HEADER OXIDOREDUCTASE 10-MAR-17 5V4V TITLE SACCHAROMYCES CEREVISIAE OLD YELLOW ENZYME 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OLD YELLOW ENZYME 3; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: OYE3, YPL171C, P2291; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OYE, FLAVOPROTEIN, REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.STEWART REVDAT 3 06-MAR-24 5V4V 1 REMARK REVDAT 2 27-NOV-19 5V4V 1 REMARK REVDAT 1 14-MAR-18 5V4V 0 JRNL AUTH J.D.STEWART JRNL TITL SACCHAROMYCES CEREVISIAE OLD YELLOW ENZYME 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 87077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8878 - 5.5809 0.99 2973 161 0.1609 0.1743 REMARK 3 2 5.5809 - 4.4318 1.00 2860 161 0.1260 0.1585 REMARK 3 3 4.4318 - 3.8721 1.00 2828 135 0.1196 0.1524 REMARK 3 4 3.8721 - 3.5184 1.00 2842 146 0.1325 0.1615 REMARK 3 5 3.5184 - 3.2663 1.00 2794 126 0.1353 0.1888 REMARK 3 6 3.2663 - 3.0738 1.00 2776 148 0.1385 0.1796 REMARK 3 7 3.0738 - 2.9199 1.00 2800 141 0.1322 0.1745 REMARK 3 8 2.9199 - 2.7929 1.00 2800 122 0.1306 0.1807 REMARK 3 9 2.7929 - 2.6854 1.00 2760 154 0.1284 0.1641 REMARK 3 10 2.6854 - 2.5927 1.00 2756 150 0.1329 0.1874 REMARK 3 11 2.5927 - 2.5117 1.00 2767 152 0.1374 0.1919 REMARK 3 12 2.5117 - 2.4399 1.00 2741 135 0.1351 0.1838 REMARK 3 13 2.4399 - 2.3757 1.00 2777 145 0.1390 0.1953 REMARK 3 14 2.3757 - 2.3177 1.00 2749 142 0.1426 0.2151 REMARK 3 15 2.3177 - 2.2650 1.00 2719 136 0.1397 0.1791 REMARK 3 16 2.2650 - 2.2168 1.00 2783 151 0.1406 0.1742 REMARK 3 17 2.2168 - 2.1725 1.00 2721 142 0.1459 0.1785 REMARK 3 18 2.1725 - 2.1315 1.00 2750 149 0.1502 0.1857 REMARK 3 19 2.1315 - 2.0934 1.00 2715 151 0.1549 0.1998 REMARK 3 20 2.0934 - 2.0580 1.00 2747 168 0.1728 0.2160 REMARK 3 21 2.0580 - 2.0248 1.00 2726 134 0.1779 0.2104 REMARK 3 22 2.0248 - 1.9936 1.00 2704 159 0.1801 0.2524 REMARK 3 23 1.9936 - 1.9643 1.00 2724 147 0.1860 0.2325 REMARK 3 24 1.9643 - 1.9366 0.99 2712 153 0.1900 0.2132 REMARK 3 25 1.9366 - 1.9105 1.00 2731 144 0.1963 0.2381 REMARK 3 26 1.9105 - 1.8856 1.00 2760 134 0.1893 0.2426 REMARK 3 27 1.8856 - 1.8621 1.00 2698 170 0.2125 0.2613 REMARK 3 28 1.8621 - 1.8396 1.00 2747 129 0.2119 0.2754 REMARK 3 29 1.8396 - 1.8182 1.00 2742 146 0.2258 0.2628 REMARK 3 30 1.8182 - 1.7978 0.93 2494 150 0.2557 0.2727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6670 REMARK 3 ANGLE : 1.245 9088 REMARK 3 CHIRALITY : 0.052 943 REMARK 3 PLANARITY : 0.006 1193 REMARK 3 DIHEDRAL : 13.930 2438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 38.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES MONOHYDRATE, 22% V/V PEG REMARK 280 400, 25 MM TRIS, 25 MM NACL, PH 8.