HEADER OXIDOREDUCTASE 22-MAR-17 5V8Y TITLE MUTANT STRUCTURES OF STREPTOCOCCUS AGALACTIAE GBS GLYCERALDEHYDE-3- TITLE 2 PHOSPHATE DEHYDROGENASE (GAPDH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: GAP, AX245_09885, DX05_09270, EN72_09590, RDF_1710, TH70_1537; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NAD, GAPDH, OXIDOREDUCTASE, GLYCOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,G.C.ULETT,D.CHATTOPADHYAY REVDAT 2 04-OCT-23 5V8Y 1 LINK REVDAT 1 28-FEB-18 5V8Y 0 JRNL AUTH N.SCHORMANN,G.C.ULETT,D.CHATTOPADHYAY JRNL TITL MUTANT STRUCTURES OF STREPTOCOCCUS AGALACTIAE GBS JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (GAPDH) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 52495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6728 - 5.2867 0.99 2970 152 0.1950 0.1914 REMARK 3 2 5.2867 - 4.1985 0.99 2827 141 0.1572 0.1979 REMARK 3 3 4.1985 - 3.6685 0.99 2793 139 0.1647 0.2023 REMARK 3 4 3.6685 - 3.3334 0.99 2734 156 0.1784 0.1823 REMARK 3 5 3.3334 - 3.0946 0.97 2674 168 0.1794 0.1937 REMARK 3 6 3.0946 - 2.9122 0.98 2717 136 0.1896 0.2155 REMARK 3 7 2.9122 - 2.7665 0.97 2685 142 0.2005 0.2159 REMARK 3 8 2.7665 - 2.6461 0.96 2630 149 0.2037 0.2553 REMARK 3 9 2.6461 - 2.5442 0.95 2582 150 0.2064 0.2277 REMARK 3 10 2.5442 - 2.4565 0.94 2559 147 0.2132 0.2439 REMARK 3 11 2.4565 - 2.3797 0.90 2458 148 0.2117 0.2544 REMARK 3 12 2.3797 - 2.3117 0.89 2422 136 0.2037 0.2486 REMARK 3 13 2.3117 - 2.2508 0.87 2366 130 0.2151 0.2574 REMARK 3 14 2.2508 - 2.1959 0.86 2319 125 0.2147 0.2680 REMARK 3 15 2.1959 - 2.1460 0.84 2284 133 0.2198 0.2450 REMARK 3 16 2.1460 - 2.1003 0.82 2205 127 0.2280 0.2711 REMARK 3 17 2.1003 - 2.0583 0.81 2224 106 0.2306 0.2460 REMARK 3 18 2.0583 - 2.0195 0.79 2131 113 0.2464 0.2892 REMARK 3 19 2.0195 - 1.9834 0.78 2118 120 0.2575 0.2976 REMARK 3 20 1.9834 - 1.9498 0.76 2059 120 0.2686 0.3271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5093 REMARK 3 ANGLE : 0.649 6916 REMARK 3 CHIRALITY : 0.051 812 REMARK 3 PLANARITY : 0.005 912 REMARK 3 DIHEDRAL : 2.928 3604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 38.3972 -42.0630 21.0677 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1889 REMARK 3 T33: 0.1014 T12: 0.0214 REMARK 3 T13: 0.0089 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.9949 L22: 1.0375 REMARK 3 L33: 0.2953 L12: -0.6891 REMARK 3 L13: -0.0271 L23: 0.1403 REMARK 3 S TENSOR REMARK 3 S11: 0.1457 S12: 0.2205 S13: -0.0380 REMARK 3 S21: -0.2337 S22: -0.1246 S23: 0.0063 REMARK 3 S31: -0.0415 S32: -0.0561 S33: -0.0154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5JYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MGCL2, 0.1 M MES PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.54050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.54050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.54050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.54050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.54050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.54050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.28300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PHE