HEADER TRANSPORT PROTEIN 21-MAR-17 5V85 TITLE THE CRYSTAL STRUCTURE OF THE PROTEIN OF DEGV FAMILY COG1307 FROM TITLE 2 RUMINOCOCCUS GNAVUS ATCC 29149 (ALTERNATIVE REFINEMENT OF PDB 3JR7 TITLE 3 WITH VACCENIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EDD DOMAIN PROTEIN, DEGV FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS ATCC 29149; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 ATCC: 29149; SOURCE 5 GENE: RUMGNA_03254; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS DEGV, GUT MICROBIOME, STRUCTURAL GENOMICS, PSI-2, C18:1, VACCENIC KEYWDS 2 ACID, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,M.ERICSON,C.SUBRAMANIAN,S.W.WHITE,C.O.ROCK REVDAT 2 16-OCT-24 5V85 1 REMARK REVDAT 1 21-NOV-18 5V85 0 JRNL AUTH M.G.CUYPERS,M.ERICSON,C.SUBRAMANIAN,T.C.BROUSSARD, JRNL AUTH 2 D.J.MILLER,S.W.WHITE,C.O.ROCK JRNL TITL THE CRYSTAL STRUCTURE OF THE STAPHYLOCOCCUS AUREUS FATTY JRNL TITL 2 ACID KINASE (FAK) B1 PROTEIN LOADED WITH PALMITIC ACID TO JRNL TITL 3 1.83 ANGSTROEM RESOLUTION JRNL REF J.BIOL.CHEM. 2018 JRNL REFN ESSN 1083-351X REMARK 0 REMARK 0 THIS ENTRY REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL DATA REMARK 0 IN 3JR7, DETERMINED BY R.ZHANG,C.HATZOS,S.CLANCY,A.JOACHIMIAK, REMARK 0 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3JR7 REMARK 0 AUTH R.ZHANG,C.HATZOS,S.CLANCY,A.JOACHIMIAK REMARK 0 TITL THE CRYSTAL STRUCTURE OF THE PROTEIN OF DEGV FAMILY COG1307 REMARK 0 TITL 2 WITH UNKNOWN FUNCTION FROM RUMINOCOCCUS GNAVUS ATCC 29149 REMARK 0 REF TO BE PUBLISHED REMARK 0 REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 58785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8903 - 5.5145 0.97 2798 127 0.1884 0.1863 REMARK 3 2 5.5145 - 4.3815 0.98 2704 142 0.1405 0.1557 REMARK 3 3 4.3815 - 3.8289 0.99 2671 141 0.1353 0.1539 REMARK 3 4 3.8289 - 3.4794 0.99 2681 136 0.1474 0.1925 REMARK 3 5 3.4794 - 3.2303 0.99 2633 158 0.1595 0.2025 REMARK 3 6 3.2303 - 3.0401 0.99 2642 167 0.1814 0.1917 REMARK 3 7 3.0401 - 2.8880 1.00 2661 142 0.1747 0.2175 REMARK 3 8 2.8880 - 2.7623 1.00 2677 123 0.1905 0.2260 REMARK 3 9 2.7623 - 2.6561 1.00 2649 160 0.1812 0.2260 REMARK 3 10 2.6561 - 2.5645 1.00 2642 148 0.1775 0.2118 REMARK 3 11 2.5645 - 2.4843 1.00 2640 138 0.1758 0.2097 REMARK 3 12 2.4843 - 2.4133 1.00 2661 135 0.1725 0.1926 REMARK 3 13 2.4133 - 2.3498 1.00 2655 140 0.1758 0.1889 REMARK 3 14 2.3498 - 2.2925 1.00 2642 140 0.1789 0.2407 REMARK 3 15 2.2925 - 2.2404 1.00 2634 152 0.1785 0.2401 REMARK 3 16 2.2404 - 2.1928 1.00 2623 128 0.1785 0.2084 REMARK 3 17 2.1928 - 2.1489 