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.60700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.53550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.88100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.53550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.60700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.88100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 398 REMARK 465 ASN A 399 REMARK 465 MET B 0 REMARK 465 LYS B 398 REMARK 465 ASN B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 612 O HOH A 846 2.03 REMARK 500 O HOH A 509 O HOH A 636 2.11 REMARK 500 OD2 ASP B 13 O HOH B 501 2.12 REMARK 500 OE1 GLU B 335 O HOH B 502 2.13 REMARK 500 O HOH B 518 O HOH B 531 2.15 REMARK 500 O HOH A 800 O HOH A 826 2.16 REMARK 500 O HOH A 759 O HOH A 787 2.16 REMARK 500 O HOH B 501 O HOH B 838 2.17 REMARK 500 O HOH A 784 O HOH A 901 2.17 REMARK 500 OE2 GLU A 212 O HOH A 501 2.18 REMARK 500 O HOH A 643 O HOH A 920 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 570 O HOH B 868 4545 2.10 REMARK 500 O HOH A 875 O HOH B 913 3545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 371 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 150.65 -43.44 REMARK 500 ILE A 88 29.94 -143.83 REMARK 500 ILE A 315 -60.01 -103.49 REMARK 500 ASP A 355 40.47 -99.36 REMARK 500 TYR A 382 -63.81 -130.00 REMARK 500 ASP B 13 47.82 -104.06 REMARK 500 ILE B 88 29.84 -141.69 REMARK 500 ASP B 139 2.25 -68.98 REMARK 500 ILE B 315 -60.29 -105.76 REMARK 500 ASP B 355 39.55 -96.52 REMARK 500 TYR B 382 -63.14 -130.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 978 DISTANCE = 6.74 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V4P RELATED DB: PDB DBREF 5V4V A 0 399 UNP P41816 OYE3_YEAST 1 400 DBREF 5V4V B 0 399 UNP P41816 OYE3_YEAST 1 400 SEQRES 1 A 400 MET PRO PHE VAL LYS GLY PHE GLU PRO ILE SER LEU ARG SEQRES 2 A 400 ASP THR ASN LEU PHE GLU PRO ILE LYS ILE GLY ASN THR SEQRES 3 A 400 GLN LEU ALA HIS ARG ALA VAL MET PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA THR HIS PRO GLY ASN ILE PRO ASN LYS GLU SEQRES 5 A 400 TRP ALA ALA VAL TYR TYR GLY GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY THR PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY ILE TRP SER SEQRES 8 A 400 ASP GLU GLN VAL ALA GLU TRP LYS ASN ILE PHE LEU ALA SEQRES 9 A 400 ILE HIS ASP CYS GLN SER PHE ALA TRP VAL GLN LEU TRP SEQRES 10 A 400 SER LEU GLY TRP ALA SER PHE PRO ASP VAL LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP CYS ALA SER ASP ARG VAL TYR SEQRES 12 A 400 MET ASN ALA THR LEU GLN GLU LYS ALA LYS ASP ALA ASN SEQRES 13 A 400 ASN LEU GLU HIS SER LEU THR LYS ASP ASP ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS ASP TYR ILE HIS ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 LYS ARG THR ASP GLU TYR GLY GLY THR ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU ILE GLU SEQRES 19 A 400 THR ILE GLY PRO GLU ARG VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY THR PHE ASN SER MET SER GLY GLY ALA GLU PRO SEQRES 21 A 400 GLY ILE ILE ALA GLN TYR SER TYR VAL LEU GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASP PRO SER LEU VAL SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR SER GLU GLY THR ASN ASP PHE SEQRES 25 A 400 ALA TYR SER ILE TRP LYS GLY PRO ILE ILE ARG ALA GLY SEQRES 26 A 400 ASN TYR ALA LEU HIS PRO GLU VAL VAL ARG GLU GLN VAL SEQRES 27 A 400 LYS ASP PRO ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL TYR ARG LEU GLU GLU GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG SER THR PHE TYR THR SEQRES 30 A 400 MET SER ALA GLU GLY TYR THR ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA VAL ASP LEU GLY TRP ASN LYS ASN SEQRES 1 B 400 MET PRO PHE VAL LYS GLY PHE GLU PRO ILE SER LEU ARG SEQRES 2 B 400 ASP THR ASN LEU PHE GLU PRO ILE LYS ILE GLY ASN THR SEQRES 3 B 400 GLN LEU ALA HIS ARG ALA VAL MET PRO PRO LEU THR ARG SEQRES 4 B 400 MET ARG ALA THR HIS PRO GLY ASN ILE PRO ASN LYS GLU SEQRES 5 B 400 TRP ALA ALA VAL TYR TYR GLY GLN ARG ALA GLN ARG PRO SEQRES 6 B 400 GLY THR MET ILE ILE THR GLU GLY THR PHE ILE SER PRO SEQRES 7 B 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY ILE TRP SER SEQRES 8 B 400 ASP GLU GLN VAL ALA GLU TRP LYS ASN ILE PHE LEU ALA SEQRES 9 B 400 ILE HIS ASP CYS GLN SER PHE ALA TRP VAL GLN LEU TRP SEQRES 10 B 400 SER LEU GLY TRP ALA SER PHE PRO ASP VAL LEU ALA ARG SEQRES 11 B 400 ASP GLY LEU ARG TYR ASP CYS ALA SER ASP ARG VAL TYR SEQRES 12 B 400 MET ASN ALA THR LEU GLN GLU LYS ALA LYS ASP ALA ASN SEQRES 13 B 400 ASN LEU GLU HIS SER LEU THR LYS ASP ASP ILE LYS GLN SEQRES 14 B 400 TYR ILE LYS ASP TYR ILE HIS ALA ALA LYS ASN SER ILE SEQRES 15 B 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 B 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 B 400 LYS ARG THR ASP GLU TYR GLY GLY THR ILE GLU ASN ARG SEQRES 18 B 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU ILE GLU SEQRES 19 B 400 THR ILE GLY PRO GLU ARG VAL GLY LEU ARG LEU SER PRO SEQRES 20 B 400 TYR GLY THR PHE ASN SER MET SER GLY GLY ALA GLU PRO SEQRES 21 B 400 GLY ILE ILE ALA GLN TYR SER TYR VAL LEU GLY GLU LEU SEQRES 22 B 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 B 400 HIS LEU VAL GLU PRO ARG VAL THR ASP PRO SER LEU VAL SEQRES 24 B 400 GLU GLY GLU GLY GLU TYR SER GLU GLY THR ASN ASP PHE SEQRES 25 B 400 ALA TYR SER ILE TRP LYS GLY PRO ILE ILE ARG ALA GLY SEQRES 26 B 400 ASN TYR ALA LEU HIS PRO GLU VAL VAL ARG GLU GLN VAL SEQRES 27 B 400 LYS ASP PRO ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 B 400 ILE SER ASN PRO ASP LEU VAL TYR ARG LEU GLU GLU GLY SEQRES 29 B 400 LEU PRO LEU ASN LYS TYR ASP ARG SER THR PHE TYR THR SEQRES 30 B 400 MET SER ALA GLU GLY TYR THR ASP TYR PRO THR TYR GLU SEQRES 31 B 400 GLU ALA VAL ASP LEU GLY TRP ASN LYS ASN HET FMN A 401 50 HET NCA A 402 15 HET GOL A 403 14 HET FMN B 401 50 HET NCA B 402 15 HET GOL B 403 14 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NCA NICOTINAMIDE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 NCA 2(C6 H6 N2 O) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *930(H2 O) HELIX 1 AA1 THR A 14 GLU A 18 5 5 HELIX 2 AA2 TRP A 52 ALA A 61 1 10 HELIX 3 AA3 SER A 76 GLY A 80 5 5 HELIX 4 AA4 SER A 90 CYS A 107 1 18 HELIX 5 AA5 LEU A 118 SER A 122 5 5 HELIX 6 AA6 PHE A 123 ASP A 130 1 8 HELIX 7 AA7 ASN A 144 ALA A 154 1 11 HELIX 8 AA8 THR A 162 ALA A 183 1 22 HELIX 9 AA9 TYR A 196 ASP A 203 1 8 HELIX 10 AB1 THR A 216 ALA A 221 1 6 HELIX 11 AB2 ALA A 221 GLY A 236 1 16 HELIX 12 AB3 SER A 254 GLU A 258 5 5 HELIX 13 AB4 GLY A 260 ALA A 278 1 19 HELIX 14 AB5 ASN A 309 TRP A 316 1 8 HELIX 15 AB6 HIS A 329 VAL A 337 1 9 HELIX 16 AB7 GLY A 347 ASN A 353 1 7 HELIX 17 AB8 ASP A 355 GLY A 363 1 9 HELIX 18 AB9 ASP A 370 PHE A 374 5 5 HELIX 19 AC1 THR A 387 LEU A 394 1 8 HELIX 20 AC2 