A 99 REMARK 465 PHE A 100 REMARK 465 ALA A 335 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 520 O HOH B 595 2.17 REMARK 500 O HOH B 566 O HOH B 581 2.19 REMARK 500 O HOH B 471 O HOH B 581 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 47.22 -94.83 REMARK 500 GLU A 104 1.11 -65.73 REMARK 500 THR A 121 51.08 -91.90 REMARK 500 ASP A 127 40.06 -98.25 REMARK 500 ASN A 136 25.72 -144.36 REMARK 500 THR A 145 -60.15 -96.07 REMARK 500 ALA A 150 -169.85 60.81 REMARK 500 GLU A 317 -73.57 -88.01 REMARK 500 PHE B 10 46.83 -99.37 REMARK 500 ASP B 37 122.50 -38.42 REMARK 500 ALA B 76 59.31 -140.21 REMARK 500 THR B 121 53.12 -93.30 REMARK 500 ASN B 136 27.68 -146.31 REMARK 500 ALA B 150 -165.99 61.15 REMARK 500 ALA B 202 109.13 -55.17 REMARK 500 ASN B 268 -164.38 -160.50 REMARK 500 GLU B 317 -75.05 -86.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 721 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 632 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 557 O REMARK 620 2 HOH A 705 O 96.9 REMARK 620 3 HOH A 717 O 96.3 95.5 REMARK 620 4 HOH B 470 O 172.9 89.4 79.9 REMARK 620 5 HOH B 606 O 92.8 90.3 168.5 90.3 REMARK 620 6 HOH B 615 O 87.9 173.8 87.8 86.0 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JYF RELATED DB: PDB REMARK 900 5JYF CONTAINS THE SAME PROTEIN IN APO FORM WITHOUT MUTATION (WILD REMARK 900 TYPE). REMARK 900 RELATED ID: 5UTL RELATED DB: PDB REMARK 900 5UTL CONTAINS THE SAME PROTEIN BUT WITH A DIFFERENT MUTATION. REMARK 900 RELATED ID: 5UTM RELATED DB: PDB REMARK 900 5UTM CONTAINS THE SAME PROTEIN BUT WITH A DIFFERENT MUTATION. REMARK 900 RELATED ID: 5V8X RELATED DB: PDB DBREF 5V8Y A 1 335 UNP Q9ALW2 Q9ALW2_STRAG 1 335 DBREF 5V8Y B 1 335 UNP Q9ALW2 Q9ALW2_STRAG 1 335 SEQADV 5V8Y MET A -19 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY A -18 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER A -17 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER A -16 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -15 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -14 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -13 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -12 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -11 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A -10 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER A -9 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER A -8 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY A -7 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y LEU A -6 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y VAL A -5 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y PRO A -4 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y ARG A -3 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY A -2 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER A -1 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS A 0 