HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-MAR-17 5V3Y TITLE CRYSTAL STRUCTURE OF MTB PKS13 THIOESTERASE DOMAIN IN COMPLEX WITH TITLE 2 INHIBITOR TAM16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13 (TERMINATION POLYKETIDE COMPND 3 SYNTHASE); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 113-395); COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS, ERS027654_02263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOESTERASE DOMAIN, TAM16 COMPLEX, PKS13, MYCOBACTERIUM, POLYKETIDE KEYWDS 2 SYNTHASE, MYCOLIC ACID CONDENSATION, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, ALPHA/BETA HYDROLASE, THIOESTERASE-TRANSFERASE KEYWDS 4 INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 4 04-OCT-23 5V3Y 1 REMARK REVDAT 3 26-JUL-17 5V3Y 1 JRNL REVDAT 2 19-JUL-17 5V3Y 1 JRNL REVDAT 1 05-JUL-17 5V3Y 0 JRNL AUTH A.AGGARWAL,M.K.PARAI,N.SHETTY,D.WALLIS,L.WOOLHISER, JRNL AUTH 2 C.HASTINGS,N.K.DUTTA,S.GALAVIZ,R.C.DHAKAL,R.SHRESTHA, JRNL AUTH 3 S.WAKABAYASHI,C.WALPOLE,D.MATTHEWS,D.FLOYD,P.SCULLION, JRNL AUTH 4 J.RILEY,O.EPEMOLU,S.NORVAL,T.SNAVELY,G.T.ROBERTSON, JRNL AUTH 5 E.J.RUBIN,T.R.IOERGER,F.A.SIRGEL,R.VAN DER MERWE, JRNL AUTH 6 P.D.VAN HELDEN,P.KELLER,E.C.BOTTGER,P.C.KARAKOUSIS, JRNL AUTH 7 A.J.LENAERTS,J.C.SACCHETTINI JRNL TITL DEVELOPMENT OF A NOVEL LEAD THAT TARGETS M. TUBERCULOSIS JRNL TITL 2 POLYKETIDE SYNTHASE 13. JRNL REF CELL V. 170 249 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28669536 JRNL DOI 10.1016/J.CELL.2017.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 36725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5891 - 4.6522 1.00 3078 149 0.1879 0.2381 REMARK 3 2 4.6522 - 3.6939 0.93 2622 146 0.1626 0.1805 REMARK 3 3 3.6939 - 3.2274 0.87 2486 126 0.1783 0.2321 REMARK 3 4 3.2274 - 2.9325 1.00 2872 171 0.1872 0.2496 REMARK 3 5 2.9325 - 2.7224 1.00 2859 138 0.1967 0.2586 REMARK 3 6 2.7224 - 2.5619 1.00 2862 164 0.1874 0.2195 REMARK 3 7 2.5619 - 2.4336 1.00 2863 144 0.1892 0.2164 REMARK 3 8 2.4336 - 2.3277 1.00 2851 152 0.2008 0.2294 REMARK 3 9 2.3277 - 2.2381 0.68 1917 97 0.2713 0.2790 REMARK 3 10 2.2381 - 2.1609 0.72 2015 114 0.2377 0.3238 REMARK 3 11 2.1609 - 2.0934 1.00 2819 163 0.2397 0.3041 REMARK 3 12 2.0934 - 2.0335 0.99 2783 151 0.3185 0.3985 REMARK 3 13 2.0335 - 1.9800 1.00 2837 146 0.2502 0.3181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4306 REMARK 3 ANGLE : 1.085 5863 REMARK 3 CHIRALITY : 0.071 626 REMARK 3 PLANARITY : 0.006 776 REMARK 3 DIHEDRAL : 12.499 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1453 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3241 30.6406 23.4371 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1574 REMARK 3 T33: 0.1249 T12: 0.0090 REMARK 3 T13: 0.0013 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.0638 L22: 2.4809 REMARK 3 L33: 3.3248 L12: 0.1187 REMARK 3 L13: 0.3172 L23: -0.3812 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.3347 S13: -0.0851 REMARK 3 S21: 0.2461 S22: 0.0467 S23: 0.1146 REMARK 3 S31: 0.1597 S32: -0.1092 S33: -0.0407 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1572 THROUGH 1590 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1132 25.2331 2.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.2861 REMARK 3 T33: 0.4426 T12: -0.0064 REMARK 3 T13: -0.0587 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 7.9088 L22: 4.4446 REMARK 3 L33: 8.9586 L12: -1.7812 REMARK 3 L13: -3.6882 L23: 3.4159 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.1557 S13: -0.0344 REMARK 3 S21: 0.1689 S22: 0.3613 S23: -0.6438 REMARK 3 S31: 0.0297 S32: 0.5438 S33: -0.3417 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1591 THROUGH 1626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0399 18.0357 9.0886 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.4370 REMARK 3 T33: 0.4084 T12: -0.1773 REMARK 3 T13: 0.0098 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 7.4690 L22: 2.7249 REMARK 3 L33: 4.0243 L12: -1.9900 REMARK 3 L13: 1.2045 L23: 0.3704 REMARK 3 S TENSOR REMARK 3 S11: 0.2174 S12: -0.9148 S13: -0.4495 REMARK 