HEADER RNA BINDING PROTEIN 21-MAR-17 5V87
TITLE CRYSTAL STRUCTURE OF LARP1-UNIQUE DOMAIN DM15 BOUND TO M7GPPPC
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LA-RELATED PROTEIN 1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: LARP1, KIAA0731, LARP;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS CAP-BINDING, RNA-BINDING, DM15, 5'TOP, RNA BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.J.BERMAN,R.M.LAHR
REVDAT 3 04-OCT-23 5V87 1 REMARK
REVDAT 2 22-NOV-17 5V87 1 REMARK
REVDAT 1 19-APR-17 5V87 0
JRNL AUTH R.M.LAHR,B.D.FONSECA,G.E.CIOTTI,H.A.AL-ASHTAL,J.J.JIA,
JRNL AUTH 2 M.R.NIKLAUS,S.P.BLAGDEN,T.ALAIN,A.J.BERMAN
JRNL TITL LA-RELATED PROTEIN 1 (LARP1) BINDS THE MRNA CAP, BLOCKING
JRNL TITL 2 EIF4F ASSEMBLY ON TOP MRNAS.
JRNL REF ELIFE V. 6 2017
JRNL REFN ESSN 2050-084X
JRNL PMID 28379136
JRNL DOI 10.7554/ELIFE.24146
REMARK 2
REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2
REMARK 3 NUMBER OF REFLECTIONS : 34328
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.183
REMARK 3 R VALUE (WORKING SET) : 0.182
REMARK 3 FREE R VALUE : 0.204
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.740
REMARK 3 FREE R VALUE TEST SET COUNT : 1970
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.9883 - 4.0715 0.94 2445 149 0.1722 0.1855
REMARK 3 2 4.0715 - 3.2339 0.62 1580 96 0.1694 0.1968
REMARK 3 3 3.2339 - 2.8257 0.99 2528 154 0.1807 0.2055
REMARK 3 4 2.8257 - 2.5677 1.00 2539 153 0.1868 0.1973
REMARK 3 5 2.5677 - 2.3838 1.00 2521 154 0.1866 0.2067
REMARK 3 6 2.3838 - 2.2433 0.77 1951 119 0.1760 0.2071
REMARK 3 7 2.2433 - 2.1310 0.75 1902 118 0.1867 0.2181
REMARK 3 8 2.1310 - 2.0383 0.99 2537 154 0.1846 0.2081
REMARK 3 9 2.0383 - 1.9599 0.99 2462 150 0.1823 0.2040
REMARK 3 10 1.9599 - 1.8923 0.88 2222 133 0.1991 0.2277
REMARK 3 11 1.8923 - 1.8331 0.95 2390 147 0.1935 0.2327
REMARK 3 12 1.8331 - 1.7807 0.98 2458 150 0.1876 0.2171
REMARK 3 13 1.7807 - 1.7339 0.97 2463 149 0.2031 0.2087
REMARK 3 14 1.7339 - 1.6916 0.94 2360 144 0.2252 0.2560
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.090
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2710
REMARK 3 ANGLE : 0.884 3649
REMARK 3 CHIRALITY : 0.045 345
REMARK 3 PLANARITY : 0.005 455
REMARK 3 DIHEDRAL : 11.513 1556
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 17
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 794 THROUGH 809 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.4008 1.0255 -10.9074
REMARK 3 T TENSOR
REMARK 3 T11: 0.4266 T22: 0.7226
REMARK 3 T33: 0.5952 T12: 0.1193
REMARK 3 T13: -0.0379 T23: -0.2718
REMARK 3 L TENSOR
REMARK 3 L11: 6.6932 L22: 1.4977
REMARK 3 L33: 0.5678 L12: -2.5081
REMARK 3 L13: -1.6078 L23: 0.9214
REMARK 3 S TENSOR
REMARK 3 S11: 0.3113 S12: 1.3683 S13: -0.5966
REMARK 3 S21: 0.2594 S22: 0.5743 S23: -0.9006
REMARK 3 S31: 0.2450 S32: 0.6463 S33: 0.3614
