HEADER LIGASE 13-MAR-17 5V58
TITLE CRYSTAL STRUCTURE OF HUMAN PROLYL-TRNA SYNTHETASE IN COMPLEX WITH AZE-
TITLE 2 SA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: BIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE, CELL PROLIFERATION-
COMPND 5 INDUCING GENE 32 PROTEIN, GLUTAMATYL-PROLYL-TRNA SYNTHETASE;
COMPND 6 EC: 6.1.1.17, 6.1.1.15;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: EPRS, GLNS, PARS, QARS, QPRS, PIG32;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS LIGASE, AMINOACYL-TRNA SYNTHETASE, NON-PROTEINOGENIC AMINO ACIDS
EXPDTA X-RAY DIFFRACTION
AUTHOR H.ZHOU,Y.SONG,P.SCHIMMEL
REVDAT 4 20-NOV-24 5V58 1 REMARK
REVDAT 3 04-OCT-23 5V58 1 REMARK
REVDAT 2 01-JAN-20 5V58 1 REMARK
REVDAT 1 10-JAN-18 5V58 0
JRNL AUTH Y.SONG,H.ZHOU,M.N.VO,Y.SHI,M.H.NAWAZ,O.VARGAS-RODRIGUEZ,
JRNL AUTH 2 J.K.DIEDRICH,J.R.YATES,S.KISHI,K.MUSIER-FORSYTH,P.SCHIMMEL
JRNL TITL DOUBLE MIMICRY EVADES TRNA SYNTHETASE EDITING BY TOXIC
JRNL TITL 2 VEGETABLE-SOURCED NON-PROTEINOGENIC AMINO ACID.
JRNL REF NAT COMMUN V. 8 2281 2017
JRNL REFN ESSN 2041-1723
JRNL PMID 29273753
JRNL DOI 10.1038/S41467-017-02201-Z
REMARK 2
REMARK 2 RESOLUTION. 2.59 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7
REMARK 3 NUMBER OF REFLECTIONS : 13977
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.229
REMARK 3 R VALUE (WORKING SET) : 0.227
REMARK 3 FREE R VALUE : 0.272
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 749
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66
REMARK 3 REFLECTION IN BIN (WORKING SET) : 931
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.78
REMARK 3 BIN R VALUE (WORKING SET) : 0.2910
REMARK 3 BIN FREE R VALUE SET COUNT : 53
REMARK 3 BIN FREE R VALUE : 0.3350
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3741
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 30
REMARK 3 SOLVENT ATOMS : 26
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.33000
REMARK 3 B22 (A**2) : -1.33000
REMARK 3 B33 (A**2) : 4.30000
REMARK 3 B12 (A**2) : -1.33000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.639
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3868 ; 0.004 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3604 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5257 ; 1.045 ; 1.959
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8276 ; 0.695 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 5.160 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;33.340 ;24.023
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;13.108 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;10.846 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.050 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4347 ; 0.003 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 885 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5V58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-17.
REMARK 100 THE DEPOSITION ID IS D_1000226882.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14793
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 200 DATA REDUNDANCY : 10.20