1.00 2624 153 0.1831 0.2240 REMARK 3 18 2.1489 - 2.1084 1.00 2657 129 0.1756 0.2107 REMARK 3 19 2.1084 - 2.0707 1.00 2644 137 0.1854 0.2107 REMARK 3 20 2.0707 - 2.0356 1.00 2640 139 0.1961 0.2372 REMARK 3 21 2.0356 - 2.0028 0.99 2637 135 0.2280 0.2782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4503 REMARK 3 ANGLE : 0.533 6068 REMARK 3 CHIRALITY : 0.044 686 REMARK 3 PLANARITY : 0.003 784 REMARK 3 DIHEDRAL : 6.423 3771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.3722 41.8283 40.4923 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.1365 REMARK 3 T33: 0.1569 T12: 0.0001 REMARK 3 T13: -0.0089 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3545 L22: 0.2636 REMARK 3 L33: 0.5430 L12: -0.1156 REMARK 3 L13: -0.0071 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.0349 S13: 0.0067 REMARK 3 S21: -0.0393 S22: -0.0046 S23: 0.0215 REMARK 3 S31: 0.0074 S32: -0.0202 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226614. REMARK 200 REMARK 200 SEE THE ORIGINAL DATA, ENTRY 3JR7 REMARK 280 REMARK 280 SEE THE ORIGINAL DATA, ENTRY 3JR7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.30700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.61400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.61400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.30700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 TYR A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 7 REMARK 465 TRP A 8 REMARK 465 TRP A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 VAL A 13 REMARK 465 TRP A 14 REMARK 465 PHE A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 LEU A 198 REMARK 465 VAL A 199 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 TYR B 5 REMARK 465 ASN B 6 REMARK 465 ARG B 7 REMARK 465 TRP B 8 REMARK 465 TRP B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 TRP B 14 REMARK 465 PHE B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 201 REMARK 465 ALA B 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 546 O HOH B 647 1.82 REMARK 500 O HOH B 418 O HOH B 648 1.82 REMARK 500 O HOH A 501 O HOH A 667 1.89 REMARK 500 O HOH B 585 O HOH B 631 1.92 REMARK 500 O1 PO4 A 303 O HOH A 401 2.01 REMARK 500 O HOH B 557 O HOH B 629 2.04 REMARK 500 O HOH B 574 O HOH B 620 2.10 REMARK 500 OE2 GLU B 173 O HOH B 401 2.11 REMARK 500 O HOH A 499 O HOH A 529 2.13 REMARK 500 O HOH B 595 O HOH B 690 2.17 REMARK 500 O HOH B 598 O HOH B 623 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 652 O HOH B 507 3564 2.02 REMARK 500 O HOH B 478 O HOH B 621 5565 2.04 REMARK 500 O HOH B 701 