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 810 THROUGH 847 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.7140 9.7165 -3.1509
REMARK 3 T TENSOR
REMARK 3 T11: 0.1650 T22: 0.2438
REMARK 3 T33: 0.1997 T12: 0.0034
REMARK 3 T13: -0.0098 T23: 0.0476
REMARK 3 L TENSOR
REMARK 3 L11: 3.6200 L22: 3.8932
REMARK 3 L33: 4.4361 L12: 0.7829
REMARK 3 L13: 2.2358 L23: 1.4033
REMARK 3 S TENSOR
REMARK 3 S11: 0.0041 S12: 0.2218 S13: 0.0741
REMARK 3 S21: 0.2765 S22: -0.0316 S23: -0.3841
REMARK 3 S31: 0.0666 S32: 0.5373 S33: 0.0861
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 848 THROUGH 871 )
REMARK 3 ORIGIN FOR THE GROUP (A): 0.0634 9.0836 -0.6704
REMARK 3 T TENSOR
REMARK 3 T11: 0.1674 T22: 0.1354
REMARK 3 T33: 0.1256 T12: -0.0056
REMARK 3 T13: -0.0040 T23: -0.0050
REMARK 3 L TENSOR
REMARK 3 L11: 2.7726 L22: 5.6368
REMARK 3 L33: 3.7001 L12: 0.4831
REMARK 3 L13: 0.5026 L23: -0.7329
REMARK 3 S TENSOR
REMARK 3 S11: 0.0266 S12: -0.0649 S13: 0.0619
REMARK 3 S21: 0.2923 S22: -0.0588 S23: -0.0505
REMARK 3 S31: 0.0449 S32: -0.0207 S33: 0.0186
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 872 THROUGH 887 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.3893 6.9654 -10.8925
REMARK 3 T TENSOR
REMARK 3 T11: 0.1347 T22: 0.1449
REMARK 3 T33: 0.1275 T12: 0.0280
REMARK 3 T13: -0.0085 T23: 0.0062
REMARK 3 L TENSOR
REMARK 3 L11: 6.2995 L22: 7.5981
REMARK 3 L33: 6.7752 L12: 2.9262
REMARK 3 L13: 1.3190 L23: 3.0007
REMARK 3 S TENSOR
REMARK 3 S11: 0.1102 S12: 0.2205 S13: -0.2371
REMARK 3 S21: -0.2549 S22: -0.0695 S23: -0.1117
REMARK 3 S31: 0.1833 S32: 0.0105 S33: -0.0210
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 888 THROUGH 906 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.9995 6.5203 -5.1178
REMARK 3 T TENSOR
REMARK 3 T11: 0.1709 T22: 0.2589
REMARK 3 T33: 0.1854 T12: -0.0231
REMARK 3 T13: 0.0048 T23: 0.0205
REMARK 3 L TENSOR
REMARK 3 L11: 4.7704 L22: 2.4092
REMARK 3 L33: 2.4962 L12: -1.1048
REMARK 3 L13: 1.4890 L23: -2.4368
REMARK 3 S TENSOR
REMARK 3 S11: 0.1226 S12: -0.3531 S13: -0.2810
REMARK 3 S21: 0.1212 S22: 0.0920 S23: 0.3198
REMARK 3 S31: 0.0273 S32: -0.2730 S33: -0.2233
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 922 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.3973 11.0043 -14.8739
REMARK 3 T TENSOR
REMARK 3 T11: 0.1481 T22: 0.1954
REMARK 3 T33: 0.1691 T12: 0.0051
REMARK 3 T13: -0.0039 T23: 0.0178
REMARK 3 L TENSOR
REMARK 3 L11: 3.6477 L22: 4.4865
REMARK 3 L33: 5.3424 L12: 2.6302
REMARK 3 L13: 1.4825 L23: 3.7362
REMARK 3 S TENSOR
REMARK 3 S11: -0.0537 S12: 0.2952 S13: -0.1145
REMARK 3 S21: -0.3985 S22: 0.0964 S23: -0.0062
REMARK 3 S31: 0.0512 S32: -0.1499 S33: -0.0069
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 923 THROUGH 941 )
REMARK 3 ORIGIN FOR THE GROUP (A): -20.2403 6.8703 -11.3202
REMARK 3 T TENSOR
REMARK 3 T11: 0.2278 T22: 0.4344
REMARK 3 T33: 0.3960 T12: -0.0564
REMARK 3 T13: -0.0109 T23: 0.0599
REMARK 3 L TENSOR
