HEADER RNA 07-MAR-17 5V3F TITLE CO-CRYSTAL STRUCTURE OF THE FLUOROGENIC RNA MANGO COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (31-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS QUADRUPLEX FLUORESCENT RNA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 4 06-MAR-24 5V3F 1 LINK REVDAT 3 28-JUN-17 5V3F 1 JRNL REVDAT 2 14-JUN-17 5V3F 1 JRNL REVDAT 1 24-MAY-17 5V3F 0 JRNL AUTH R.J.TRACHMAN,N.A.DEMESHKINA,M.W.L.LAU,S.S.S.PANCHAPAKESAN, JRNL AUTH 2 S.C.Y.JENG,P.J.UNRAU,A.R.FERRE-D'AMARE JRNL TITL STRUCTURAL BASIS FOR HIGH-AFFINITY FLUOROPHORE BINDING AND JRNL TITL 2 ACTIVATION BY RNA MANGO. JRNL REF NAT. CHEM. BIOL. V. 13 807 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28553947 JRNL DOI 10.1038/NCHEMBIO.2392 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 29469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6856 - 4.0969 1.00 2315 165 0.1817 0.1782 REMARK 3 2 4.0969 - 3.2520 1.00 2172 154 0.1733 0.1799 REMARK 3 3 3.2520 - 2.8410 1.00 2139 151 0.2037 0.2005 REMARK 3 4 2.8410 - 2.5813 1.00 2122 151 0.2293 0.2404 REMARK 3 5 2.5813 - 2.3963 1.00 2111 150 0.2198 0.2296 REMARK 3 6 2.3963 - 2.2550 0.99 2069 146 0.1996 0.2233 REMARK 3 7 2.2550 - 2.1421 0.99 2094 149 0.1944 0.2132 REMARK 3 8 2.1421 - 2.0488 0.99 2067 148 0.1995 0.2398 REMARK 3 9 2.0488 - 1.9700 0.99 2057 145 0.2147 0.2547 REMARK 3 10 1.9700 - 1.9020 0.99 2038 145 0.2135 0.2470 REMARK 3 11 1.9020 - 1.8425 0.99 2068 147 0.2275 0.2719 REMARK 3 12 1.8425 - 1.7898 0.94 1944 138 0.2673 0.3046 REMARK 3 13 1.7898 - 1.7427 0.68 1402 100 0.2861 0.3104 REMARK 3 14 1.7427 - 1.7002 0.45 917 65 0.3096 0.2926 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1365 REMARK 3 ANGLE : 1.529 2105 REMARK 3 CHIRALITY : 0.077 253 REMARK 3 PLANARITY : 0.012 62 REMARK 3 DIHEDRAL : 19.475 663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.9236 89.9113 153.5213 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.2654 REMARK 3 T33: 0.2768 T12: -0.0039 REMARK 3 T13: -0.0035 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.9376 L22: 1.1172 REMARK 3 L33: 0.5884 L12: -0.3273 REMARK 3 L13: -0.0415 L23: 0.1052 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.0202 S13: -0.0196 REMARK 3 S21: 0.0770 S22: 0.0248 S23: 0.0295 REMARK 3 S31: -0.0369 S32: -0.1084 S33: 0.0186 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29469 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: TETRAGONAL BIPYRAMIDAL CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES PH 7.5, 0.25 M KCL, 1.4 REMARK 280 AMMONIUM ACETATE, 2.5 MM BARIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.20650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.59950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.59950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.60325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.59950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.59950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.80975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.59950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.59950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.60325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.59950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.59950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.80975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.20650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B 