REMARK 200 R MERGE (I) : 0.05700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63
REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5
REMARK 200 DATA REDUNDANCY IN SHELL : 8.10
REMARK 200 R MERGE FOR SHELL (I) : 0.33700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 4HVC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.74
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG3350, 250 MM SODIUM NITRATE, 100
REMARK 280 MM 3-(1-PYRIDINO)-1-PROPANE SULFONATE, EVAPORATION, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.51533
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.25767
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.25767
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.51533
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 37430 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.25767
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 994
REMARK 465 HIS A 995
REMARK 465 HIS A 996
REMARK 465 HIS A 997
REMARK 465 HIS A 998
REMARK 465 HIS A 999
REMARK 465 HIS A 1000
REMARK 465 GLY A 1001
REMARK 465 SER A 1002
REMARK 465 GLY A 1003
REMARK 465 GLU A 1004
REMARK 465 GLY A 1005
REMARK 465 GLN A 1006
REMARK 465 GLY A 1007
REMARK 465 PRO A 1008
REMARK 465 LYS A 1009
REMARK 465 LYS A 1010
REMARK 465 GLN A 1011
REMARK 465 THR A 1012
REMARK 465 THR A 1092
REMARK 465 HIS A 1093
REMARK 465 VAL A 1094
REMARK 465 ALA A 1095
REMARK 465 ASP A 1096
REMARK 465 PHE A 1097
REMARK 465 GLY A 1310
REMARK 465 ILE A 1311
REMARK 465 THR A 1312
REMARK 465 ASN A 1313
REMARK 465 ALA A 1314
REMARK 465 LEU A 1315
REMARK 465 GLN A 1465
REMARK 465 ASP A 1466
REMARK 465 LEU A 1467
REMARK 465 GLU A 1468
REMARK 465 PRO A 1469
REMARK 465 GLY A 1470
REMARK 465 ALA A 1471
REMARK 465 PRO A 1472
REMARK 465 SER A 1473
REMARK 465 GLN A 1490
REMARK 465 PRO A 1491
REMARK 465 GLY A 1492
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A1034 CG CD CE NZ
REMARK 470 LYS A1089 CE NZ
REMARK 470 GLU A1090 CG CD OE1 OE2
REMARK 470 LYS A1091 CG CD CE NZ
REMARK 470 GLU A1100 CG CD OE1 OE2
REMARK 470 LYS A1109 CG CD CE NZ
REMARK 470 LYS A1132 CG CD CE NZ
REMARK 470 PHE A1155 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 HIS A1157 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A1260 CG CD CE NZ
REMARK 470 SER A1316 OG
REMARK 470 GLU A1318 CG CD OE1 OE2
REMARK 470 ASP A1319 CG OD1 OD2
REMARK 470 LYS A1320 CG CD CE NZ
REMARK 470 ARG A1372 CG CD NE CZ NH1 NH2
REMARK 470 LYS A1375 CG CD CE NZ
REMARK 470 LYS A1400 CD CE NZ
REMARK 470 ARG A1463 CG CD NE CZ NH1 NH2
REMARK 470 LYS A1477 CG CD CE NZ
REMARK 470 LYS A1484 CE NZ
REMARK 470 LYS A1494 CG CD CE NZ
REMARK 470 LYS A1499 CG CD CE NZ
REMARK 470 LYS A1503 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A1155 41.68 -87.69
REMARK 500 LYS A1156 -154.84 -92.38
REMARK 500 PHE A1161 -56.57 66.81
REMARK 500 LYS A1484 79.76 -114.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1602 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1448 SG
REMARK 620 2 CYS A1495 SG 96.5
