HEADER LYASE 23-MAR-17 5V9F TITLE STRUCTURE OF THE H477R VARIANT OF RAT CYTOSOLIC PEPCK IN COMPLEX WITH TITLE 2 BETA SULFOPYRUVATE AND GTP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC [GTP]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK-C; COMPND 5 EC: 4.1.1.32; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOENOLPYRUVATE CARBOXYKINASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HOLYOAK,D.S.CUI REVDAT 6 04-OCT-23 5V9F 1 LINK REVDAT 5 08-JAN-20 5V9F 1 REMARK REVDAT 4 27-SEP-17 5V9F 1 REMARK REVDAT 3 20-SEP-17 5V9F 1 REMARK REVDAT 2 26-APR-17 5V9F 1 JRNL REVDAT 1 12-APR-17 5V9F 0 JRNL AUTH D.S.CUI,A.BROOM,M.J.MCLEOD,E.M.MEIERING,T.HOLYOAK JRNL TITL ASYMMETRIC ANCHORING IS REQUIRED FOR EFFICIENT OMEGA-LOOP JRNL TITL 2 OPENING AND CLOSING IN CYTOSOLIC PHOSPHOENOLPYRUVATE JRNL TITL 3 CARBOXYKINASE. JRNL REF BIOCHEMISTRY V. 56 2106 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28345895 JRNL DOI 10.1021/ACS.BIOCHEM.7B00178 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.22000 REMARK 3 B22 (A**2) : -4.49000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.280 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5V9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39151 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DT7 REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 - 34% PEG 3350 AND 100MM HEPES, AT REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.75300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 465 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 465 LYS A 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 -105.08 -120.96 REMARK 500 ARG A 129 -59.68 -126.94 REMARK 500 LYS A 243 -81.64 -77.11 REMARK 500 TRP A 260 -169.28 -124.37 REMARK 500 ASP A 311 -47.49 -149.16 REMARK 500 PHE A 333 70.88 -110.00 REMARK 500 ASN A 344 77.65 -164.40 REMARK 500 PHE A 480 18.65 58.37 REMARK 500 PHE A 530 -123.99 50.90 REMARK 500 ASP A 548 59.94 -91.54 REMARK 500 ASP A 571 65.29 -101.81 REMARK 500 ASN A 601 -111.97 44.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 706 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE2 REMARK 620 2 HIS A 502 NE2 61.3 REMARK 620 3 GLU A 607 OE2 60.4 4.3 REMARK 620 4 HOH A 839 O 69.8 129.5 129.5 REMARK 620 5 HOH A 951 O 136.0 74.9 75.7 153.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 208 O REMARK 620 2 HOH A 895 O 142.4 REMARK 620 3 HOH A 940 O 69.4 77.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 NZ REMARK 620 2 HIS A 264 NE2 87.8 REMARK 620 3 ASP A 311 OD1 92.8 96.2 REMARK 620 4 GTP A 704 O1G 179.2 92.6 87.8 REMARK 620 5 SPV A 705 O1 90.0 95.1 168.4 89.3 REMARK 620 6 SPV A 705 O2 85.0 166.7 95.3 94.4 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 291 OG1 REMARK 620 2 GTP A 704 O2G 172.5 REMARK 620 3 GTP A 704 O1B 85.8 87.8 REMARK 620 4 HOH A 805 O 89.0 97.7 173.1 REMARK 620 5 HOH A 810 O 97.0 87.6 96.9 79.3 REMARK 620 6 HOH A 849 O 81.7 93.4 80.7 103.0 177.