HEADER OXIDOREDUCTASE 06-MAR-17 5V34 TITLE ETHYLENE FORMING ENZYME IN COMPLEX WITH MANGANESE, MALIC ACID AND L- TITLE 2 ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ETHYLENE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,S.MARTINEZ,J.HU,R.P.HAUSINGER REVDAT 5 04-OCT-23 5V34 1 LINK REVDAT 4 01-JAN-20 5V34 1 REMARK REVDAT 3 27-SEP-17 5V34 1 REMARK REVDAT 2 13-SEP-17 5V34 1 JRNL REVDAT 1 16-AUG-17 5V34 0 JRNL AUTH S.MARTINEZ,M.FELLNER,C.Q.HERR,A.RITCHIE,J.HU,R.P.HAUSINGER JRNL TITL STRUCTURES AND MECHANISMS OF THE NON-HEME FE(II)- AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT ETHYLENE-FORMING ENZYME: SUBSTRATE JRNL TITL 3 BINDING CREATES A TWIST. JRNL REF J. AM. CHEM. SOC. V. 139 11980 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28780854 JRNL DOI 10.1021/JACS.7B06186 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 72267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 7113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6989 - 4.5970 1.00 4735 188 0.1525 0.1634 REMARK 3 2 4.5970 - 3.6493 1.00 4742 231 0.1228 0.1302 REMARK 3 3 3.6493 - 3.1882 0.88 4184 193 0.1346 0.1454 REMARK 3 4 3.1882 - 2.8968 1.00 4609 306 0.1294 0.1461 REMARK 3 5 2.8968 - 2.6892 0.99 4702 223 0.1178 0.1559 REMARK 3 6 2.6892 - 2.5306 0.99 4740 218 0.1109 0.1550 REMARK 3 7 2.5306 - 2.4039 0.99 4702 192 0.1084 0.1411 REMARK 3 8 2.4039 - 2.2993 0.99 4585 270 0.1074 0.1528 REMARK 3 9 2.2993 - 2.2108 0.99 4706 244 0.1081 0.1393 REMARK 3 10 2.2108 - 2.1345 0.99 4595 260 0.1112 0.1436 REMARK 3 11 2.1345 - 2.0677 0.99 4674 260 0.1143 0.1378 REMARK 3 12 2.0677 - 2.0086 0.99 4645 243 0.1146 0.1501 REMARK 3 13 2.0086 - 1.9558 0.99 4652 236 0.1159 0.1572 REMARK 3 14 1.9558 - 1.9080 0.98 4579 242 0.1247 0.1482 REMARK 3 15 1.9080 - 1.8647 0.88 4090 211 0.1316 0.1691 REMARK 3 16 1.8647 - 1.8250 0.98 4623 250 0.1401 0.1609 REMARK 3 17 1.8250 - 1.7885 0.98 4589 230 0.1386 0.1988 REMARK 3 18 1.7885 - 1.7547 0.98 4587 296 0.1481 0.1767 REMARK 3 19 1.7547 - 1.7234 0.98 4607 238 0.1452 0.1924 REMARK 3 20 1.7234 - 1.6942 0.98 4622 218 0.1545 0.1965 REMARK 3 21 1.6942 - 1.6668 0.97 4632 202 0.1538 0.1760 REMARK 3 22 1.6668 - 1.6412 0.97 4538 207 0.1637 0.2065 REMARK 3 23 1.6412 - 1.6171 0.97 4546 269 0.1796 0.2133 REMARK 3 24 1.6171 - 1.5943 0.97 4597 242 0.1975 0.2703 REMARK 3 25 1.5943 - 1.5727 0.97 4557 241 0.2082 0.2165 REMARK 3 26 1.5727 - 1.5523 0.97 4634 233 0.2158 0.2498 REMARK 3 27 1.5523 - 1.5329 0.97 4529 197 0.2305 0.2336 REMARK 3 28 1.5329 - 1.5144 0.96 4569 255 0.2648 0.2622 REMARK 3 29 1.5144 - 1.4968 0.96 4475 240 0.2787 0.3639 REMARK 3 30 1.4968 - 1.4800 0.95 4376 278 0.2814 0.3266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2883 REMARK 3 ANGLE : 1.029 3914 REMARK 3 CHIRALITY : 0.078 416 REMARK 3 PLANARITY : 0.008 517 REMARK 3 DIHEDRAL : 14.850 1064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1272 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 61.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.05400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5V2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL 64 MG/ML EFE (+1 MM MANGANESE REMARK 280 CHLORIDE, 25 MM HEPES PH 8.0, 1 MM TCEP, +2.5 MM L-ARGININE) WAS REMARK 280 MIXED WITH 0.2 UL RESERVOIR SOLUTION. THE SITTING DROP RESERVOIR REMARK 280 OF 50 UL CONTAINED 25% PEG 1500 AND 0.1 M MMT BUFFER, PH 6.5. REMARK 280 THE CRYSTAL WAS SOAKED FOR ABOUT A MINUTE IN 25% W/V REMARK 280 POLYETHYLENE GLYCOL 400, 75% RESERVOIR SOLUTION BEFORE FREEZING REMARK 280 IT., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.76667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.76667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 543 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 956 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 TYR A 342 REMARK 465 SER A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 ARG A 346 REMARK 465 ALA A 347 REMARK 465 THR A 348 REMARK 465 GLY A 349 REMARK 465 SER A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 523 O HOH A 767 1.90 REMARK 500 O HOH A 867 O HOH A 950 1.92 REMARK 500 O HOH A 656 O HOH A 808 1.96 REMARK 500 O HOH A 760 O HOH A 776 2.05 REMARK 500 O HOH A 633 O HOH A 914 2.11 REMARK 500 O HOH A 966 O HOH A 968 2.15 REMARK 500 O HOH A 662 O HOH A 800 2.15 REMARK 500 O HOH A 518 O HOH A 874 2.17 REMARK 500 O HOH A 841 O HOH A 930 2.18 REMARK 500 O HOH A 627 O HOH A 832 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 115 -2.13 80.17 REMARK 500 TRP A 167 48.60 -82.