O HOH B 704 5665 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 20 47.00 -109.97 REMARK 500 GLU A 52 -110.68 56.62 REMARK 500 SER A 138 -153.36 -156.19 REMARK 500 SER A 138 -153.36 -155.35 REMARK 500 SER A 140 -125.91 54.59 REMARK 500 CYS A 256 70.93 -153.90 REMARK 500 ASN A 290 169.60 67.20 REMARK 500 GLU B 52 -117.53 52.97 REMARK 500 SER B 138 -155.27 -153.87 REMARK 500 SER B 140 -126.69 54.37 REMARK 500 ASN B 204 42.97 -156.06 REMARK 500 CYS B 256 66.64 -155.85 REMARK 500 SER B 282 -179.37 -65.65 REMARK 500 ASN B 290 168.61 67.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 713 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VCA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VCA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JR7 RELATED DB: PDB REMARK 900 3JR7 IS AN ORIGINAL DATA. THE CURRENT ENTRY IS AN ALTERNATIVE REMARK 900 MODELING OF 3JR7. IN PARTICULAR, LIGAND PEG IN 3JR7 WAS REMARK 900 ALTERNATIVELY MODELED WITH FATTY ACID (VACCENIC ACID), CONSISTENT REMARK 900 WITH FATTY ACID-BINDING PROTEIN FUNCTION. DBREF 5V85 A 2 298 UNP A7B6P0 A7B6P0_RUMGN 36 332 DBREF 5V85 B 2 298 UNP A7B6P0 A7B6P0_RUMGN 36 332 SEQADV 5V85 MSE A 1 UNP A7B6P0 INITIATING METHIONINE SEQADV 5V85 MSE B 1 UNP A7B6P0 INITIATING METHIONINE SEQRES 1 A 298 MSE LYS THR THR TYR ASN ARG TRP TRP LYS LYS LYS VAL SEQRES 2 A 298 TRP PHE GLY ARG LYS ASP MSE SER TYR LYS VAL ILE VAL SEQRES 3 A 298 ASP SER CYS GLY GLU PHE THR PRO GLU MSE LYS ALA ASP SEQRES 4 A 298 GLY GLY PHE GLU HIS VAL ALA LEU GLY ILE GLN ILE GLU SEQRES 5 A 298 ASP THR GLN TRP THR ASP ASP ASP SER LEU LYS GLN GLU SEQRES 6 A 298 GLU LEU LEU LEU LYS ILE ALA GLU SER THR SER CYS ALA SEQRES 7 A 298 LYS THR SER CYS PRO SER PRO GLU ARG TYR MSE GLU SER SEQRES 8 A 298 TYR HIS CYS ASP ALA GLU ARG ILE TYR VAL VAL THR LEU SEQRES 9 A 298 SER ALA GLU LEU SER GLY SER TYR ASN SER ALA VAL LEU SEQRES 10 A 298 GLY LYS ASN LEU TYR GLU GLU GLU TYR GLY GLU LYS GLN SEQRES 11 A 298 ILE HIS VAL PHE ASN SER ARG SER ALA SER VAL GLY GLU SEQRES 12 A 298 THR LEU ILE ALA LEU LYS VAL GLN GLN CYS GLU LYS ALA SEQRES 13 A 298 GLY MSE THR PHE GLU GLU VAL VAL GLU SER VAL GLU CYS SEQRES 14 A 298 TYR ILE GLU GLU GLN HIS THR TYR PHE VAL LEU GLU ASN SEQRES 15 A 298 LEU ASP THR LEU ARG LYS ASN GLY ARG LEU THR GLY ILE SEQRES 16 A 298 LYS SER LEU VAL ALA GLY ALA LEU ASN ILE LYS PRO ILE SEQRES 17 A 298 MSE GLY SER THR PRO GLN GLY THR ILE CYS GLN LYS GLU SEQRES 18 A 298 LYS ALA ARG GLY MSE LYS LYS ALA LEU VAL LYS MSE ALA SEQRES 19 A 298 ASP CYS VAL ALA ALA ASP VAL VAL ASN ALA GLY ASP LYS SEQRES 