HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-MAR-17 5V4F TITLE CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION OF THE CONSERVED TITLE 2 RID PROTEIN FAMILY YYFB FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSLATIONAL INHIBITOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: TDCF4, Y3550, YP_2945, YPO0628; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG73 KEYWDS ALPHA-BETA FOLD, ENAMINE/IMINE DEMAINASE (RID), STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,M.ENDRES,A.KRISHNAN,G.BABNIGG,O.SCHNEEWIND, AUTHOR 2 W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 24-JAN-18 5V4F 1 AUTHOR JRNL REVDAT 2 20-SEP-17 5V4F 1 REMARK REVDAT 1 05-APR-17 5V4F 0 JRNL AUTH Y.KIM,G.CHHOR,M.ENDRES,A.KRISHNAN,G.BABNIGG,O.SCHNEEWIND, JRNL AUTH 2 W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION OF THE JRNL TITL 2 CONSERVED RID PROTEIN FAMILY YYFB FROM YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2411) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 14380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8620 - 5.1284 0.97 2805 153 0.1639 0.1967 REMARK 3 2 5.1284 - 4.0718 1.00 2796 117 0.1246 0.1455 REMARK 3 3 4.0718 - 3.5574 1.00 2725 175 0.1397 0.2169 REMARK 3 4 3.5574 - 3.2323 0.99 2723 134 0.1806 0.2204 REMARK 3 5 3.2323 - 3.0007 0.94 2616 136 0.2125 0.2750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2128 REMARK 3 ANGLE : 1.094 2888 REMARK 3 CHIRALITY : 0.060 330 REMARK 3 PLANARITY : 0.008 378 REMARK 3 DIHEDRAL : 17.585 1260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.0709 33.9492 77.6229 REMARK 3 T TENSOR REMARK 3 T11: 0.4682 T22: 0.4582 REMARK 3 T33: 0.5664 T12: 0.0581 REMARK 3 T13: -0.0676 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 5.7313 L22: 6.7229 REMARK 3 L33: 9.3333 L12: 3.0775 REMARK 3 L13: -2.8905 L23: -3.6653 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.3416 S13: 0.8455 REMARK 3 S21: 0.0612 S22: 0.2378 S23: 0.6429 REMARK 3 S31: -0.5638 S32: -0.6484 S33: -0.2642 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.9256 15.5161 74.5585 REMARK 3 T TENSOR REMARK 3 T11: 0.3787 T22: 0.3693 REMARK 3 T33: 0.4177 T12: 0.0005 REMARK 3 T13: -0.0276 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.8480 L22: 2.1226 REMARK 3 L33: 2.1082 L12: -0.2973 REMARK 3 L13: 0.2861 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.1600 S13: -0.0070 REMARK 3 S21: -0.0880 S22: 0.0230 S23: 0.0849 REMARK 3 S31: 0.1009 S32: -0.0121 S33: 0.0173 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.4560 -2.1702 57.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.5435 T22: 0.4032 REMARK 3 T33: 0.4677 T12: 0.0059 REMARK 3 T13: -0.0761 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 9.9525 L22: 6.8387 REMARK 3 L33: 5.5635 L12: -3.3362 REMARK 3 L13: -2.3119 L23: 3.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.2246 S12: -0.4000 S13: -0.9671 REMARK 3 S21: 0.5541 S22: 0.0371 S23: -0.0556 REMARK 3 S31: 0.7911 S32: 0.3941 S33: 0.1474 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.7200 16.6373 60.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.4348 T22: 0.3844 REMARK 3 T33: 0.3880 T12: 0.0164 REMARK 3 T13: -0.0224 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.8503 L22: 2.6330 REMARK 3 L33: 1.6091 L12: -0.0160 REMARK 3 L13: 0.4794 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.0478 S13: 0.1497 REMARK 3 S21: -0.0452 S22: 0.0375 S23: -0.1358 REMARK 3 S31: 0.0330 S32: 0.0923 S33: 0.0354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14594 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72500 REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 