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 191 TYR A 192 -144.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 970 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 971 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD2 109.8 REMARK 620 3 HIS A 268 NE2 84.8 84.9 REMARK 620 4 MLT A 403 O4 93.9 156.3 96.4 REMARK 620 5 HOH A 511 O 103.3 91.8 171.9 83.6 REMARK 620 6 HOH A 597 O 165.3 83.0 89.3 73.4 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V2T RELATED DB: PDB REMARK 900 RELATED ID: 5V2U RELATED DB: PDB REMARK 900 RELATED ID: 5V2V RELATED DB: PDB REMARK 900 RELATED ID: 5V2X RELATED DB: PDB REMARK 900 RELATED ID: 5V2Y RELATED DB: PDB REMARK 900 RELATED ID: 5V2Z RELATED DB: PDB REMARK 900 RELATED ID: 5V31 RELATED DB: PDB REMARK 900 RELATED ID: 5V32 RELATED DB: PDB DBREF 5V34 A 1 350 UNP P32021 EFE_PSESH 1 350 SEQADV 5V34 SER A -1 UNP P32021 EXPRESSION TAG SEQADV 5V34 HIS A 0 UNP P32021 EXPRESSION TAG SEQRES 1 A 352 SER HIS MET THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 A 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 A 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 A 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 A 352 ALA MET ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 A 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 A 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 A 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 A 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 A 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 A 352 SER MET LYS THR PHE MET GLU GLU LEU GLY LEU ALA GLY SEQRES 12 A 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 A 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 A 352 HIS HIS MET ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 A 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 A 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 A 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 A 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MET PHE GLU SEQRES 19 A 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 A 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MET SEQRES 21 A 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 A 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 A 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 A 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 A 352 THR ASN MET PHE MET ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 A 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 A 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 A 352 SER HET ARG A 401 27 HET MN A 402 1 HET MLT A 403 13 HETNAM ARG ARGININE HETNAM MN MANGANESE (II) ION HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 2 ARG C6 H15 N4 O2 1+ FORMUL 3 MN MN 2+ FORMUL 4 MLT C4 H6 O5 FORMUL 5 HOH *473(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 CYS A 69 1 8 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 PHE A 159 THR A 163 5 5 HELIX 7 AA7 GLY A 252 THR A 259 1 8 HELIX 8 AA8 TYR A 306 TYR A 318 1 13 HELIX 9 AA9 ARG A 321 GLU A 330 1 10 HELIX 10 AB1 ARG A 332 LYS A 340 1 9 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O GLN A 37 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N ALA A 198 O THR A 248 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N HIS A 169 O PHE A 283 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N VAL A 98 O MET A 170 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N VAL A 79 O ILE A 95 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O VAL A 270 N GLY A 185 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 LINK NE2 HIS A 189 MN MN A 402 1555 1555 2.25 LINK OD2 ASP A 191 MN MN A 402 1555 1555 2.12 LINK NE2 HIS A 268 MN MN A 402 1555 1555 2.19 LINK MN MN A 402 O4 MLT A 403 1555 1555 2.19 LINK MN MN A 402 O HOH A 511 1555 1555 2.12 LINK MN MN A 402 O HOH A 597 1555 1555 2.35 CISPEP 1 GLU A 235 PRO A 236 0 -0.22 SITE 1 AC1 12 GLU A 84 VAL A 85 THR A 86 ARG A 171 SITE 2 AC1 12 HIS A 189 ASP A 191 TYR A 192 PHE A 314 SITE 3 AC1 12 ARG A 316 CYS A 317 HOH A 578 HOH A 625 SITE 1 AC2 6 HIS A 189 ASP A 191 HIS A 268 MLT A 403 SITE 2 AC2 6 HOH A 511 HOH A 597 SITE 1 AC3 12 ARG A 171 LEU A 173 PHE A 175 ILE A 186 SITE 2 AC3 12 HIS A 189 HIS A 268 VAL A 270 ARG A 277 SITE 3 AC3 12 MN A 402 HOH A 511 HOH A 597 HOH A 647 CRYST1 87.360 87.360 104.300 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011447 0.006609 0.000000 0.00000 SCALE2 0.000000 0.013218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009588 0.00000