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y ILE A 298 UNP Q9ALW2 LYS 298 ENGINEERED MUTATION SEQADV 5V8Y MET B -19 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY B -18 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER B -17 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER B -16 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -15 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -14 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -13 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -12 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -11 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B -10 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER B -9 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER B -8 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY B -7 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y LEU B -6 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y VAL B -5 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y PRO B -4 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y ARG B -3 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y GLY B -2 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y SER B -1 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y HIS B 0 UNP Q9ALW2 EXPRESSION TAG SEQADV 5V8Y ILE B 298 UNP Q9ALW2 LYS 298 ENGINEERED MUTATION SEQRES 1 A 355 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 355 LEU VAL PRO ARG GLY SER HIS MET VAL VAL LYS VAL GLY SEQRES 3 A 355 ILE ASN GLY PHE GLY ARG ILE GLY ARG LEU ALA PHE ARG SEQRES 4 A 355 ARG ILE GLN ASN VAL GLU GLY VAL GLU VAL THR ARG ILE SEQRES 5 A 355 ASN ASP LEU THR ASP PRO ASN MET LEU ALA HIS LEU LEU SEQRES 6 A 355 LYS TYR ASP THR THR GLN GLY ARG PHE ASP GLY THR VAL SEQRES 7 A 355 GLU VAL LYS GLU GLY GLY PHE GLU VAL ASN GLY GLN PHE SEQRES 8 A 355 VAL LYS VAL SER ALA GLU ARG GLU PRO ALA ASN ILE ASP SEQRES 9 A 355 TRP ALA THR ASP GLY VAL GLU ILE VAL LEU GLU ALA THR SEQRES 10 A 355 GLY PHE PHE ALA SER LYS GLU LYS ALA GLU GLN HIS ILE SEQRES 11 A 355 HIS GLU ASN GLY ALA LYS LYS VAL VAL ILE THR ALA PRO SEQRES 12 A 355 GLY GLY ASN ASP VAL LYS THR VAL VAL PHE ASN THR ASN SEQRES 13 A 355 HIS ASP ILE LEU ASP GLY THR GLU THR VAL ILE SER GLY SEQRES 14 A 355 ALA SER CYS THR THR ASN CYS LEU ALA PRO MET ALA LYS SEQRES 15 A 355 ALA LEU GLN ASP ASN PHE GLY VAL LYS GLN GLY LEU MET SEQRES 16 A 355 THR THR ILE HIS ALA TYR THR GLY ASP GLN MET ILE LEU SEQRES 17 A 355 ASP GLY PRO HIS ARG GLY GLY ASP LEU ARG ARG ALA ARG SEQRES 18 A 355 ALA GLY ALA ALA ASN ILE VAL PRO ASN SER THR GLY ALA SEQRES 19 A 355 ALA LYS ALA ILE GLY LEU VAL ILE PRO GLU LEU ASN GLY SEQRES 20 A 355 LYS LEU ASP GLY ALA ALA GLN ARG VAL PRO VAL PRO THR SEQRES 21 A 355 GLY SER VAL THR GLU LEU VAL ALA THR LEU GLU LYS ASP SEQRES 22 A 355 VAL THR VAL GLU GLU VAL ASN ALA ALA MET LYS ALA ALA SEQRES 23 A 355 ALA ASN ASP SER TYR GLY TYR THR GLU ASP PRO ILE VAL SEQRES 24 A 355 SER SER ASP ILE VAL GLY ILE SER TYR GLY SER LEU PHE SEQRES 25 A 355 ASP ALA THR GLN