HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAR-17 5V6U TITLE CRYSTAL STRUCTURE OF HUMAN CASPASE-7 SOAKED WITH ALLOSTERIC INHIBITOR TITLE 2 2-[(2-ACETYLPHENYL)SULFANYL]BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-336; COMPND 5 SYNONYM: CASP-7, APOPTOTIC PROTEASE MCH-3, CMH-1, ICE-LIKE APOPTOTIC COMPND 6 PROTEASE 3, ICE-LAP3; COMPND 7 EC: 3.4.22.60; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, PROTEASE, INHIBITOR, ALLOSTERIC, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.R.VANCE,L.GAKHAR,M.A.SPIES REVDAT 3 04-OCT-23 5V6U 1 REMARK REVDAT 2 22-NOV-17 5V6U 1 JRNL REVDAT 1 18-OCT-17 5V6U 0 JRNL AUTH N.R.VANCE,L.GAKHAR,M.A.SPIES JRNL TITL ALLOSTERIC TUNING OF CASPASE-7: A FRAGMENT-BASED DRUG JRNL TITL 2 DISCOVERY APPROACH. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 14443 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28940929 JRNL DOI 10.1002/ANIE.201706959 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0862 - 5.3541 1.00 3063 162 0.1986 0.2423 REMARK 3 2 5.3541 - 4.2505 1.00 2906 150 0.1622 0.2050 REMARK 3 3 4.2505 - 3.7135 1.00 2863 175 0.1695 0.2411 REMARK 3 4 3.7135 - 3.3740 1.00 2887 137 0.1844 0.2376 REMARK 3 5 3.3740 - 3.1323 1.00 2855 147 0.2124 0.3059 REMARK 3 6 3.1323 - 2.9476 1.00 2825 139 0.2339 0.3072 REMARK 3 7 2.9476 - 2.8000 1.00 2917 112 0.2768 0.3172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3300 REMARK 3 ANGLE : 1.498 4449 REMARK 3 CHIRALITY : 0.077 498 REMARK 3 PLANARITY : 0.009 572 REMARK 3 DIHEDRAL : 6.305 2343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.001374 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2016-01-11 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.02400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDB ENTRY 1F1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.57200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.78600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.78600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.57200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 PHE A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 LEU A 35 REMARK 465 PHE A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 MET A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 ILE A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 VAL A 55 REMARK 465 PRO A 56 REMARK 465 ARG A 187 REMARK 465 GLY A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 LEU A 191 REMARK 465 ASP A 192 REMARK 465 ASP A 193 REMARK 465 GLY A 194 REMARK 465 ILE A 195 REMARK 465 GLN A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 ILE A 202 REMARK 465 ASN A 203 REMARK 465 ASP A 204 REMARK 465 THR A 205 REMARK 465 ASP A 206 REMARK 465 ALA A 207 REMARK 465 ASN A 208 REMARK 465 PRO A 209 REMARK 465 ARG A 210 REMARK 465 TYR A 211 REMARK 465 VAL A 226 REMARK 465 PRO A 227 REMARK 465 GLY A 228 REMARK 465 TYR A 229 REMARK 465 TYR A 230 REMARK 465 GLU A 274 REMARK 465 SER A 275 REMARK 465 GLN A 276 REMARK 465 SER A 277 REMARK 465 ASP A 278 REMARK 465 ASP A 279 REMARK 465 PRO A 280 REMARK 465 HIS A 281 REMARK 465 PHE A 282 REMARK 465 HIS A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 CYS B 7 REMARK 465 ILE B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 ASN B 18 REMARK 465 GLU B 19 REMARK 465 ASP B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 ASP B 23 REMARK 465 ALA B 24 REMARK 465 LYS B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ARG B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 PHE B 31 REMARK 465 VAL B 32 REMARK 465 PRO B 33 REMARK 465 SER B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 36 REMARK 465 SER B 37 REMARK 465 LYS B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 LYS B 41 REMARK 465 ASN B 42 REMARK 465 VAL B 43 REMARK 465 THR B 44 REMARK 465 MET B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 ILE B 48 REMARK 465 LYS B 49 REMARK 465 VAL B 55 REMARK 465 PRO B 56 REMARK 465 GLY B 188 REMARK 465 THR B 189 REMARK 465 GLU B 190 REMARK 465 LEU B 191 REMARK 465 ASP B 192 REMARK 465 ASP B 193 REMARK 465 GLY B 194 