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPV A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V95 RELATED DB: PDB REMARK 900 SAME ENZYME VARIANT IN DIFFERENTLY LIGATED STATE REMARK 900 RELATED ID: 5V97 RELATED DB: PDB REMARK 900 SAME ENZYME VARIANT IN DIFFERENTLY LIGATED STATE REMARK 900 RELATED ID: 5V9H RELATED DB: PDB REMARK 900 RELATED ID: 5V9G RELATED DB: PDB DBREF 5V9F A 1 622 UNP P07379 PCKGC_RAT 1 622 SEQADV 5V9F ARG A 477 UNP P07379 HIS 477 ENGINEERED MUTATION SEQRES 1 A 622 MET PRO PRO GLN LEU HIS ASN GLY LEU ASP PHE SER ALA SEQRES 2 A 622 LYS VAL ILE GLN GLY SER LEU ASP SER LEU PRO GLN GLU SEQRES 3 A 622 VAL ARG LYS PHE VAL GLU GLY ASN ALA GLN LEU CYS GLN SEQRES 4 A 622 PRO GLU TYR ILE HIS ILE CYS ASP GLY SER GLU GLU GLU SEQRES 5 A 622 TYR GLY ARG LEU LEU ALA HIS MET GLN GLU GLU GLY VAL SEQRES 6 A 622 ILE ARG LYS LEU LYS LYS TYR ASP ASN CYS TRP LEU ALA SEQRES 7 A 622 LEU THR ASP PRO ARG ASP VAL ALA ARG ILE GLU SER LYS SEQRES 8 A 622 THR VAL ILE ILE THR GLN GLU GLN ARG ASP THR VAL PRO SEQRES 9 A 622 ILE PRO LYS SER GLY GLN SER GLN LEU GLY ARG TRP MET SEQRES 10 A 622 SER GLU GLU ASP PHE GLU LYS ALA PHE ASN ALA ARG PHE SEQRES 11 A 622 PRO GLY CYS MET LYS GLY ARG THR MET TYR VAL ILE PRO SEQRES 12 A 622 PHE SER MET GLY PRO LEU GLY SER PRO LEU ALA LYS ILE SEQRES 13 A 622 GLY ILE GLU LEU THR ASP SER PRO TYR VAL VAL ALA SER SEQRES 14 A 622 MET ARG ILE MET THR ARG MET GLY THR SER VAL LEU GLU SEQRES 15 A 622 ALA LEU GLY ASP GLY GLU PHE ILE LYS CYS LEU HIS SER SEQRES 16 A 622 VAL GLY CYS PRO LEU PRO LEU LYS LYS PRO LEU VAL ASN SEQRES 17 A 622 ASN TRP ALA CYS ASN PRO GLU LEU THR LEU ILE ALA HIS SEQRES 18 A 622 LEU PRO ASP ARG ARG GLU ILE ILE SER PHE GLY SER GLY SEQRES 19 A 622 TYR GLY GLY ASN SER LEU LEU GLY LYS LYS CYS PHE ALA SEQRES 20 A 622 LEU ARG ILE ALA SER ARG LEU ALA LYS GLU GLU GLY TRP SEQRES 21 A 622 LEU ALA GLU HIS MET LEU ILE LEU GLY ILE THR ASN PRO SEQRES 22 A 622 GLU GLY LYS LYS LYS TYR LEU ALA ALA ALA PHE PRO SER SEQRES 23 A 622 ALA CYS GLY LYS THR ASN LEU ALA MET MET ASN PRO THR SEQRES 24 A 622 LEU PRO GLY TRP LYS VAL GLU CYS VAL GLY ASP ASP ILE SEQRES 25 A 622 ALA TRP MET LYS PHE ASP ALA GLN GLY ASN LEU ARG ALA SEQRES 26 A 622 ILE ASN PRO GLU ASN GLY PHE PHE GLY VAL ALA PRO GLY SEQRES 27 A 622 THR SER VAL LYS THR ASN PRO ASN ALA ILE LYS THR ILE SEQRES 28 A 622 GLN LYS ASN THR ILE PHE THR ASN VAL ALA GLU THR SER SEQRES 29 A 622 ASP GLY