THR ILE VAL GLN THR VAL ASP GLY ASN SEQRES 26 A 355 GLN LEU VAL LYS VAL VAL SER TRP TYR ASP ASN GLU MET SEQRES 27 A 355 SER TYR THR SER GLN LEU VAL ARG THR LEU GLU TYR PHE SEQRES 28 A 355 ALA LYS ILE ALA SEQRES 1 B 355 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 355 LEU VAL PRO ARG GLY SER HIS MET VAL VAL LYS VAL GLY SEQRES 3 B 355 ILE ASN GLY PHE GLY ARG ILE GLY ARG LEU ALA PHE ARG SEQRES 4 B 355 ARG ILE GLN ASN VAL GLU GLY VAL GLU VAL THR ARG ILE SEQRES 5 B 355 ASN ASP LEU THR ASP PRO ASN MET LEU ALA HIS LEU LEU SEQRES 6 B 355 LYS TYR ASP THR THR GLN GLY ARG PHE ASP GLY THR VAL SEQRES 7 B 355 GLU VAL LYS GLU GLY GLY PHE GLU VAL ASN GLY GLN PHE SEQRES 8 B 355 VAL LYS VAL SER ALA GLU ARG GLU PRO ALA ASN ILE ASP SEQRES 9 B 355 TRP ALA THR ASP GLY VAL GLU ILE VAL LEU GLU ALA THR SEQRES 10 B 355 GLY PHE PHE ALA SER LYS GLU LYS ALA GLU GLN HIS ILE SEQRES 11 B 355 HIS GLU ASN GLY ALA LYS LYS VAL VAL ILE THR ALA PRO SEQRES 12 B 355 GLY GLY ASN ASP VAL LYS THR VAL VAL PHE ASN THR ASN SEQRES 13 B 355 HIS ASP ILE LEU ASP GLY THR GLU THR VAL ILE SER GLY SEQRES 14 B 355 ALA SER CYS THR THR ASN CYS LEU ALA PRO MET ALA LYS SEQRES 15 B 355 ALA LEU GLN ASP ASN PHE GLY VAL LYS GLN GLY LEU MET SEQRES 16 B 355 THR THR ILE HIS ALA TYR THR GLY ASP GLN MET ILE LEU SEQRES 17 B 355 ASP GLY PRO HIS ARG GLY GLY ASP LEU ARG ARG ALA ARG SEQRES 18 B 355 ALA GLY ALA ALA ASN ILE VAL PRO ASN SER THR GLY ALA SEQRES 19 B 355 ALA LYS ALA ILE GLY LEU VAL ILE PRO GLU LEU ASN GLY SEQRES 20 B 355 LYS LEU ASP GLY ALA ALA GLN ARG VAL PRO VAL PRO THR SEQRES 21 B 355 GLY SER VAL THR GLU LEU VAL ALA THR LEU GLU LYS ASP SEQRES 22 B 355 VAL THR VAL GLU GLU VAL ASN ALA ALA MET LYS ALA ALA SEQRES 23 B 355 ALA ASN ASP SER TYR GLY TYR THR GLU ASP PRO ILE VAL SEQRES 24 B 355 SER SER ASP ILE VAL GLY ILE SER TYR GLY SER LEU PHE SEQRES 25 B 355 ASP ALA THR GLN THR ILE VAL GLN THR VAL ASP GLY ASN SEQRES 26 B 355 GLN LEU VAL LYS VAL VAL SER TRP TYR ASP ASN GLU MET SEQRES 27 B 355 SER TYR THR SER GLN LEU VAL ARG THR LEU GLU TYR PHE SEQRES 28 B 355 ALA LYS ILE ALA HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *453(H2 O) HELIX 1 AA1 GLY A 11 GLN A 22 1 12 HELIX 2 AA2 ASP A 37 TYR A 47 1 11 HELIX 3 AA3 GLU A 79 ILE A 83 5 5 HELIX 4 AA4 ASP A 84 GLY A 89 5 6 HELIX 5 AA5 LYS A 103 ILE A 110 5 8 HELIX 6 AA6 ASN A 136 LEU A 140 5 5 HELIX 7 AA7 SER A 151 PHE A 168 1 18 HELIX 8 AA8 ALA A 217 VAL A 221 5 5 HELIX 9 AA9 ILE A 222 ASN A 226 5 5 HELIX 10 AB1 THR A 255 ALA A 266 1 12 HELIX 11 AB2 VAL A 279 VAL A 284 5 6 HELIX 12 AB3 THR A 295 THR A 297 5 3 HELIX 13 AB4 GLU A 317 ILE A 334 1 18 HELIX 14 AB5 GLY B 11 GLN B 22 1 12 HELIX 15 AB6 ASP B 37 LYS B 46 1 10 HELIX 16 AB7 GLU B 79 ILE B 83 5 5 HELIX 17 AB8 ASP B 84 GLY B 89 5 6 HELIX 18 AB9 SER B 102 GLU B 107 1 6 HELIX 19 AC1 GLN B 108 ILE B 110 5 3 HELIX 20 AC2 ASN B 136 LEU B 140 5 5 HELIX 21 AC3 SER B 151 GLY B 169 1 19 HELIX 22 AC4 ALA B 217 VAL B 221 5 5 HELIX 23 AC5 ILE B 222 ASN B 226 5 5 HELIX 24 AC6 THR B 255 ALA B 266 1 12 HELIX 25 AC7 VAL B 279 