REMARK 3 L11: 8.7053 L22: 3.3231
REMARK 3 L33: 7.7364 L12: -3.0137
REMARK 3 L13: -2.5237 L23: 3.4962
REMARK 3 S TENSOR
REMARK 3 S11: -0.0918 S12: 0.1492 S13: 0.1207
REMARK 3 S21: -0.1492 S22: 0.0508 S23: 0.8036
REMARK 3 S31: 0.2019 S32: -0.5434 S33: -0.0048
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 794 THROUGH 803 )
REMARK 3 ORIGIN FOR THE GROUP (A): -23.5974 20.6290 -29.0533
REMARK 3 T TENSOR
REMARK 3 T11: 0.4296 T22: 0.5649
REMARK 3 T33: 0.6446 T12: 0.0058
REMARK 3 T13: -0.0357 T23: -0.0114
REMARK 3 L TENSOR
REMARK 3 L11: 8.7675 L22: 3.0388
REMARK 3 L33: 3.5711 L12: 0.4989
REMARK 3 L13: 5.0047 L23: 1.7422
REMARK 3 S TENSOR
REMARK 3 S11: 0.2139 S12: 0.2974 S13: -1.4995
REMARK 3 S21: -0.1797 S22: -0.5815 S23: 1.1454
REMARK 3 S31: 0.2377 S32: -1.3855 S33: 0.4450
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 804 THROUGH 809 )
REMARK 3 ORIGIN FOR THE GROUP (A): -18.6426 22.3191 -37.4961
REMARK 3 T TENSOR
REMARK 3 T11: 0.6629 T22: 0.5250
REMARK 3 T33: 0.3125 T12: 0.1528
REMARK 3 T13: -0.1093 T23: -0.0036
REMARK 3 L TENSOR
REMARK 3 L11: 6.1922 L22: 3.2085
REMARK 3 L33: 5.9118 L12: -0.8799
REMARK 3 L13: 1.0620 L23: 4.0523
REMARK 3 S TENSOR
REMARK 3 S11: 0.7416 S12: 1.3714 S13: -0.4491
REMARK 3 S21: -1.6674 S22: -0.7982 S23: 0.1577
REMARK 3 S31: 0.8447 S32: 0.3600 S33: 0.0406
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 810 THROUGH 827 )
REMARK 3 ORIGIN FOR THE GROUP (A): -20.5296 32.8806 -22.7735
REMARK 3 T TENSOR
REMARK 3 T11: 0.3653 T22: 0.3104
REMARK 3 T33: 0.3754 T12: 0.1081
REMARK 3 T13: -0.0572 T23: 0.0356
REMARK 3 L TENSOR
REMARK 3 L11: 4.7202 L22: 2.8894
REMARK 3 L33: 8.1502 L12: -0.2271
REMARK 3 L13: 1.9893 L23: 2.7343
REMARK 3 S TENSOR
REMARK 3 S11: -0.1843 S12: -0.0148 S13: 0.5053
REMARK 3 S21: -0.1699 S22: -0.0519 S23: 0.2615
REMARK 3 S31: -0.8550 S32: -0.6217 S33: 0.2389
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 828 THROUGH 847 )
REMARK 3 ORIGIN FOR THE GROUP (A): -13.1201 25.4969 -21.8085
REMARK 3 T TENSOR
REMARK 3 T11: 0.2397 T22: 0.1950
REMARK 3 T33: 0.2115 T12: 0.0200
REMARK 3 T13: -0.0726 T23: 0.0195
REMARK 3 L TENSOR
REMARK 3 L11: 6.3686 L22: 3.5036
REMARK 3 L33: 3.4203 L12: -2.8948
REMARK 3 L13: -3.4473 L23: 1.4771
REMARK 3 S TENSOR
REMARK 3 S11: -0.0746 S12: 0.1372 S13: 0.2526
REMARK 3 S21: 0.0257 S22: 0.0910 S23: -0.0226
REMARK 3 S31: 0.0592 S32: -0.0833 S33: -0.0056
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 848 THROUGH 887 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.9356 27.4116 -23.0485
REMARK 3 T TENSOR
REMARK 3 T11: 0.2157 T22: 0.2463
REMARK 3 T33: 0.2625 T12: -0.0294
REMARK 3 T13: -0.0227 T23: 0.0834
REMARK 3 L TENSOR
REMARK 3 L11: 2.7410 L22: 3.0683
REMARK 3 L33: 5.6169 L12: -0.3213
REMARK 3 L13: 0.4378 L23: 0.0701
REMARK 3 S TENSOR
REMARK 3 S11: -0.0429 S12: 0.3191 S13: 0.4619
REMARK 3 S21: -0.1184 S22: 0.0110 S23: -0.0726
REMARK 3 S31: -0.3253 S32: 0.2432 S33: 0.0217