1 REMARK 465 U B 2 REMARK 465 G B 3 REMARK 465 C B 4 REMARK 465 G B 5 REMARK 465 A B 6 REMARK 465 A B 7 REMARK 465 A B 27 REMARK 465 G B 28 REMARK 465 C B 29 REMARK 465 A B 30 REMARK 465 C B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 264 O HOH A 289 7467 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 8 O5' - P - OP1 ANGL. DEV. = 7.4 DEGREES REMARK 500 G A 8 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 G A 10 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G B 10 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 294 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 255 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 O6 REMARK 620 2 G A 13 O6 69.4 REMARK 620 3 G A 18 O6 113.1 70.8 REMARK 620 4 G A 23 O6 71.7 105.4 69.9 REMARK 620 5 G B 8 O6 129.4 75.7 87.4 154.9 REMARK 620 6 G B 13 O6 74.9 96.2 159.5 130.1 73.7 REMARK 620 7 G B 18 O6 89.6 157.8 126.7 73.2 115.3 70.4 REMARK 620 8 G B 23 O6 159.5 129.2 72.0 92.8 69.3 107.5 72.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 O6 REMARK 620 2 G A 9 O6 81.8 REMARK 620 3 G A 13 O6 67.9 86.2 REMARK 620 4 G A 14 O6 136.0 67.3 79.2 REMARK 620 5 G A 18 O6 101.1 151.1 68.9 92.9 REMARK 620 6 G A 19 O6 152.1 107.8 137.2 70.3 83.1 REMARK 620 7 G A 23 O6 69.9 137.7 109.9 152.1 67.8 86.9 REMARK 620 8 G A 24 O6 90.6 70.1 150.4 106.3 138.0 69.4 79.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 9 O6 REMARK 620 2 G A 10 O6 78.5 REMARK 620 3 G A 14 O6 66.6 73.2 REMARK 620 4 G A 16 O6 150.0 77.0 89.7 REMARK 620 5 G A 19 O6 102.2 134.1 65.7 83.1 REMARK 620 6 G A 21 O6 133.3 128.5 148.5 76.3 84.5 REMARK 620 7 G A 24 O6 66.7 144.8 96.9 137.7 62.5 76.7 REMARK 620 8 G A 26 O6 80.6 75.3 138.1 109.2 150.7 73.4 93.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 8 O6 REMARK 620 2 G B 9 O6 83.0 REMARK 620 3 G B 13 O6 68.5 89.4 REMARK 620 4 G B 14 O6 138.1 69.0 80.4 REMARK 620 5 G B 18 O6 99.9 152.4 66.8 92.4 REMARK 620 6 G B 19 O6 152.2 107.1 135.6 68.7 83.1 REMARK 620 7 G B 23 O6 65.8 133.4 108.3 154.4 70.5 89.9 REMARK 620 8 G B 24 O6 89.9 67.9 150.8 106.5 139.1 71.2 78.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 9 O6 REMARK 620 2 G B 10 O6 79.7 REMARK 620 3 G B 14 O6 68.3 74.9 REMARK 620 4 G B 16 O6 151.9 77.4 90.1 REMARK 620 5 G B 19 O6 103.2 133.4 63.9 81.5 REMARK 620 6 G B 21 O6 135.2 126.9 145.5 72.5 83.8 REMARK 620 7 G B 24 O6 66.2 145.0 98.0 137.4 65.5 77.8 REMARK 620 8 G B 26 O6 81.4 75.0 140.4 107.8 151.6 74.1 92.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 74G A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 74G B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide PO4 B 105 and G B REMARK 800 26 DBREF 5V3F A 1 31 PDB 5V3F 5V3F 1 31 DBREF 5V3F B 1 31 PDB 5V3F 5V3F 1 31 SEQRES 1 A 31 G U G C G A A G G G A C G SEQRES 2 A 31 G U G C G G A G A G G A G SEQRES 3 A 31 A G C A C SEQRES 1 B 31 G U G C G A A G G G A C G SEQRES 2 B 31 G U G C G G A G A G G A G SEQRES 3 B 31 A G C A C HET K A 101 1 HET K A 102 1 HET K A 103 1 HET 74G A 104 52 HET K B 101 1 HET K B 102 1 HET K B 103 1 HET 74G B 104 52 HET PO4 B 105 4 