3 S21: -0.8070 S22: -0.0851 S23: 0.2594 REMARK 3 S31: 0.2584 S32: -0.3868 S33: -0.0595 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1627 THROUGH 1689 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7490 34.2323 11.9028 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.2067 REMARK 3 T33: 0.1509 T12: 0.0334 REMARK 3 T13: 0.0071 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 4.0182 L22: 4.6204 REMARK 3 L33: 3.6206 L12: 1.2681 REMARK 3 L13: 0.9281 L23: 0.2571 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.1379 S13: 0.0439 REMARK 3 S21: -0.1694 S22: -0.0343 S23: 0.2452 REMARK 3 S31: -0.0081 S32: -0.3341 S33: 0.0536 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1690 THROUGH 1727 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4792 38.2788 13.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.1488 REMARK 3 T33: 0.2195 T12: -0.0123 REMARK 3 T13: 0.0437 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 5.5903 L22: 3.9288 REMARK 3 L33: 5.1521 L12: 0.3408 REMARK 3 L13: 1.5722 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.1122 S13: 0.3396 REMARK 3 S21: 0.1406 S22: -0.0464 S23: -0.2325 REMARK 3 S31: -0.1058 S32: 0.4390 S33: -0.0705 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1451 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1152 66.3877 4.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1771 REMARK 3 T33: 0.4070 T12: -0.0090 REMARK 3 T13: -0.0101 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.5288 L22: 3.8461 REMARK 3 L33: 3.1953 L12: -0.3662 REMARK 3 L13: -0.1518 L23: 0.0341 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: 0.0336 S13: 0.3573 REMARK 3 S21: 0.0101 S22: 0.1508 S23: -0.8044 REMARK 3 S31: -0.1593 S32: 0.4182 S33: -0.0225 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1572 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9388 62.3659 -2.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.2219 REMARK 3 T33: 0.2478 T12: -0.0640 REMARK 3 T13: 0.0239 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.0628 L22: 3.2925 REMARK 3 L33: 3.3086 L12: -0.6929 REMARK 3 L13: 0.5413 L23: -2.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.0717 S13: -0.0462 REMARK 3 S21: -0.1655 S22: 0.2233 S23: 0.1625 REMARK 3 S31: 0.2979 S32: -0.2304 S33: -0.1635 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2128 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5V3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0-1.8 M AMMONIUM REMARK 280 SULFATE, 2%-5% V/V PPG P400, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.81350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.38100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.81350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.38100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 GLN A 1451 REMARK 465 ILE A 1452 REMARK 465 SER A 1619 REMARK 465 GLN A 1620 REMARK 465 SER A 1621 REMARK 465 GLY A 1622 REMARK 465 VAL A 1623 REMARK 465 GLN A 1624 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 GLU B 1464 REMARK 465 ALA B 1465 REMARK 465 GLY B 1466 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1453 CG OD1 OD2 REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 ASN A1591 CG OD1 ND2 REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLU A1604 CG CD OE1 OE2 REMARK 470 ARG A1612 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1614 CG1 CG2 REMARK 470 LEU A1615 CG CD1 CD2 REMARK 470 ASP A1616 CG OD1 OD2 REMARK 470 VAL A1618 CG1 CG2 REMARK 470 MET A1669 CG SD CE REMARK 470 THR A1727 OG1 CG2 REMARK 470 GLN B1451 CG CD OE1 NE2 REMARK 470 GLU B1508 CG CD OE1 OE2 REMARK 470 GLU B1566 CG CD OE1 OE2 REMARK 470 GLU B1567 CG CD OE1 OE2 REMARK 470 LYS B1572 CG CD CE NZ REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 LYS B1577 CG CD CE NZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 THR B1589 OG1 CG2 REMARK 470 PHE B1590 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B1591 CG OD1 ND2 REMARK 470 VAL B1592 CG1 CG2 REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 GLN B1624 CG CD OE1 NE2 REMARK 470 GLN B1647 CG CD OE1 NE2 REMARK 470 MET B1669 CG SD CE REMARK 470 ASP B1725 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 1453 O HOH B 1901 1.75 REMARK 500 OE1 GLU B 1713 O HOH B 1902 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1717 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1533 -135.17 61.52 REMARK 500 GLN A1570 71.61 -102.74 REMARK 500 SER B1533 -136.61 61.55 REMARK 500 GLN B1570 77.74 -117.