: 0.0182 S33: 0.0265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 94:175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.227 -1.740 9.239 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.0688 REMARK 3 T33: 0.0624 T12: -0.0052 REMARK 3 T13: 0.0042 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3370 L22: 0.3299 REMARK 3 L33: 1.4177 L12: 0.0421 REMARK 3 L13: 0.2594 L23: 0.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0350 S13: 0.0021 REMARK 3 S21: 0.0138 S22: -0.0035 S23: 0.0130 REMARK 3 S31: 0.0435 S32: -0.1178 S33: 0.0102 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 176:317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.459 -5.075 -2.278 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0708 REMARK 3 T33: 0.0798 T12: 0.0061 REMARK 3 T13: 0.0024 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.6848 L22: 0.5592 REMARK 3 L33: 1.1442 L12: 0.0917 REMARK 3 L13: 0.2441 L23: 0.1721 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0914 S13: -0.0577 REMARK 3 S21: -0.0241 S22: 0.0526 S23: -0.0973 REMARK 3 S31: 0.0954 S32: 0.1305 S33: -0.0385 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 318:350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.819 -17.155 17.456 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.1776 REMARK 3 T33: 0.2077 T12: -0.0402 REMARK 3 T13: -0.0262 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.6628 L22: 3.0503 REMARK 3 L33: 2.0940 L12: 1.3938 REMARK 3 L13: 1.2931 L23: 0.5891 REMARK 3 S TENSOR REMARK 3 S11: 0.2120 S12: -0.1208 S13: -0.5223 REMARK 3 S21: 0.2017 S22: -0.0397 S23: 0.1188 REMARK 3 S31: 0.5227 S32: -0.3812 S33: -0.1393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 403:403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.247 -5.805 4.810 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1528 REMARK 3 T33: 0.1375 T12: 0.0163 REMARK 3 T13: -0.0006 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.0017 L22: 1.9962 REMARK 3 L33: 2.0002 L12: 1.9955 REMARK 3 L13: 1.9999 L23: 1.9952 REMARK 3 S TENSOR REMARK 3 S11: 0.2262 S12: 0.1779 S13: -0.1884 REMARK 3 S21: 0.0336 S22: -0.0967 S23: -0.0515 REMARK 3 S31: 0.1541 S32: 0.1633 S33: -0.0892 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1272 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5V2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL 64 MG/ML EFE (+1 MM MANGANESE REMARK 280 CHLORIDE, 25 MM HEPES PH 8.0, 1 MM TCEP, +3 MM L-ARGININE, +3 MM REMARK 280 2-OXOADIPIC ACID) WAS MIXED WITH 0.2 UL RESERVOIR SOLUTION. THE REMARK 280 SITTING DROP RESERVOIR OF 200 UL CONTAINED 25% PEG 3350, 100 MM REMARK 280 BIS-TRIS, PH 6.5, 200 MM NACL. THE CRYSTAL WAS SOAKED FOR ABOUT REMARK 280 A MINUTE IN 25% W/V POLYETHYLENE GLYCOL 400, 75% RESERVOIR REMARK 280 SOLUTION BEFORE FREEZING IT., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 744 O HOH A 783 1.95 REMARK 500 O HOH A 918 O HOH A 933 1.96 REMARK 500 O HOH A 804 O HOH A 828 2.02 REMARK 500 O HOH A 689 O HOH A 926 2.04 REMARK 500 O HOH A 570 O HOH A 919 2.05 REMARK 500 O HOH A 802 O HOH A 932 2.07 REMARK 500 O HOH A 716 O HOH A 806 2.08 REMARK 500 O HOH A 622 O HOH A 782 2.08 REMARK 500 O HOH A 802 O HOH A 837 2.11 REMARK 500 O HOH A 586 O HOH A 779 2.16 REMARK 500 O HOH A 554 O HOH A 888 2.16 REMARK 500 O HOH A 713 O HOH A 817 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 692 O HOH A 777 4445 1.77 REMARK 500 O HOH A 786 O HOH A 825 4545 2.03 REMARK 500 OG1 THR A 64 OH TYR A 342 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 167 46.85 -81.05 REMARK 500 GLU A 225 50.21 -140.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 191 TYR A 192 -145.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 939 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD1 84.7 REMARK 620 3 ASP A 191 OD2 124.0 54.5 REMARK 620 4 HIS A 268 NE2 88.0 119.2 82.5 REMARK 620 5 OOG A 402 O3 114.4 94.2 106.1 142.0 REMARK 620 6 OOG A 402 O5 87.4 159.2 143.2 79.6 71.