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 888 THROUGH 906 )
REMARK 3 ORIGIN FOR THE GROUP (A): 6.0614 27.8969 -24.4426
REMARK 3 T TENSOR
REMARK 3 T11: 0.2811 T22: 0.5365
REMARK 3 T33: 0.3515 T12: -0.0788
REMARK 3 T13: -0.0066 T23: 0.2195
REMARK 3 L TENSOR
REMARK 3 L11: 0.3696 L22: 2.0918
REMARK 3 L33: 1.5906 L12: -0.0663
REMARK 3 L13: -0.6348 L23: -0.9023
REMARK 3 S TENSOR
REMARK 3 S11: -0.0425 S12: 0.7032 S13: 0.4765
REMARK 3 S21: -0.1004 S22: -0.2015 S23: -0.2484
REMARK 3 S31: -0.4395 S32: 0.2106 S33: -0.1659
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 907 THROUGH 922 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.8354 17.6329 -20.9875
REMARK 3 T TENSOR
REMARK 3 T11: 0.1718 T22: 0.3291
REMARK 3 T33: 0.2156 T12: 0.0401
REMARK 3 T13: 0.0200 T23: 0.0655
REMARK 3 L TENSOR
REMARK 3 L11: 4.9766 L22: 5.9209
REMARK 3 L33: 5.2993 L12: 0.9121
REMARK 3 L13: -1.1183 L23: 2.6519
REMARK 3 S TENSOR
REMARK 3 S11: 0.0575 S12: 0.7231 S13: -0.1213
REMARK 3 S21: -0.0793 S22: -0.0903 S23: -0.4887
REMARK 3 S31: 0.4260 S32: 0.2636 S33: 0.0284
REMARK 3 TLS GROUP : 15
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 923 THROUGH 931 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.7539 22.7842 -30.1745
REMARK 3 T TENSOR
REMARK 3 T11: 0.5531 T22: 0.9122
REMARK 3 T33: 0.5157 T12: 0.1292
REMARK 3 T13: 0.1969 T23: 0.2142
REMARK 3 L TENSOR
REMARK 3 L11: 7.1946 L22: 8.2324
REMARK 3 L33: 2.3667 L12: 6.3106
REMARK 3 L13: 4.1258 L23: 3.5833
REMARK 3 S TENSOR
REMARK 3 S11: -0.0522 S12: 1.3723 S13: 0.5953
REMARK 3 S21: -0.3835 S22: -0.3399 S23: -0.1203
REMARK 3 S31: 0.5309 S32: 0.7896 S33: 0.3985
REMARK 3 TLS GROUP : 16
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 932 THROUGH 940 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.9475 22.8223 -18.5757
REMARK 3 T TENSOR
REMARK 3 T11: 0.2768 T22: 0.7997
REMARK 3 T33: 0.5037 T12: -0.1216
REMARK 3 T13: 0.0329 T23: 0.2233
REMARK 3 L TENSOR
REMARK 3 L11: 1.5458 L22: 1.2835
REMARK 3 L33: 0.6768 L12: -0.1710
REMARK 3 L13: -0.8673 L23: -0.0327
REMARK 3 S TENSOR
REMARK 3 S11: 0.0280 S12: -0.1961 S13: -0.0397
REMARK 3 S21: -0.0268 S22: -0.1611 S23: -0.4912
REMARK 3 S31: 0.0115 S32: 0.2737 S33: -0.1387
REMARK 3 TLS GROUP : 17
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 941 THROUGH 944 )
REMARK 3 ORIGIN FOR THE GROUP (A): 14.7960 10.2914 -16.4278
REMARK 3 T TENSOR
REMARK 3 T11: 0.4026 T22: 0.8373
REMARK 3 T33: 1.3807 T12: -0.1397
REMARK 3 T13: -0.0085 T23: -0.0575
REMARK 3 L TENSOR
REMARK 3 L11: 3.2286 L22: 0.2871
REMARK 3 L33: 0.9532 L12: -0.7861
REMARK 3 L13: 0.2029 L23: -0.3494
REMARK 3 S TENSOR
REMARK 3 S11: 0.1454 S12: 0.0179 S13: 0.3241
REMARK 3 S21: -0.2040 S22: 0.3164 S23: -0.4826
REMARK 3 S31: -0.4210 S32: 1.2726 S33: -0.3477
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5V87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17.