REMARK 465 ILE B 195 REMARK 465 GLN B 196 REMARK 465 ALA B 197 REMARK 465 ASP B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 PRO B 201 REMARK 465 ILE B 202 REMARK 465 ASN B 203 REMARK 465 ASP B 204 REMARK 465 THR B 205 REMARK 465 ASP B 206 REMARK 465 ALA B 207 REMARK 465 ASN B 208 REMARK 465 PRO B 209 REMARK 465 ARG B 210 REMARK 465 TYR B 211 REMARK 465 GLY B 228 REMARK 465 TYR B 229 REMARK 465 TYR B 230 REMARK 465 GLU B 274 REMARK 465 SER B 275 REMARK 465 GLN B 276 REMARK 465 SER B 277 REMARK 465 ASP B 278 REMARK 465 ASP B 279 REMARK 465 PRO B 280 REMARK 465 HIS B 281 REMARK 465 PHE B 282 REMARK 465 HIS B 283 REMARK 465 GLU B 284 REMARK 465 LYS B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 VAL A 81 CG1 CG2 REMARK 470 THR A 82 OG1 CG2 REMARK 470 VAL A 86 CG1 CG2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 THR A 225 OG1 CG2 REMARK 470 SER A 231 OG REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 235 CG CD REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 SER A 239 OG REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 272 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 303 CG CD OE1 NE2 REMARK 470 THR B 50 OG1 CG2 REMARK 470 THR B 51 OG1 CG2 REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 TRP B 232 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 232 CZ3 CH2 REMARK 470 ARG B 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 SER B 239 OG REMARK 470 GLN B 243 CG CD OE1 NE2 REMARK 470 HIS B 272 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 540 O HOH B 543 1.95 REMARK 500 O HOH A 424 O HOH A 426 1.98 REMARK 500 NZ LYS B 92 O ARG B 237 2.09 REMARK 500 O HOH A 426 O HOH A 427 2.16 REMARK 500 O PHE A 273 NZ LYS A 286 2.17 REMARK 500 O2 8YM B 401 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 95 CB GLU B 95 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 59 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 CYS B 186 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 129 178.40 -58.90 REMARK 500 SER A 143 -169.26 -168.12 REMARK 500 CYS A 171 72.02 -150.41 REMARK 500 PHE A 301 48.02 -87.20 REMARK 500 ASN B 148 -3.44 73.72 REMARK 500 CYS B 186 105.52 -58.45 REMARK 500 PHE B 301 48.31 -86.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8YM B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V6Z RELATED DB: PDB DBREF 5V6U A 1 303 UNP P55210 CASP7_HUMAN 34 336 DBREF 5V6U B 1 303 UNP P55210 CASP7_HUMAN 34 336 SEQRES 1 A 303 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 A 303 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 A 303 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 A 303 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 A 303 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 A 303 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 A 303 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 A 303 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 A 303 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 A 303 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 A 303 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 A 303 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 A 303 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 A 303 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 A 303 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 A 303 GLN ALA ASP SER GLY PRO ILE ASN ASP THR ASP ALA ASN SEQRES 17 A 303 PRO ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE SEQRES 18 A 303 ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SER SEQRES 19 A 303 PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU CYS SER SEQRES 20 A 303 ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET GLN SEQRES 21 A 303 ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE SEQRES 22 A 303 GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS LYS SEQRES 23 A 303 GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU LEU SEQRES 24 A 303 TYR PHE SER GLN SEQRES 1 B 303 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 B 303 