30 5(W/V) PEG3000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.60250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.60250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.60250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.60250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.60250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.60250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 64.60250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 64.60250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 64.60250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 64.60250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 64.60250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 64.60250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 64.60250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 64.60250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 64.60250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 64.60250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 64.60250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 64.60250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 193.80750 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 129.20500 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 64.60250 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 129.20500 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -64.60250 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 193.80750 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 129.20500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -64.60250 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 64.60250 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 64.60250 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 64.60250 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 129.20500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 134 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLY B 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 122 O HOH A 301 2.12 REMARK 500 OE2 GLU B 122 O HOH B 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 57.34 38.01 REMARK 500 ASN B 85 57.63 36.72 REMARK 500 LEU B 118 -166.35 -109.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP00213 RELATED DB: TARGETTRACK DBREF 5V4F A 1 134 UNP Q7CGF8 Q7CGF8_YERPE 1 134 DBREF 5V4F B 1 134 UNP Q7CGF8 Q7CGF8_YERPE 1 134 SEQADV 5V4F SER A -2 UNP Q7CGF8 EXPRESSION TAG SEQADV 5V4F ASN A -1 UNP Q7CGF8 EXPRESSION TAG SEQADV 5V4F ALA A 0 UNP Q7CGF8 EXPRESSION TAG SEQADV 5V4F SER B -2 UNP Q7CGF8 EXPRESSION TAG SEQADV 5V4F ASN B -1 UNP Q7CGF8 EXPRESSION TAG SEQADV 5V4F ALA B 0 UNP Q7CGF8 EXPRESSION TAG SEQRES 1 A 137 SER ASN ALA MSE ASN ARG ARG VAL ILE ASN PRO GLU THR SEQRES 2 A 137 MSE TYR PRO SER VAL PRO PHE GLY PHE SER HIS ALA VAL SEQRES 3 A 137 GLU GLN LEU SER GLY ARG THR LEU HIS ILE ALA GLY GLN SEQRES 4 A 137 VAL ALA TRP ASN ALA ASN GLY GLU LEU VAL GLY GLY GLN SEQRES 5 A 137 ASP LEU LEU ALA GLN THR GLN GLN VAL LEU ALA ASN LEU SEQRES 6 A 137 LYS GLU VAL LEU ARG TYR ALA GLY ALA THR PRO ALA ASP SEQRES 7 A 137 VAL VAL ARG LEU ARG THR TYR VAL VAL ASN HIS SER PRO SEQRES 8 A 137 ALA ASN LEU ALA ALA ILE CYS ALA GLN ILE GLY ALA PHE SEQRES 9 A 137 TYR GLU GLY ALA ASP PRO ALA ALA ASN SER PHE ILE GLY SEQRES 10 A 137 VAL GLN ALA LEU ALA LEU PRO GLU LEU LEU ILE GLU ILE SEQRES 11 A 137 GLU ALA THR ALA CYS LEU GLY SEQRES 1 B 137 SER ASN ALA MSE ASN ARG ARG VAL ILE ASN PRO GLU THR SEQRES 2 B 137 MSE TYR PRO SER VAL PRO PHE GLY PHE SER HIS ALA VAL SEQRES 3 B 137 GLU GLN LEU SER GLY ARG THR LEU HIS ILE ALA GLY GLN SEQRES 4 B 137 VAL