REMARK 100 THE DEPOSITION ID IS D_1000227003.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-JAN-17
REMARK 200 TEMPERATURE (KELVIN) : 90
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34328
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2
REMARK 200 DATA REDUNDANCY : 3.400
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575
REMARK 200 STARTING MODEL: 5C0V
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.39
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CACODYLATE TRIHYDRATE PH
REMARK 280 6.5, 30% W/V POLYETHYLENE GLYCOL 4,000 (#25 INDEX-116), VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.98100
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 785
REMARK 465 HIS A 786
REMARK 465 SER A 787
REMARK 465 GLY A 788
REMARK 465 GLY A 789
REMARK 465 GLY A 790
REMARK 465 GLY A 791
REMARK 465 GLY A 792
REMARK 465 GLY A 793
REMARK 465 ASN A 806
REMARK 465 ARG A 942
REMARK 465 ARG A 943
REMARK 465 LEU A 944
REMARK 465 GLU A 945
REMARK 465 ASP A 946
REMARK 465 GLY B 785
REMARK 465 HIS B 786
REMARK 465 SER B 787
REMARK 465 GLY B 788
REMARK 465 GLY B 789
REMARK 465 GLY B 790
REMARK 465 GLY B 791
REMARK 465 GLY B 792
REMARK 465 GLY B 793
REMARK 465 LYS B 926
REMARK 465 ASN B 927
REMARK 465 ARG B 942
REMARK 465 GLU B 945
REMARK 465 ASP B 946
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 804 CG CD CE NZ
REMARK 470 GLU A 805 CG CD OE1 OE2
REMARK 470 GLN A 810 CG CD OE1 NE2
REMARK 470 HIS A 811 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A 825 CG CD CE NZ
REMARK 470 LYS A 921 CG CD CE NZ
REMARK 470 LYS A 940 CG CD CE NZ
REMARK 470 LYS B 887 CG CD CE NZ
REMARK 470 LYS B 888 CG CD CE NZ
REMARK 470 LYS B 924 CG CD CE NZ
REMARK 470 LYS B 940 CG CD CE NZ
REMARK 470 PHE B 941 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG B 943 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 1201 O HOH A 1231 2545 1.87
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MGT A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 91P B 1001
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5V7C RELATED DB: PDB
DBREF 5V87 A 796 946 UNP Q6PKG0 LARP1_HUMAN 873 1023
DBREF 5V87 B 796 946 UNP Q6PKG0 LARP1_HUMAN 873 1023
SEQADV 5V87 GLY A 785 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 HIS A 786 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 SER A 787 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 788 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 789 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 790 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 791 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 792 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY A 793 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 HIS A 794 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 MET A 795 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 785 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 HIS B 786 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 SER B 787 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 788 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 789 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 790 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 791 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 792 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 GLY B 793 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 HIS B 794 UNP Q6PKG0 EXPRESSION TAG
SEQADV 5V87 MET B 795 UNP Q6PKG0 EXPRESSION TAG
SEQRES 1 A 162 GLY HIS SER GLY GLY GLY GLY GLY GLY HIS MET GLN HIS