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 B 303 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 B 303 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 B 303 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 B 303 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 B 303 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 B 303 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 B 303 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 B 303 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 B 303 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 B 303 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 B 303 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 B 303 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 B 303 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 B 303 GLN ALA ASP SER GLY PRO ILE ASN ASP THR ASP ALA ASN SEQRES 17 B 303 PRO ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE SEQRES 18 B 303 ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SER SEQRES 19 B 303 PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU CYS SER SEQRES 20 B 303 ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET GLN SEQRES 21 B 303 ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE SEQRES 22 B 303 GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS LYS SEQRES 23 B 303 GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU LEU SEQRES 24 B 303 TYR PHE SER GLN HET 8YM B 401 19 HETNAM 8YM 2-[(2-ACETYLPHENYL)SULFANYL]BENZOIC ACID FORMUL 3 8YM C15 H12 O3 S FORMUL 4 HOH *76(H2 O) HELIX 1 AA1 GLY A 89 GLY A 105 1 17 HELIX 2 AA2 SER A 115 GLU A 129 1 15 HELIX 3 AA3 ILE A 159 HIS A 165 1 7 HELIX 4 AA4 CYS A 171 LEU A 175 5 5 HELIX 5 AA5 TRP A 240 GLY A 253 1 14 HELIX 6 AA6 GLU A 257 PHE A 273 1 17 HELIX 7 AA7 ASP B 79 GLY B 83 5 5 HELIX 8 AA8 GLY B 89 GLY B 105 1 17 HELIX 9 AA9 SER B 115 GLU B 129 1 15 HELIX 10 AB1 ILE B 159 HIS B 165 1 7 HELIX 11 AB2 PHE B 166 LEU B 175 5 10 HELIX 12 AB3 SER B 239 GLY B 253 1 15 HELIX 13 AB4 GLU B 257 HIS B 272 1 16 SHEET 1 AA112 PHE A 106 ASN A 112 0 SHEET 2 AA112 LYS A 66 ASN A 74 1 N ASN A 74 O TYR A 111 SHEET 3 AA112 ALA A 134 HIS A 144 1 O ILE A 140 N ILE A 73 SHEET 4 AA112 LYS A 179 CYS A 186 1 O PHE A 182 N LEU A 141 SHEET 5 AA112 PHE A 219 SER A 224 1 O LEU A 220 N PHE A 181 SHEET 6 AA112 CYS A 290 SER A 293 -1 O VAL A 292 N PHE A 221 SHEET 7 AA112 CYS B 290 SER B 293 -1 O VAL B 291 N SER A 293 SHEET 8 AA112 PHE B 219 TYR B 223 -1 N PHE B 221 O VAL B 292 SHEET 9 AA112 LYS B 179 CYS B 186 1 N PHE B 181 O ALA B 222 SHEET 10 AA112 PHE B 137 GLU B 146 1 N LEU B 141 O GLN B 184 SHEET 11 AA112 GLY B 68 ASN B 74 1 N ILE B 71 O ILE B 140 SHEET 12 AA112 PHE B 106 ASN B 112 1 O TYR B 111 N ASN B 74 SHEET 1 AA212 PHE A 106 ASN A 112 0 SHEET 2 AA212 LYS A 66 ASN A 74 1 N ASN A 74 O TYR A 111 SHEET 3 AA212 ALA A 134 HIS A 144 1 O ILE A 140 N ILE A 73 SHEET 4 AA212 LYS A 179 CYS A 186 1 O PHE A 182 N LEU A 141 SHEET 5 AA212 PHE A 219 SER A 224 1 O LEU A 220 N PHE A 181 SHEET 6 AA212 CYS A 290 SER A 293 -1 O VAL A 292 N PHE A 221 SHEET 7 AA212 CYS B 290 SER B 293 -1 O VAL B 291 N SER A 293 SHEET 8 AA212 PHE B 219 TYR B 223 -1 N PHE B 221 O VAL B 292 SHEET 9 AA212 LYS B 179 CYS B 186 1 N PHE B 181 O ALA B 222 SHEET 10 AA212 PHE B 137 GLU B 146 1 N LEU B 141 O GLN B 184 SHEET 11 AA212 VAL B 149 GLY B 152 -1 O TYR B 151 N HIS B 144 SHEET 12 AA212 GLY B 155 PRO B 158 -1 O THR B 157 N ILE B 150 SHEET 1 AA3 2 VAL A 149 GLY A 152 0 SHEET 2 AA3 2 GLY A 155 PRO A 158 -1 O THR A 157 N ILE A 150 SHEET 1 AA4 2 ARG A 233 SER A 234 0 SHEET 2 AA4 2 GLY A 238 SER A 239 -1 O GLY A 238 N SER A 234 SSBOND 1 CYS A 100 CYS A 246 1555 1555 2.07 SSBOND 2 CYS B 100 CYS B 246 1555 1555 2.09 SITE 1 AC1 11 LYS B 160 THR B 163 ALA B 164 ARG B 167 SITE 2 AC1 11 GLU B 216 PHE B 219 PHE B 221 TYR B 223 SITE 3 AC1 11 MET B 294 HOH B 501 HOH B 531 CRYST1 88.393 88.393 185.358 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011313 0.006532 0.000000 0.00000 SCALE2 0.000000 0.013063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005395 0.00000