20 A 298 ILE LEU ALA ILE ALA HIS CYS ASN CYS GLU GLU ARG ALA SEQRES 21 A 298 LYS GLU VAL GLN ARG LEU LEU LYS GLU ARG PHE ALA VAL SEQRES 22 A 298 LYS SER SER PHE ILE VAL ASP THR SER GLY ILE SER THR SEQRES 23 A 298 VAL TYR ALA ASN ASP GLY GLY ILE ILE VAL VAL VAL SEQRES 1 B 298 MSE LYS THR THR TYR ASN ARG TRP TRP LYS LYS LYS VAL SEQRES 2 B 298 TRP PHE GLY ARG LYS ASP MSE SER TYR LYS VAL ILE VAL SEQRES 3 B 298 ASP SER CYS GLY GLU PHE THR PRO GLU MSE LYS ALA ASP SEQRES 4 B 298 GLY GLY PHE GLU HIS VAL ALA LEU GLY ILE GLN ILE GLU SEQRES 5 B 298 ASP THR GLN TRP THR ASP ASP ASP SER LEU LYS GLN GLU SEQRES 6 B 298 GLU LEU LEU LEU LYS ILE ALA GLU SER THR SER CYS ALA SEQRES 7 B 298 LYS THR SER CYS PRO SER PRO GLU ARG TYR MSE GLU SER SEQRES 8 B 298 TYR HIS CYS ASP ALA GLU ARG ILE TYR VAL VAL THR LEU SEQRES 9 B 298 SER ALA GLU LEU SER GLY SER TYR ASN SER ALA VAL LEU SEQRES 10 B 298 GLY LYS ASN LEU TYR GLU GLU GLU TYR GLY GLU LYS GLN SEQRES 11 B 298 ILE HIS VAL PHE ASN SER ARG SER ALA SER VAL GLY GLU SEQRES 12 B 298 THR LEU ILE ALA LEU LYS VAL GLN GLN CYS GLU LYS ALA SEQRES 13 B 298 GLY MSE THR PHE GLU GLU VAL VAL GLU SER VAL GLU CYS SEQRES 14 B 298 TYR ILE GLU GLU GLN HIS THR TYR PHE VAL LEU GLU ASN SEQRES 15 B 298 LEU ASP THR LEU ARG LYS ASN GLY ARG LEU THR GLY ILE SEQRES 16 B 298 LYS SER LEU VAL ALA GLY ALA LEU ASN ILE LYS PRO ILE SEQRES 17 B 298 MSE GLY SER THR PRO GLN GLY THR ILE CYS GLN LYS GLU SEQRES 18 B 298 LYS ALA ARG GLY MSE LYS LYS ALA LEU VAL LYS MSE ALA SEQRES 19 B 298 ASP CYS VAL ALA ALA ASP VAL VAL ASN ALA GLY ASP LYS SEQRES 20 B 298 ILE LEU ALA ILE ALA HIS CYS ASN CYS GLU GLU ARG ALA SEQRES 21 B 298 LYS GLU VAL GLN ARG LEU LEU LYS GLU ARG PHE ALA VAL SEQRES 22 B 298 LYS SER SER PHE ILE VAL ASP THR SER GLY ILE SER THR SEQRES 23 B 298 VAL TYR ALA ASN ASP GLY GLY ILE ILE VAL VAL VAL MODRES 5V85 MSE A 20 MET MODIFIED RESIDUE MODRES 5V85 MSE A 36 MET MODIFIED RESIDUE MODRES 5V85 MSE A 89 MET MODIFIED RESIDUE MODRES 5V85 MSE A 158 MET MODIFIED RESIDUE MODRES 5V85 MSE A 209 MET MODIFIED RESIDUE MODRES 5V85 MSE A 226 MET MODIFIED RESIDUE MODRES 5V85 MSE A 233 MET MODIFIED RESIDUE MODRES 5V85 MSE B 20 MET MODIFIED RESIDUE MODRES 5V85 MSE B 36 MET MODIFIED RESIDUE MODRES 5V85 MSE B 89 MET MODIFIED RESIDUE MODRES 5V85 MSE B 158 MET MODIFIED RESIDUE MODRES 5V85 MSE B 209 MET MODIFIED RESIDUE MODRES 5V85 MSE B 226 MET MODIFIED RESIDUE MODRES 5V85 MSE B 233 MET MODIFIED RESIDUE HET MSE A 20 16 HET MSE A 36 8 HET MSE A 89 8 HET MSE A 158 8 HET MSE A 209 8 HET MSE A 226 8 HET MSE A 233 8 HET MSE B 20 8 HET MSE B 36 8 