SEQRES 2 A 162 PRO SER HIS GLU LEU LEU LYS GLU ASN GLY PHE THR GLN
SEQRES 3 A 162 HIS VAL TYR HIS LYS TYR ARG ARG ARG CYS LEU ASN GLU
SEQRES 4 A 162 ARG LYS ARG LEU GLY ILE GLY GLN SER GLN GLU MET ASN
SEQRES 5 A 162 THR LEU PHE ARG PHE TRP SER PHE PHE LEU ARG ASP HIS
SEQRES 6 A 162 PHE ASN LYS LYS MET TYR GLU GLU PHE LYS GLN LEU ALA
SEQRES 7 A 162 LEU GLU ASP ALA LYS GLU GLY TYR ARG TYR GLY LEU GLU
SEQRES 8 A 162 CYS LEU PHE ARG TYR TYR SER TYR GLY LEU GLU LYS LYS
SEQRES 9 A 162 PHE ARG LEU ASP ILE PHE LYS ASP PHE GLN GLU GLU THR
SEQRES 10 A 162 VAL LYS ASP TYR GLU ALA GLY GLN LEU TYR GLY LEU GLU
SEQRES 11 A 162 LYS PHE TRP ALA PHE LEU LYS TYR SER LYS ALA LYS ASN
SEQRES 12 A 162 LEU ASP ILE ASP PRO LYS LEU GLN GLU TYR LEU GLY LYS
SEQRES 13 A 162 PHE ARG ARG LEU GLU ASP
SEQRES 1 B 162 GLY HIS SER GLY GLY GLY GLY GLY GLY HIS MET GLN HIS
SEQRES 2 B 162 PRO SER HIS GLU LEU LEU LYS GLU ASN GLY PHE THR GLN
SEQRES 3 B 162 HIS VAL TYR HIS LYS TYR ARG ARG ARG CYS LEU ASN GLU
SEQRES 4 B 162 ARG LYS ARG LEU GLY ILE GLY GLN SER GLN GLU MET ASN
SEQRES 5 B 162 THR LEU PHE ARG PHE TRP SER PHE PHE LEU ARG ASP HIS
SEQRES 6 B 162 PHE ASN LYS LYS MET TYR GLU GLU PHE LYS GLN LEU ALA
SEQRES 7 B 162 LEU GLU ASP ALA LYS GLU GLY TYR ARG TYR GLY LEU GLU
SEQRES 8 B 162 CYS LEU PHE ARG TYR TYR SER TYR GLY LEU GLU LYS LYS
SEQRES 9 B 162 PHE ARG LEU ASP ILE PHE LYS ASP PHE GLN GLU GLU THR
SEQRES 10 B 162 VAL LYS ASP TYR GLU ALA GLY GLN LEU TYR GLY LEU GLU
SEQRES 11 B 162 LYS PHE TRP ALA PHE LEU LYS TYR SER LYS ALA LYS ASN
SEQRES 12 B 162 LEU ASP ILE ASP PRO LYS LEU GLN GLU TYR LEU GLY LYS
SEQRES 13 B 162 PHE ARG ARG LEU GLU ASP
HET MGT A1001 49
HET 91P B1001 76
HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
HETNAM 91P [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-
HETNAM 2 91P OXIDANYLIDENE-1~{H}-PURIN-9-IUM-9-YL)-3,4-
HETNAM 3 91P BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]
HETNAM 4 91P [[(2~{R},3~{S},4~{R},5~{R})-5-(4-AZANYL-2-
HETNAM 5 91P OXIDANYLIDENE-PYRIMIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-
HETNAM 6 91P 2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HYDROGEN PHOSPHATE
HETSYN 91P DINUCLEOTIDE TRIPHOSPHATE CAP ANALOG M7GPPPC
FORMUL 3 MGT C11 H20 N5 O14 P3
FORMUL 4 91P C20 H30 N8 O18 P3 1+
FORMUL 5 HOH *224(H2 O)
HELIX 1 AA1 HIS A 797 LYS A 804 1 8
HELIX 2 AA2 THR A 809 GLY A 828 1 20
HELIX 3 AA3 SER A 832 HIS A 849 1 18
HELIX 4 AA4 ASN A 851 GLY A 869 1 19
HELIX 5 AA5 ARG A 871 LYS A 888 1 18
HELIX 6 AA6 ARG A 890 ALA A 907 1 18
HELIX 7 AA7 LEU A 910 SER A 923 1 14
HELIX 8 AA8 ASP A 931 PHE A 941 1 11
HELIX 9 AA9 HIS B 797 LYS B 804 1 8
HELIX 10 AB1 THR B 809 GLY B 828 1 20
HELIX 11 AB2 SER B 832 HIS B 849 1 18
HELIX 12 AB3 ASN B 851 GLU B 868 1 18
HELIX 13 AB4 ARG B 871 LYS B 888 1 18
HELIX 14 AB5 ARG B 890 ALA B 907 1 18
HELIX 15 AB6 LEU B 910 SER B 923 1 14
HELIX 16 AB7 ASP B 931 GLY B 939 1 9
SITE 1 AC1 11 SER A 882 TYR A 883 GLU A 886 GLU A 914
SITE 2 AC1 11 LYS A 915 ALA A 918 TYR A 922 HOH A1103
SITE 3 AC1 11 HOH A1105 HOH A1126 91P B1001
SITE 1 AC2 18 ARG A 879 TYR A 883 TYR A 911 GLU A 914
SITE 2 AC2 18 LYS A 915 MGT A1001 ARG B 847 ARG B 879
SITE 3 AC2 18 SER B 882 TYR B 883 GLU B 886 GLU B 914
SITE 4 AC2 18 LYS B 915 ALA B 918 TYR B 922 HOH B1106
SITE 5 AC2 18 HOH B1128 HOH B1144
CRYST1 47.959 59.962 60.321 90.00 100.65 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020851 0.000000 0.003922 0.00000
SCALE2 0.000000 0.016677 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016869 0.00000