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V2T RELATED DB: PDB REMARK 900 RELATED ID: 5V2U RELATED DB: PDB REMARK 900 RELATED ID: 5V2V RELATED DB: PDB REMARK 900 RELATED ID: 5V2X RELATED DB: PDB REMARK 900 RELATED ID: 5V2Y RELATED DB: PDB REMARK 900 RELATED ID: 5V31 RELATED DB: PDB REMARK 900 RELATED ID: 5V32 RELATED DB: PDB REMARK 900 RELATED ID: 5V34 RELATED DB: PDB DBREF 5V2Z A 1 350 UNP P32021 EFE_PSESH 1 350 SEQADV 5V2Z SER A -1 UNP P32021 EXPRESSION TAG SEQADV 5V2Z HIS A 0 UNP P32021 EXPRESSION TAG SEQRES 1 A 352 SER HIS MET THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 A 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 A 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 A 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 A 352 ALA MET ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 A 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 A 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 A 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 A 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 A 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 A 352 SER MET LYS THR PHE MET GLU GLU LEU GLY LEU ALA GLY SEQRES 12 A 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 A 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 A 352 HIS HIS MET ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 A 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 A 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 A 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 A 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MET PHE GLU SEQRES 19 A 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 A 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MET SEQRES 21 A 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 A 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 A 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 A 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 A 352 THR ASN MET PHE MET ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 A 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 A 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 A 352 SER HET MN A 401 1 HET OOG A 402 17 HET ARG A 403 27 HETNAM MN MANGANESE (II) ION HETNAM OOG 2-OXOADIPIC ACID HETNAM ARG ARGININE FORMUL 2 MN MN 2+ FORMUL 3 OOG C6 H8 O5 FORMUL 4 ARG C6 H15 N4 O2 1+ FORMUL 5 HOH *439(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 CYS A 69 1 8 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 PHE A 159 THR A 163 5 5 HELIX 7 AA7 LEU A 222 SER A 226 5 5 HELIX 8 AA8 GLY A 252 THR A 259 1 8 HELIX 9 AA9 TYR A 306 TYR A 318 1 13 HELIX 10 AB1 ARG A 321 GLU A 330 1 10 HELIX 11 AB2 ASN A 331 SER A 343 1 13 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O GLN A 37 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N ALA A 198 O THR A 248 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N PHE A 175 O ARG A 277 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N VAL A 98 O MET A 170 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N VAL A 79 O ILE A 95 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O VAL A 270 N GLY A 185 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 LINK NE2 HIS A 189 MN MN A 401 1555 1555 2.18 LINK OD1 ASP A 191 MN MN A 401 1555 1555 2.59 LINK OD2 ASP A 191 MN MN A 401 1555 1555 2.16 LINK NE2 HIS A 268 MN MN A 401 1555 1555 2.20 LINK MN MN A 401 O3 OOG A 402 1555 1555 2.06 LINK MN MN A 401 O5 OOG A 402 1555 1555 2.43 CISPEP 1 GLU A 235 PRO A 236 0 1.92 SITE 1 AC1 4 HIS A 189 ASP A 191 HIS A 268 OOG A 402 SITE 1 AC2 13 ARG A 171 LEU A 173 PHE A 175 HIS A 189 SITE 2 AC2 13 ASP A 191 LEU A 206 HIS A 268 VAL A 270 SITE 3 AC2 13 ARG A 277 ALA A 279 PHE A 283 MN A 401 SITE 4 AC2 13 HOH A 534 SITE 1 AC3 12 GLU A 84 VAL A 85 THR A 86 ARG A 171 SITE 2 AC3 12 HIS A 189 ASP A 191 TYR A 192 PHE A 314 SITE 3 AC3 12 ARG A 316 CYS A 317 HOH A 538 HOH A 593 CRYST1 48.450 81.860 87.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011419 0.00000