HET MSE B 89 8 HET MSE B 158 8 HET MSE B 209 8 HET MSE B 226 8 HET MSE B 233 8 HET VCA A 301 20 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 A 304 5 HET NA A 305 1 HET VCA B 301 20 HET PO4 B 302 5 HET NA B 303 1 HETNAM MSE SELENOMETHIONINE HETNAM VCA VACCENIC ACID HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN VCA (11E)-OCTADEC-11-ENOIC ACID FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 VCA 2(C18 H34 O2) FORMUL 4 PO4 4(O4 P 3-) FORMUL 7 NA 2(NA 1+) FORMUL 11 HOH *609(H2 O) HELIX 1 AA1 THR A 33 ALA A 38 1 6 HELIX 2 AA2 LYS A 63 SER A 74 1 12 HELIX 3 AA3 SER A 84 HIS A 93 1 10 HELIX 4 AA4 GLY A 110 GLY A 127 1 18 HELIX 5 AA5 SER A 140 ALA A 156 1 17 HELIX 6 AA6 THR A 159 GLN A 174 1 16 HELIX 7 AA7 LEU A 183 ASN A 189 1 7 HELIX 8 AA8 GLY A 225 VAL A 241 1 17 HELIX 9 AA9 ASN A 243 ASP A 246 5 4 HELIX 10 AB1 CYS A 256 PHE A 271 1 16 HELIX 11 AB2 SER A 282 ASN A 290 1 9 HELIX 12 AB3 THR B 33 ALA B 38 1 6 HELIX 13 AB4 LYS B 63 SER B 74 1 12 HELIX 14 AB5 SER B 84 HIS B 93 1 10 HELIX 15 AB6 GLY B 110 TYR B 126 1 17 HELIX 16 AB7 SER B 140 ALA B 156 1 17 HELIX 17 AB8 THR B 159 GLN B 174 1 16 HELIX 18 AB9 LEU B 183 ASN B 189 1 7 HELIX 19 AC1 GLY B 225 VAL B 241 1 17 HELIX 20 AC2 ASN B 243 ASP B 246 5 4 HELIX 21 AC3 CYS B 256 PHE B 271 1 16 HELIX 22 AC4 SER B 282 ASN B 290 1 9 SHEET 1 AA1 4 PHE A 42 VAL A 45 0 SHEET 2 AA1 4 TYR A 22 ASP A 27 1 N VAL A 26 O GLU A 43 SHEET 3 AA1 4 ARG A 98 THR A 103 1 O TYR A 100 N ILE A 25 SHEET 4 AA1 4 GLN A 130 ASN A 135 1 O PHE A 134 N VAL A 101 SHEET 1 AA2 3 THR A 54 THR A 57 0 SHEET 2 AA2 3 GLY A 48 ILE A 51 -1 N ILE A 49 O TRP A 56 SHEET 3 AA2 3 LYS A 79 SER A 81 -1 O LYS A 79 N GLN A 50 SHEET 1 AA3 6 ILE A 217 ARG A 224 0 SHEET 2 AA3 6 ILE A 205 SER A 211 -1 N LYS A 206 O ALA A 223 SHEET 3 AA3 6 HIS A 175 VAL A 179 -1 N PHE A 178 O MSE A 209 SHEET 4 AA3 6 ILE A 294 VAL A 298 -1 O VAL A 296 N TYR A 177 SHEET 5 AA3 6 ILE A 248 HIS A 253 -1 N ALA A 252 O ILE A 295 SHEET 6 AA3 6 SER A 275 ASP A 280 1 O SER A 275 N LEU A 249 SHEET 1 AA4 4 PHE B 42 VAL B 45 0 SHEET 2 AA4 4 TYR B 22 ASP B 27 1 N VAL B 26 O GLU B 43 SHEET 3 AA4 4 ARG B 98 THR B 103 1 O TYR B 100 N ILE B 25 SHEET 4 AA4 4 GLN B 130 ASN B 135 1 O PHE B 134 N VAL B 101 SHEET 1 AA5 3 THR B 54 THR B 57 0 SHEET 2 AA5 3 GLY B 48 ILE B 51 -1 N ILE B 49 O TRP B 56 SHEET 3 AA5 3 LYS B 79 SER B 81 -1 O LYS B 79 N GLN B 50 SHEET 1 AA6 6 ILE B 217 ARG B 224 0 SHEET 2 AA6 6 ILE B 205 SER B 211 -1 N LYS B 206 O ALA B 223 SHEET 3 AA6 6 HIS B 175 VAL B 179 -1 N PHE B 178 O MSE B 209 SHEET 4 AA6 6 ILE B 294 VAL