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8X1 A 1601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1602
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5V59 RELATED DB: PDB
DBREF 5V58 A 1003 1512 UNP P07814 SYEP_HUMAN 1003 1512
SEQADV 5V58 MET A 994 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 995 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 996 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 997 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 998 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 999 UNP P07814 EXPRESSION TAG
SEQADV 5V58 HIS A 1000 UNP P07814 EXPRESSION TAG
SEQADV 5V58 GLY A 1001 UNP P07814 EXPRESSION TAG
SEQADV 5V58 SER A 1002 UNP P07814 EXPRESSION TAG
SEQRES 1 A 519 MET HIS HIS HIS HIS HIS HIS GLY SER GLY GLU GLY GLN
SEQRES 2 A 519 GLY PRO LYS LYS GLN THR ARG LEU GLY LEU GLU ALA LYS
SEQRES 3 A 519 LYS GLU GLU ASN LEU ALA ASP TRP TYR SER GLN VAL ILE
SEQRES 4 A 519 THR LYS SER GLU MET ILE GLU TYR HIS ASP ILE SER GLY
SEQRES 5 A 519 CYS TYR ILE LEU ARG PRO TRP ALA TYR ALA ILE TRP GLU
SEQRES 6 A 519 ALA ILE LYS ASP PHE PHE ASP ALA GLU ILE LYS LYS LEU
SEQRES 7 A 519 GLY VAL GLU ASN CYS TYR PHE PRO MET PHE VAL SER GLN
SEQRES 8 A 519 SER ALA LEU GLU LYS GLU LYS THR HIS VAL ALA ASP PHE
SEQRES 9 A 519 ALA PRO GLU VAL ALA TRP VAL THR ARG SER GLY LYS THR
SEQRES 10 A 519 GLU LEU ALA GLU PRO ILE ALA ILE ARG PRO THR SER GLU
SEQRES 11 A 519 THR VAL MET TYR PRO ALA TYR ALA LYS TRP VAL GLN SER
SEQRES 12 A 519 HIS ARG ASP LEU PRO ILE LYS LEU ASN GLN TRP CYS ASN
SEQRES 13 A 519 VAL VAL ARG TRP GLU PHE LYS HIS PRO GLN PRO PHE LEU
SEQRES 14 A 519 ARG THR ARG GLU PHE LEU TRP GLN GLU GLY HIS SER ALA
SEQRES 15 A 519 PHE ALA THR MET GLU GLU ALA ALA GLU GLU VAL LEU GLN
SEQRES 16 A 519 ILE LEU ASP LEU TYR ALA GLN VAL TYR GLU GLU LEU LEU
SEQRES 17 A 519 ALA ILE PRO VAL VAL LYS GLY ARG LYS THR GLU LYS GLU
SEQRES 18 A 519 LYS PHE ALA GLY GLY ASP TYR THR THR THR ILE GLU ALA
SEQRES 19 A 519 PHE ILE SER ALA SER GLY ARG ALA ILE GLN GLY GLY THR
SEQRES 20 A 519 SER HIS HIS LEU GLY GLN ASN PHE SER LYS MET PHE GLU
SEQRES 21 A 519 ILE VAL PHE GLU ASP PRO LYS ILE PRO GLY GLU LYS GLN
SEQRES 22 A 519 PHE ALA TYR GLN ASN SER TRP GLY LEU THR THR ARG THR
SEQRES 23 A 519 ILE GLY VAL MET THR MET VAL HIS GLY ASP ASN MET GLY
SEQRES 24 A 519 LEU VAL LEU PRO PRO ARG VAL ALA CYS VAL GLN VAL VAL
SEQRES 25 A 519 ILE ILE PRO CYS GLY ILE THR ASN ALA LEU SER GLU GLU
SEQRES 26 A 519 ASP LYS GLU ALA LEU ILE ALA LYS CYS ASN ASP TYR ARG
SEQRES 27 A 519 ARG ARG LEU LEU SER VAL ASN ILE ARG VAL ARG ALA ASP
SEQRES 28 A 519 LEU ARG ASP ASN TYR SER PRO GLY TRP LYS PHE ASN HIS
SEQRES 29 A 519 TRP GLU LEU LYS GLY VAL PRO ILE ARG LEU GLU VAL GLY
SEQRES 30 A 519 PRO ARG ASP MET LYS SER CYS GLN PHE VAL ALA VAL ARG
SEQRES 31 A 519 ARG ASP THR GLY GLU LYS LEU THR VAL ALA GLU ASN GLU
SEQRES 32 A 519 ALA GLU THR LYS LEU GLN ALA ILE LEU GLU ASP ILE GLN
SEQRES 33 A 519 VAL THR LEU PHE THR ARG ALA SER GLU ASP LEU LYS THR
SEQRES 34 A 519 HIS MET VAL VAL ALA ASN THR MET GLU ASP PHE GLN LYS
SEQRES 35 A 519 ILE LEU ASP SER GLY LYS ILE VAL GLN ILE PRO PHE CYS