GLY VAL TYR TRP GLU GLY ILE ASP GLU PRO LEU SEQRES 30 A 622 ALA PRO GLY VAL THR ILE THR SER TRP LYS ASN LYS GLU SEQRES 31 A 622 TRP ARG PRO GLN ASP GLU GLU PRO CYS ALA HIS PRO ASN SEQRES 32 A 622 SER ARG PHE CYS THR PRO ALA SER GLN CYS PRO ILE ILE SEQRES 33 A 622 ASP PRO ALA TRP GLU SER PRO GLU GLY VAL PRO ILE GLU SEQRES 34 A 622 GLY ILE ILE PHE GLY GLY ARG ARG PRO ALA GLY VAL PRO SEQRES 35 A 622 LEU VAL TYR GLU ALA LEU SER TRP GLN HIS GLY VAL PHE SEQRES 36 A 622 VAL GLY ALA ALA MET ARG SER GLU ALA THR ALA ALA ALA SEQRES 37 A 622 GLU HIS LYS GLY LYS VAL ILE MET ARG ASP PRO PHE ALA SEQRES 38 A 622 MET ARG PRO PHE PHE GLY TYR ASN PHE GLY LYS TYR LEU SEQRES 39 A 622 ALA HIS TRP LEU SER MET ALA HIS ARG PRO ALA ALA LYS SEQRES 40 A 622 LEU PRO LYS ILE PHE HIS VAL ASN TRP PHE ARG LYS ASP SEQRES 41 A 622 LYS ASN GLY LYS PHE LEU TRP PRO GLY PHE GLY GLU ASN SEQRES 42 A 622 SER ARG VAL LEU GLU TRP MET PHE GLY ARG ILE GLU GLY SEQRES 43 A 622 GLU ASP SER ALA LYS LEU THR PRO ILE GLY TYR VAL PRO SEQRES 44 A 622 LYS GLU ASP ALA LEU ASN LEU LYS GLY LEU GLY ASP VAL SEQRES 45 A 622 ASN VAL GLU GLU LEU PHE GLY ILE SER LYS GLU PHE TRP SEQRES 46 A 622 GLU LYS GLU VAL GLU GLU ILE ASP LYS TYR LEU GLU ASP SEQRES 47 A 622 GLN VAL ASN ALA ASP LEU PRO TYR GLU ILE GLU ARG GLU SEQRES 48 A 622 LEU ARG ALA LEU LYS GLN ARG ILE SER GLN MET HET MN A 701 1 HET MN A 702 1 HET NA A 703 1 HET GTP A 704 32 HET SPV A 705 10 HET MN A 706 1 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM SPV SULFOPYRUVATE FORMUL 2 MN 3(MN 2+) FORMUL 4 NA NA 1+ FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 SPV C3 H4 O6 S FORMUL 8 HOH *208(H2 O) HELIX 1 AA1 PHE A 11 ALA A 13 5 3 HELIX 2 AA2 PRO A 24 GLN A 39 1 16 HELIX 3 AA3 SER A 49 GLU A 63 1 15 HELIX 4 AA4 GLU A 98 VAL A 103 1 6 HELIX 5 AA5 SER A 118 ALA A 128 1 11 HELIX 6 AA6 SER A 163 THR A 174 1 12 HELIX 7 AA7 GLY A 177 GLY A 185 1 9 HELIX 8 AA8 ASN A 213 THR A 217 5 5 HELIX 9 AA9 PRO A 223 ARG A 225 5 3 HELIX 10 AB1 TYR A 235 LEU A 240 1 6 HELIX 11 AB2 LEU A 248 GLY A 259 1 12 HELIX 12 AB3 GLY A 289 MET A 295 1 7 HELIX 13 AB4 ASN A 344 ILE A 351 1 8 HELIX 14 AB5 SER A 411 CYS A 413 5 3 HELIX 15 AB6 SER A 449 ALA A 459 1 11 HELIX 16 AB7 PRO A 479 MET A 482 5 4 HELIX 17 AB8 ASN A 489 MET A 500 1 12 HELIX 18 AB9 ALA A 501 ARG A 503 5 3 HELIX 19 AC1 GLY A 529 GLU A 532 5 4 HELIX 20 AC2 ASN A 533 GLY A 546 1 14 HELIX 21 AC3 ASN A 573 GLY A 579 1 7 HELIX 22 AC4 SER A 581 VAL A 600 1 20 HELIX 23 AC5 ASN A 601 LEU A 604 5 4 HELIX 24 AC6 PRO A 605 GLN A 621 1 17 SHEET 1 AA1 9 VAL A 15 GLN A 17 0 SHEET 2 AA1 9 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA1 9 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA1 