B 298 -1 O VAL B 296 N TYR B 177 SHEET 5 AA6 6 ILE B 248 HIS B 253 -1 N ALA B 252 O ILE B 295 SHEET 6 AA6 6 SER B 275 ASP B 280 1 O VAL B 279 N ILE B 251 SSBOND 1 CYS A 169 CYS B 169 1555 1555 2.04 LINK C ASP A 19 N AMSE A 20 1555 1555 1.33 LINK C ASP A 19 N BMSE A 20 1555 1555 1.33 LINK C AMSE A 20 N SER A 21 1555 1555 1.33 LINK C BMSE A 20 N SER A 21 1555 1555 1.33 LINK C GLU A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N LYS A 37 1555 1555 1.33 LINK C TYR A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N GLU A 90 1555 1555 1.34 LINK C GLY A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N THR A 159 1555 1555 1.33 LINK C ILE A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N GLY A 210 1555 1555 1.33 LINK C GLY A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N LYS A 227 1555 1555 1.34 LINK C LYS A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N ALA A 234 1555 1555 1.34 LINK C ASP B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N SER B 21 1555 1555 1.33 LINK C AGLU B 35 N MSE B 36 1555 1555 1.33 LINK C BGLU B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N LYS B 37 1555 1555 1.34 LINK C TYR B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N GLU B 90 1555 1555 1.34 LINK C GLY B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N THR B 159 1555 1555 1.33 LINK C ILE B 208 N MSE B 209 1555 1555 1.33 LINK C MSE B 209 N GLY B 210 1555 1555 1.33 LINK C GLY B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N LYS B 227 1555 1555 1.34 LINK C LYS B 232 N MSE B 233 1555 1555 1.33 LINK C MSE B 233 N ALA B 234 1555 1555 1.34 SITE 1 AC1 13 LEU A 47 THR A 80 SER A 81 LEU A 108 SITE 2 AC1 13 SER A 109 ARG A 137 PHE A 178 ARG A 191 SITE 3 AC1 13 SER A 211 GLY A 215 TYR A 288 HOH A 422 SITE 4 AC1 13 HOH A 455 SITE 1 AC2 6 ALA A 223 ARG A 224 LYS A 232 PO4 A 303 SITE 2 AC2 6 HOH A 405 HOH A 427 SITE 1 AC3 6 ILE A 205 LYS A 222 ARG A 224 PO4 A 302 SITE 2 AC3 6 HOH A 401 HOH A 405 SITE 1 AC4 6 ARG A 98 GLN A 130 THR A 159 PHE A 160 SITE 2 AC4 6 HOH A 403 HOH A 408 SITE 1 AC5 14 LEU B 47 THR B 80 SER B 81 CYS B 82 SITE 2 AC5 14 LEU B 108 SER B 109 ARG B 137 PHE B 178 SITE 3 AC5 14 ARG B 191 SER B 211 GLY B 215 TYR B 288 SITE 4 AC5 14 HOH B 425 HOH B 490 SITE 1 AC6 7 ASN A 204 LYS B 23 CYS B 94 ASP B 95 SITE 2 AC6 7 ALA B 96 HOH B 407 HOH B 411 SITE 1 AC7 1 CYS B 77 CRYST1 96.899 96.899 159.921 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010320 0.005958 0.000000 0.00000 SCALE2 0.000000 0.011917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006253 0.00000