VAL B 284 5 6 HELIX 26 AC8 THR B 295 THR B 297 5 3 HELIX 27 AC9 GLU B 317 ILE B 334 1 18 SHEET 1 AA1 8 VAL A 58 LYS A 61 0 SHEET 2 AA1 8 GLY A 64 VAL A 67 -1 O GLU A 66 N GLU A 59 SHEET 3 AA1 8 GLN A 70 SER A 75 -1 O GLN A 70 N VAL A 67 SHEET 4 AA1 8 GLU A 28 ASN A 33 1 N ILE A 32 O LYS A 73 SHEET 5 AA1 8 LYS A 4 ASN A 8 1 N VAL A 5 O GLU A 28 SHEET 6 AA1 8 ILE A 92 GLU A 95 1 O LEU A 94 N GLY A 6 SHEET 7 AA1 8 LYS A 117 ILE A 120 1 O VAL A 119 N VAL A 93 SHEET 8 AA1 8 VAL A 146 SER A 148 1 O ILE A 147 N ILE A 120 SHEET 1 AA2 7 VAL A 208 SER A 211 0 SHEET 2 AA2 7 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA2 7 VAL A 170 ALA A 180 1 N THR A 177 O GLN A 234 SHEET 4 AA2 7 SER A 242 LEU A 250 -1 O GLU A 245 N THR A 176 SHEET 5 AA2 7 ASN A 305 TYR A 314 -1 O SER A 312 N THR A 244 SHEET 6 AA2 7 SER A 290 ASP A 293 -1 N LEU A 291 O TRP A 313 SHEET 7 AA2 7 TYR A 271 THR A 274 1 N GLY A 272 O SER A 290 SHEET 1 AA3 6 VAL A 208 SER A 211 0 SHEET 2 AA3 6 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA3 6 VAL A 170 ALA A 180 1 N THR A 177 O GLN A 234 SHEET 4 AA3 6 SER A 242 LEU A 250 -1 O GLU A 245 N THR A 176 SHEET 5 AA3 6 ASN A 305 TYR A 314 -1 O SER A 312 N THR A 244 SHEET 6 AA3 6 ILE A 298 VAL A 302 -1 N ILE A 298 O LYS A 309 SHEET 1 AA4 9 VAL B 58 LYS B 61 0 SHEET 2 AA4 9 GLY B 64 VAL B 67 -1 O GLY B 64 N LYS B 61 SHEET 3 AA4 9 GLN B 70 SER B 75 -1 O VAL B 72 N PHE B 65 SHEET 4 AA4 9 VAL B 27 ASN B 33 1 N ILE B 32 O LYS B 73 SHEET 5 AA4 9 VAL B 3 ASN B 8 1 N VAL B 5 O GLU B 28 SHEET 6 AA4 9 ILE B 92 GLU B 95 1 O LEU B 94 N GLY B 6 SHEET 7 AA4 9 LYS B 117 ILE B 120 1 O VAL B 119 N GLU B 95 SHEET 8 AA4 9 VAL B 146 SER B 148 1 O ILE B 147 N ILE B 120 SHEET 9 AA4 9 LYS B 129 THR B 130 1 N LYS B 129 O SER B 148 SHEET 1 AA5 2 TYR B 47 ASP B 48 0 SHEET 2 AA5 2 GLY B 52 ARG B 53 -1 O GLY B 52 N ASP B 48 SHEET 1 AA6 7 VAL B 208 SER B 211 0 SHEET 2 AA6 7 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA6 7 VAL B 170 ALA B 180 1 N HIS B 179 O VAL B 236 SHEET 4 AA6 7 SER B 242 LEU B 250 -1 O GLU B 245 N THR B 176 SHEET 5 AA6 7 ASN B 305 TYR B 314 -1 O SER B 312 N THR B 244 SHEET 6 AA6 7 SER B 290 ASP B 293 -1 N LEU B 291 O TRP B 313 SHEET 7 AA6 7 TYR B 271 THR B 274 1 N GLY B 272 O SER B 290 SHEET 1 AA7 6 VAL B 208 SER B 211 0 SHEET 2 AA7 6 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA7 6 VAL B 170 ALA B 180 1 N HIS B 179 O VAL B 236 SHEET 4 AA7 6 SER B 242 LEU B 250 -1 O GLU B 245 N THR B 176 SHEET 5 AA7 6 ASN B 305 TYR B 314 -1 O SER B 312 N THR B 244 SHEET 6 AA7 6 ILE B 298 VAL B 302 -1 N GLN B 300 O LEU B 307 LINK MG MG A 401 O HOH A 557 1555 1555 2.29 LINK MG MG A 401 O HOH A 705 1555 1555 2.18 LINK MG MG A 401 O HOH A 717 1555 1555 2.28 LINK MG MG A 401 O HOH B 470 1555 1555 2.26 LINK MG MG A 401 O HOH B 606 1555 1555 2.14 LINK MG MG A 401 O HOH B 615 1555 1555 2.18 SITE 1 AC1 6 HOH A 557 HOH A 705 HOH A 717 HOH B 470 SITE 2 AC1 6 HOH B 606 HOH B 615 CRYST1 147.081 147.081 72.283 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013835 0.00000