SEQRES 36 A 519 GLY GLU ILE ASP CYS GLU ASP TRP ILE LYS LYS THR THR
SEQRES 37 A 519 ALA ARG ASP GLN ASP LEU GLU PRO GLY ALA PRO SER MET
SEQRES 38 A 519 GLY ALA LYS SER LEU CYS ILE PRO PHE LYS PRO LEU CYS
SEQRES 39 A 519 GLU LEU GLN PRO GLY ALA LYS CYS VAL CYS GLY LYS ASN
SEQRES 40 A 519 PRO ALA LYS TYR TYR THR LEU PHE GLY ARG SER TYR
HET 8X1 A1601 29
HET ZN A1602 1
HETNAM 8X1 5'-O-{[(2S)-AZETIDINE-2-CARBONYL]SULFAMOYL}ADENOSINE
HETNAM ZN ZINC ION
FORMUL 2 8X1 C14 H19 N7 O7 S
FORMUL 3 ZN ZN 2+
FORMUL 4 HOH *26(H2 O)
HELIX 1 AA1 ASN A 1023 SER A 1035 1 13
HELIX 2 AA2 ARG A 1050 LEU A 1071 1 22
HELIX 3 AA3 SER A 1083 LYS A 1091 1 9
HELIX 4 AA4 SER A 1122 VAL A 1134 1 13
HELIX 5 AA5 SER A 1136 LEU A 1140 5 5
HELIX 6 AA6 THR A 1178 GLU A 1199 1 22
HELIX 7 AA7 GLN A 1246 PHE A 1252 1 7
HELIX 8 AA8 THR A 1277 GLY A 1288 1 12
HELIX 9 AA9 GLU A 1317 SER A 1336 1 20
HELIX 10 AB1 SER A 1350 GLY A 1362 1 13
HELIX 11 AB2 GLY A 1370 SER A 1376 1 7
HELIX 12 AB3 GLU A 1396 HIS A 1423 1 28
HELIX 13 AB4 THR A 1429 SER A 1439 1 11
HELIX 14 AB5 GLU A 1450 ASP A 1464 1 15
SHEET 1 AA1 2 ILE A1038 TYR A1040 0
SHEET 2 AA1 2 TYR A1047 LEU A1049 -1 O ILE A1048 N GLU A1039
SHEET 1 AA211 GLU A1074 ASN A1075 0
SHEET 2 AA211 ILE A1142 VAL A1151 1 O LYS A1143 N GLU A1074
SHEET 3 AA211 GLU A1166 PHE A1176 -1 O HIS A1173 N LEU A1144
SHEET 4 AA211 TYR A1269 THR A1276 -1 O TYR A1269 N PHE A1176
SHEET 5 AA211 ARG A1234 GLY A1245 -1 N HIS A1242 O SER A1272
SHEET 6 AA211 TYR A1221 ILE A1229 -1 N TYR A1221 O HIS A1243
SHEET 7 AA211 VAL A1206 ARG A1209 -1 N GLY A1208 O THR A1224
SHEET 8 AA211 LYS A1477 PRO A1482 -1 O ILE A1481 N ARG A1209
SHEET 9 AA211 TYR A1504 GLY A1509 -1 O LEU A1507 N LEU A1479
SHEET 10 AA211 ILE A1442 PHE A1447 -1 N VAL A1443 O PHE A1508
SHEET 11 AA211 MET A1424 VAL A1426 1 N VAL A1425 O GLN A1444
SHEET 1 AA3 3 PHE A1081 VAL A1082 0
SHEET 2 AA3 3 THR A1110 ILE A1118 -1 O ALA A1117 N VAL A1082
SHEET 3 AA3 3 TRP A1103 SER A1107 -1 N VAL A1104 O ILE A1116
SHEET 1 AA4 2 VAL A1255 GLU A1257 0
SHEET 2 AA4 2 LYS A1265 PHE A1267 -1 O GLN A1266 N PHE A1256
SHEET 1 AA5 5 VAL A1341 ALA A1343 0
SHEET 2 AA5 5 VAL A1304 PRO A1308 1 N ILE A1306 O ARG A1342
SHEET 3 AA5 5 ILE A1365 VAL A1369 1 O LEU A1367 N ILE A1307
SHEET 4 AA5 5 GLN A1378 ARG A1383 -1 O VAL A1380 N GLU A1368
SHEET 5 AA5 5 LYS A1389 ALA A1393 -1 O LEU A1390 N ALA A1381
SSBOND 1 CYS A 1453 CYS A 1497 1555 1555 2.03
LINK SG CYS A1448 ZN ZN A1602 1555 1555 2.56
LINK SG CYS A1495 ZN ZN A1602 1555 1555 2.62
CISPEP 1 LEU A 1140 PRO A 1141 0 2.27
SITE 1 AC1 16 THR A1121 GLU A1123 ARG A1152 GLU A1154
SITE 2 AC1 16 PHE A1161 LEU A1162 THR A1164 PHE A1167
SITE 3 AC1 16 TRP A1169 GLN A1237 GLY A1239 THR A1240
SITE 4 AC1 16 HIS A1242 GLY A1274 THR A1276 ARG A1278
SITE 1 AC2 5 CYS A1448 CYS A1453 CYS A1495 CYS A1497
SITE 2 AC2 5 ASN A1500
CRYST1 86.766 86.766 108.773 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011525 0.006654 0.000000 0.00000
SCALE2 0.000000 0.013308 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009193 0.00000