HET PO4 B 106 5 HETNAM K POTASSIUM ION HETNAM 74G 4-{[(2S)-3-{2,16-DIOXO-20-[(3AS,4S,6AR)-2-OXOHEXAHYDRO- HETNAM 2 74G 1H-THIENO[3,4-D]IMIDAZOL-4-YL]-6,9,12-TRIOXA-3,15- HETNAM 3 74G DIAZAICOSAN-1-YL}-2,3-DIHYDRO-1,3-BENZOTHIAZOL-2- HETNAM 4 74G YL]METHYL}-1-METHYLQUINOLIN-1-IUM HETNAM PO4 PHOSPHATE ION FORMUL 3 K 6(K 1+) FORMUL 6 74G 2(C38 H51 N6 O6 S2 1+) FORMUL 11 PO4 2(O4 P 3-) FORMUL 13 HOH *149(H2 O) LINK O3' G B 26 P PO4 B 105 1555 1555 1.56 LINK O6 G A 8 K K A 101 1555 1555 2.70 LINK O6 G A 8 K K A 102 1555 1555 2.91 LINK O6 G A 9 K K A 102 1555 1555 2.85 LINK O6 G A 9 K K A 103 1555 1555 2.82 LINK O6 G A 10 K K A 103 1555 1555 2.70 LINK O6 G A 13 K K A 101 1555 1555 2.86 LINK O6 G A 13 K K A 102 1555 1555 2.77 LINK O6 G A 14 K K A 102 1555 1555 2.71 LINK O6 G A 14 K K A 103 1555 1555 2.80 LINK O6 G A 16 K K A 103 1555 1555 2.70 LINK O6 G A 18 K K A 101 1555 1555 2.73 LINK O6 G A 18 K K A 102 1555 1555 2.95 LINK O6 G A 19 K K A 102 1555 1555 2.79 LINK O6 G A 19 K K A 103 1555 1555 3.04 LINK O6 G A 21 K K A 103 1555 1555 2.61 LINK O6 G A 23 K K A 101 1555 1555 2.91 LINK O6 G A 23 K K A 102 1555 1555 2.84 LINK O6 G A 24 K K A 102 1555 1555 2.64 LINK O6 G A 24 K K A 103 1555 1555 2.93 LINK O6 G A 26 K K A 103 1555 1555 2.76 LINK K K A 101 O6 G B 8 1555 1555 2.67 LINK K K A 101 O6 G B 13 1555 1555 2.81 LINK K K A 101 O6 G B 18 1555 1555 2.70 LINK K K A 101 O6 G B 23 1555 1555 2.88 LINK O6 G B 8 K K B 101 1555 1555 2.99 LINK O6 G B 9 K K B 101 1555 1555 2.82 LINK O6 G B 9 K K B 102 1555 1555 2.74 LINK O6 G B 10 K K B 102 1555 1555 2.69 LINK O6 G B 13 K K B 101 1555 1555 2.85 LINK O6 G B 14 K K B 101 1555 1555 2.67 LINK O6 G B 14 K K B 102 1555 1555 2.79 LINK O6 G B 16 K K B 102 1555 1555 2.80 LINK O6 G B 18 K K B 101 1555 1555 2.93 LINK O6 G B 19 K K B 101 1555 1555 2.82 LINK O6 G B 19 K K B 102 1555 1555 3.04 LINK O6 G B 21 K K B 102 1555 1555 2.60 LINK O6 G B 23 K K B 101 1555 1555 2.82 LINK O6 G B 24 K K B 101 1555 1555 2.70 LINK O6 G B 24 K K B 102 1555 1555 2.90 LINK O6 G B 26 K K B 102 1555 1555 2.80 LINK K K B 103 O HOH B 245 1555 1555 2.72 SITE 1 AC1 10 G A 8 G A 13 G A 18 G A 23 SITE 2 AC1 10 K A 102 G B 8 G B 13 G B 18 SITE 3 AC1 10 G B 23 K B 101 SITE 1 AC2 10 G A 8 G A 9 G A 13 G A 14 SITE 2 AC2 10 G A 18 G A 19 G A 23 G A 24 SITE 3 AC2 10 K A 101 K A 103 SITE 1 AC3 9 G A 9 G A 10 G A 14 G A 16 SITE 2 AC3 9 G A 19 G A 21 G A 24 G A 26 SITE 3 AC3 9 K A 102 SITE 1 AC4 18 G A 10 C A 12 U A 15 G A 16 SITE 2 AC4 18 A A 20 G A 21 A A 25 G A 26 SITE 3 AC4 18 HOH A 201 HOH A 204 HOH A 207 HOH A 209 SITE 4 AC4 18 HOH A 231 HOH A 253 A B 11 74G B 104 SITE 5 AC4 18 HOH B 224 HOH B 242 SITE 1 AC5 10 K A 101 G B 8 G B 9 G B 13 SITE 2 AC5 10 G B 14 G B 18 G B 19 G B 23 SITE 3 AC5 10 G B 24 K B 102 SITE 1 AC6 9 G B 9 G B 10 G B 14 G B 16 SITE 2 AC6 9 G B 19 G B 21 G B 24 G B 26 SITE 3 AC6 9 K B 101 SITE 1 AC7 1 HOH B 245 SITE 1 AC8 15 A A 11 74G A 104 G B 10 C B 12 SITE 2 AC8 15 U B 15 G B 16 A B 20 G B 21 SITE 3 AC8 15 A B 25 G B 26 HOH B 207 HOH B 217 SITE 4 AC8 15 HOH B 226 HOH B 235 HOH B 240 SITE 1 AC9 1 A A 25 SITE 1 AD1 8 G B 8 G B 9 G B 10 G B 21 SITE 2 AD1 8 G B 24 A B 25 K B 102 74G B 104 CRYST1 63.199 63.199 138.413 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007225 0.00000