THR B 14 GLU B 18 5 5 HELIX 21 AC3 TRP B 52 ALA B 61 1 10 HELIX 22 AC4 SER B 76 GLY B 80 5 5 HELIX 23 AC5 SER B 90 CYS B 107 1 18 HELIX 24 AC6 LEU B 118 SER B 122 5 5 HELIX 25 AC7 PHE B 123 ASP B 130 1 8 HELIX 26 AC8 ASN B 144 ALA B 154 1 11 HELIX 27 AC9 THR B 162 ALA B 183 1 22 HELIX 28 AD1 TYR B 196 ASP B 203 1 8 HELIX 29 AD2 THR B 216 ALA B 221 1 6 HELIX 30 AD3 ALA B 221 GLY B 236 1 16 HELIX 31 AD4 SER B 254 GLU B 258 5 5 HELIX 32 AD5 GLY B 260 ALA B 278 1 19 HELIX 33 AD6 ASN B 309 TRP B 316 1 8 HELIX 34 AD7 HIS B 329 VAL B 337 1 9 HELIX 35 AD8 GLY B 347 ASN B 353 1 7 HELIX 36 AD9 ASP B 355 GLY B 363 1 9 HELIX 37 AE1 ASP B 370 PHE B 374 5 5 HELIX 38 AE2 THR B 387 LEU B 394 1 8 SHEET 1 AA1 2 ILE A 20 ILE A 22 0 SHEET 2 AA1 2 THR A 25 LEU A 27 -1 O LEU A 27 N ILE A 20 SHEET 1 AA210 THR A 73 PHE A 74 0 SHEET 2 AA210 PHE A 110 TRP A 116 1 O TRP A 116 N THR A 73 SHEET 3 AA210 GLY A 187 HIS A 191 1 O GLU A 189 N LEU A 115 SHEET 4 AA210 VAL A 240 LEU A 244 1 O GLY A 241 N ILE A 190 SHEET 5 AA210 PHE A 284 VAL A 288 1 O HIS A 286 N LEU A 242 SHEET 6 AA210 ILE A 320 ALA A 323 1 O ILE A 321 N LEU A 287 SHEET 7 AA210 THR A 342 GLY A 345 1 O GLY A 345 N ARG A 322 SHEET 8 AA210 ALA A 31 MET A 33 1 N VAL A 32 O ILE A 344 SHEET 9 AA210 MET A 67 ILE A 69 1 O ILE A 69 N MET A 33 SHEET 10 AA210 PHE A 110 TRP A 116 1 O TRP A 112 N ILE A 68 SHEET 1 AA3 2 TYR A 134 CYS A 136 0 SHEET 2 AA3 2 GLU A 158 SER A 160 1 O HIS A 159 N TYR A 134 SHEET 1 AA4 2 ILE B 20 ILE B 22 0 SHEET 2 AA4 2 THR B 25 LEU B 27 -1 O LEU B 27 N ILE B 20 SHEET 1 AA5 9 ALA B 31 MET B 33 0 SHEET 2 AA5 9 MET B 67 PHE B 74 1 O ILE B 69 N MET B 33 SHEET 3 AA5 9 PHE B 110 TRP B 116 1 O TRP B 112 N THR B 70 SHEET 4 AA5 9 GLY B 187 HIS B 191 1 O GLU B 189 N LEU B 115 SHEET 5 AA5 9 VAL B 240 LEU B 244 1 O GLY B 241 N ILE B 190 SHEET 6 AA5 9 PHE B 284 VAL B 288 1 O HIS B 286 N LEU B 242 SHEET 7 AA5 9 ILE B 320 ALA B 323 1 O ILE B 321 N LEU B 287 SHEET 8 AA5 9 THR B 342 GLY B 345 1 O GLY B 345 N ARG B 322 SHEET 9 AA5 9 ALA B 31 MET B 33 1 N VAL B 32 O ILE B 344 SHEET 1 AA6 2 TYR B 134 CYS B 136 0 SHEET 2 AA6 2 GLU B 158 SER B 160 1 O HIS B 159 N TYR B 134 CISPEP 1 HIS A 43 PRO A 44 0 4.79 CISPEP 2 HIS B 43 PRO B 44 0 -0.11 SITE 1 AC1 19 PRO A 35 LEU A 36 THR A 37 GLY A 72 SITE 2 AC1 19 GLN A 114 HIS A 191 ASN A 194 ARG A 243 SITE 3 AC1 19 GLY A 324 ASN A 325 GLY A 347 ARG A 348 SITE 4 AC1 19 PHE A 374 TYR A 375 NCA A 402 HOH A 539 SITE 5 AC1 19 HOH A 544 HOH A 642 HOH A 762 SITE 1 AC2 7 THR A 37 HIS A 191 ASN A 194 TYR A 196 SITE 2 AC2 7 PRO A 295 TYR A 375 FMN A 401 SITE 1 AC3 5 GLN A 62 TYR A 385 THR A 387 GLU A 390 SITE 2 AC3 5 HOH A 508 SITE 1 AC4 19 PRO B 35 LEU B 36 THR B 37 GLY B 72 SITE 2 AC4 19 GLN B 114 HIS B 191 ASN B 194 ARG B 243 SITE 3 AC4 19 GLY B 324 ASN B 325 GLY B 347 ARG B 348 SITE 4 AC4 19 PHE B 374 TYR B 375 NCA B 402 HOH B 578 SITE 5 AC4 19 HOH B 602 HOH B 673 HOH B 728 SITE 1 AC5 6 THR B 37 HIS B 191 ASN B 194 TYR B 196 SITE 2 AC5 6 TYR B 375 FMN B 401 SITE 1 AC6 5 GLN B 59 GLN B 62 TYR B 385 THR B 387 SITE 2 AC6 5 GLU B 390 CRYST1 61.214 107.762 141.071 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007089 0.00000