ALA TRP ASN ALA ASN GLY GLU LEU VAL GLY GLY GLN SEQRES 5 B 137 ASP LEU LEU ALA GLN THR GLN GLN VAL LEU ALA ASN LEU SEQRES 6 B 137 LYS GLU VAL LEU ARG TYR ALA GLY ALA THR PRO ALA ASP SEQRES 7 B 137 VAL VAL ARG LEU ARG THR TYR VAL VAL ASN HIS SER PRO SEQRES 8 B 137 ALA ASN LEU ALA ALA ILE CYS ALA GLN ILE GLY ALA PHE SEQRES 9 B 137 TYR GLU GLY ALA ASP PRO ALA ALA ASN SER PHE ILE GLY SEQRES 10 B 137 VAL GLN ALA LEU ALA LEU PRO GLU LEU LEU ILE GLU ILE SEQRES 11 B 137 GLU ALA THR ALA CYS LEU GLY MODRES 5V4F MSE A 1 MET MODIFIED RESIDUE MODRES 5V4F MSE A 11 MET MODIFIED RESIDUE MODRES 5V4F MSE B 1 MET MODIFIED RESIDUE MODRES 5V4F MSE B 11 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 11 8 HET MSE B 1 8 HET MSE B 11 8 HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL B 201 6 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 12(C3 H8 O3) FORMUL 15 HOH *43(H2 O) HELIX 1 AA1 SER A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 50 GLY A 70 1 21 HELIX 3 AA3 THR A 72 ALA A 74 5 3 HELIX 4 AA4 SER A 87 ALA A 89 5 3 HELIX 5 AA5 ASN A 90 TYR A 102 1 13 HELIX 6 AA6 SER B 14 GLY B 18 5 5 HELIX 7 AA7 ASP B 50 GLY B 70 1 21 HELIX 8 AA8 THR B 72 ALA B 74 5 3 HELIX 9 AA9 SER B 87 ALA B 89 5 3 HELIX 10 AB1 ASN B 90 TYR B 102 1 13 SHEET 1 AA1 2 ARG A 3 ILE A 6 0 SHEET 2 AA1 2 ALA A 22 GLN A 25 -1 O GLU A 24 N ARG A 4 SHEET 1 AA2 4 THR A 30 VAL A 37 0 SHEET 2 AA2 4 ILE A 125 CYS A 132 -1 O ALA A 131 N LEU A 31 SHEET 3 AA2 4 VAL A 76 VAL A 84 -1 N VAL A 77 O THR A 130 SHEET 4 AA2 4 PHE A 112 VAL A 115 1 O ILE A 113 N THR A 81 SHEET 1 AA3 2 ARG B 3 ILE B 6 0 SHEET 2 AA3 2 ALA B 22 GLN B 25 -1 O GLU B 24 N ARG B 4 SHEET 1 AA4 4 ARG B 29 GLN B 36 0 SHEET 2 AA4 4 ILE B 125 LEU B 133 -1 O ALA B 131 N LEU B 31 SHEET 3 AA4 4 VAL B 76 VAL B 84 -1 N VAL B 77 O THR B 130 SHEET 4 AA4 4 PHE B 112 VAL B 115 1 O ILE B 113 N THR B 81 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C THR A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N TYR A 12 1555 1555 1.32 LINK C MSE B 1 N ASN B 2 1555 1555 1.33 LINK C THR B 10 N MSE B 11 1555 1555 1.32 LINK C MSE B 11 N TYR B 12 1555 1555 1.33 SITE 1 AC1 2 PRO A 8 PRO A 13 SITE 1 AC2 1 ASN A 85 SITE 1 AC3 3 TRP A 39 GLY A 43 GOL A 204 SITE 1 AC4 1 GOL A 203 SITE 1 AC5 6 LEU A 51 VAL A 84 ASN A 85 HIS A 86 SITE 2 AC5 6 SER A 87 ASN A 90 SITE 1 AC6 6 PHE A 17 PHE A 19 GLY A 35 ASN A 110 SITE 2 AC6 6 SER A 111 GLU A 126 SITE 1 AC7 4 PRO B 8 GLU B 9 MSE B 11 PRO B 13 SITE 1 AC8 5 PHE B 19 GLY B 35 ASN B 110 SER B 111 SITE 2 AC8 5 GLU B 126 SITE 1 AC9 2 ARG B 67 TYR B 68 SITE 1 AD1 1 ASN B 85 SITE 1 AD2 1 PHE B 17 SITE 1 AD3 6 LEU B 51 VAL B 84 ASN B 85 HIS B 86 SITE 2 AD3 6 SER B 87 ASN B 90 CRYST1 129.205 129.205 129.205 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007740 0.00000 HETATM 1 N MSE A 1 91.816 36.013 81.253 1.00113.96 N ANISOU 1 N MSE A 1 11012 15096 17190 2958 1189 1864 N HETATM 2 CA MSE A 1 91.031 35.656 82.433 1.00119.67 C ANISOU 2 CA MSE A 1 11558 15937 17972 3045 1621 1751 C HETATM 3 C MSE A 1 91.884 35.162 83.587 1.00116.79 C ANISOU 3 C MSE A 1 11851 15279 17247 2732 1790 1123 C HETATM 4 O MSE A 1 92.268 35.924 84.480 1.00117.90 O ANISOU 4 O MSE A 1 12470 14921 17406 2947 2253 795 O HETATM 5 CB MSE A 1 90.009 34.573 82.098 1.00123.06 C ANISOU 5 CB MSE A 1 11305 17097 18354 2743 1324 2099 C HETATM 6 CG MSE A 1 88.901 34.461 83.127 1.00132.28 C ANISOU 6 CG MSE A 1 12066 18471 19722 2966 1833 2191 C HETATM 7 SE MSE A 1 87.313 35.547 82.685 0.55149.52 SE ANISOU 7 SE MSE A 1 13493 20885 22432 3578 2071 2903 SE HETATM 8 CE MSE A 1 87.765 37.198 83.630 1.00151.55 C ANISOU 8 CE MSE A 1 14483 20162 22937 4266 2882 2534 C