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V8 A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V8 B 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3W RELATED DB: PDB REMARK 900 RELATED ID: 5V3X RELATED DB: PDB REMARK 900 RELATED ID: 5V3Z RELATED DB: PDB REMARK 900 RELATED ID: 5V40 RELATED DB: PDB REMARK 900 RELATED ID: 5V41 RELATED DB: PDB REMARK 900 RELATED ID: 5V42 RELATED DB: PDB DBREF1 5V3Y A 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3Y A A0A0T9CRX1 113 395 DBREF1 5V3Y B 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3Y B A0A0T9CRX1 113 395 SEQADV 5V3Y SER A 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Y ASN A 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Y ALA A 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Y SER B 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Y ASN B 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Y ALA B 1450 UNP A0A0T9CRX EXPRESSION TAG SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET 5V8 A1801 28 HET 5V8 B1801 28 HET SO4 B1802 5 HETNAM 5V8 2-(4-HYDROXYPHENYL)-~{N}-METHYL-5-OXIDANYL-4- HETNAM 2 5V8 (PIPERIDIN-1-YLMETHYL)-1-BENZOFURAN-3-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 5V8 2(C22 H24 N2 O4) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *309(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 ASN A 1591 1 21 HELIX 6 AA6 PRO A 1598 GLU A 1604 1 7 HELIX 7 AA7 ASP A 1606 VAL A 1618 1 13 HELIX 8 AA8 PRO A 1626 THR A 1645 1 20 HELIX 9 AA9 HIS A 1664 GLU A 1671 1 8 HELIX 10 AB1 PRO A 1672 VAL A 1676 5 5 HELIX 11 AB2 GLU A 1698 ALA A 1702 5 5 HELIX 12 AB3 PRO A 1706 THR A 1727 1 22 HELIX 13 AB4 SER B 1480 VAL B 1483 5 4 HELIX 14 AB5 TYR B 1484 ARG B 1490 1 7 HELIX 15 AB6 SER B 1506 GLY B 1523 1 18 HELIX 16 AB7 SER B 1533 LEU B 1549 1 17 HELIX 17 AB8 THR B 1571 PHE B 1590 1 20 HELIX 18 AB9 PRO B 1598 GLU B 1603 1 6 HELIX 19 AC1 ASP B 1606 SER B 1621 1 16 HELIX 20 AC2 PRO B 1626 THR B 1645 1 20 HELIX 21 AC3 HIS B 1664 GLU B 1671 1 8 HELIX 22 AC4 PRO B 1672 VAL B 1676 5 5 HELIX 23 AC5 GLU B 1698 ALA B 1702 5 5 HELIX 24 AC6 PRO B 1706 ASP B 1725 1 20 SHEET 1 AA1 7 VAL A1456 ARG A1460 0 SHEET 2 AA1 7 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 3 AA1 7 VAL A1471 PHE A1474 1 N VAL A1473 O TYR A1498 SHEET 4 AA1 7 TYR A1527 TRP A1532 1 O VAL A1528 N PHE A1472 SHEET 5 AA1 7 VAL A1553 ILE A1559 1 O ILE A1559 N GLY A1531 SHEET 6 AA1 7 VAL A1655 MET A1659 1 O THR A1656 N VAL A1556 SHEET 7 AA1 7 LEU A1690 PRO A1694 1 O GLU A1691 N LEU A1657 SHEET 1 AA2 8 ILE B1452 ASP B1453 0 SHEET 2 AA2 8 VAL B1456 ARG B1460 -1 O VAL B1456 N ASP B1453 SHEET 3 AA2 8 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 4 AA2 8 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 5 AA2 8 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 6 AA2 8 VAL B1553 ILE B1559 1 O ILE B1559 N GLY B1531 SHEET 7 AA2 8 VAL B1655 MET B1659 1 O THR B1656 N VAL B1556 SHEET 8 AA2 8 LEU B1690 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 -0.78 CISPEP 2 GLU A 1705 PRO A 1706 0 1.55 CISPEP 3 GLY B 1525 PRO B 1526 0 -0.07 CISPEP 4 GLU B 1705 PRO B 1706 0 1.90 SITE 1 AC1 11 GLN A1633 SER A1636 TYR A1637 ASN A1640 SITE 2 AC1 11 ASP A1644 ASP A1666 ALA A1667 PHE A1670 SITE 3 AC1 11 GLU A1671 TYR A1674 HOH A1988 SITE 1 AC2 13 TYR B1582 GLN B1633 SER B1636 TYR B1637 SITE 2 AC2 13 ASN B1640 ILE B1643 ASP B1644 ASP B1666 SITE 3 AC2 13 ALA B1667 PHE B1670 GLU B1671 TYR B1674 SITE 4 AC2 13 HOH B1922 SITE 1 AC3 5 SER B1506 ILE B1507 GLU B1508 GLN B1647 SITE 2 AC3 5 HOH B1942 CRYST1 89.627 108.762 56.735 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017626 0.00000