9 LYS A 155 THR A 161 -1 O THR A 161 N TYR A 140 SHEET 5 AA1 9 ILE A 190 SER A 195 1 O CYS A 192 N ILE A 158 SHEET 6 AA1 9 GLU A 227 PHE A 231 1 O SER A 230 N LEU A 193 SHEET 7 AA1 9 LEU A 218 LEU A 222 -1 N ALA A 220 O ILE A 229 SHEET 8 AA1 9 THR A 92 ILE A 95 1 N ILE A 95 O HIS A 221 SHEET 9 AA1 9 TRP A 116 MET A 117 1 O MET A 117 N ILE A 94 SHEET 1 AA2 4 VAL A 15 GLN A 17 0 SHEET 2 AA2 4 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA2 4 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA2 4 ARG A 175 MET A 176 -1 O ARG A 175 N SER A 145 SHEET 1 AA3 5 ILE A 66 LEU A 69 0 SHEET 2 AA3 5 CYS A 75 ALA A 78 -1 O CYS A 75 N LEU A 69 SHEET 3 AA3 5 ILE A 356 THR A 358 1 O PHE A 357 N TRP A 76 SHEET 4 AA3 5 ARG A 405 PRO A 409 -1 O ARG A 405 N THR A 358 SHEET 5 AA3 5 GLY A 331 VAL A 335 -1 N GLY A 334 O PHE A 406 SHEET 1 AA4 7 LEU A 261 GLU A 263 0 SHEET 2 AA4 7 ALA A 313 PHE A 317 -1 O MET A 315 N LEU A 261 SHEET 3 AA4 7 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA4 7 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA4 7 LYS A 277 ALA A 283 1 N ALA A 281 O ILE A 432 SHEET 6 AA4 7 LEU A 266 THR A 271 -1 N ILE A 270 O LYS A 278 SHEET 7 AA4 7 LYS A 304 GLY A 309 -1 O GLU A 306 N GLY A 269 SHEET 1 AA5 6 LEU A 261 GLU A 263 0 SHEET 2 AA5 6 ALA A 313 PHE A 317 -1 O MET A 315 N LEU A 261 SHEET 3 AA5 6 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA5 6 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA5 6 LYS A 510 VAL A 514 1 O PHE A 512 N ILE A 431 SHEET 6 AA5 6 VAL A 444 GLU A 446 -1 N TYR A 445 O HIS A 513 SHEET 1 AA6 4 VAL A 368 TYR A 369 0 SHEET 2 AA6 4 ALA A 361 THR A 363 -1 N ALA A 361 O TYR A 369 SHEET 3 AA6 4 ILE A 383 THR A 384 -1 O THR A 384 N GLU A 362 SHEET 4 AA6 4 GLU A 390 TRP A 391 -1 O TRP A 391 N ILE A 383 SHEET 1 AA7 2 ARG A 461 SER A 462 0 SHEET 2 AA7 2 MET A 476 ARG A 477 -1 O MET A 476 N SER A 462 SHEET 1 AA8 2 ALA A 550 THR A 553 0 SHEET 2 AA8 2 GLY A 556 PRO A 559 -1 O VAL A 558 N LYS A 551 LINK OE2 GLU A 63 MN MN A 706 1555 1555 2.36 LINK O ASN A 208 NA NA A 703 1555 1555 2.47 LINK NZ LYS A 244 MN MN A 702 1555 1555 2.43 LINK NE2 HIS A 264 MN MN A 702 1555 1555 2.38 LINK OG1 THR A 291 MN MN A 701 1555 1555 2.20 LINK OD1 ASP A 311 MN MN A 702 1555 1555 2.17 LINK NE2 HIS A 502 MN MN A 706 1555 2555 2.44 LINK OE2 GLU A 607 MN MN A 706 1555 2555 2.20 LINK MN MN A 701 O2G GTP A 704 1555 1555 2.13 LINK MN MN A 701 O1B GTP A 704 1555 1555 2.13 LINK MN MN A 701 O HOH A 805 1555 1555 2.18 LINK MN MN A 701 O HOH A 810 1555 1555 2.25 LINK MN MN A 701 O HOH A 849 1555 1555 2.19 LINK MN MN A 702 O1G GTP A 704 1555 1555 2.32 LINK MN MN A 702 O1 SPV A 705 1555 1555 2.13 LINK MN MN A 702 O2 SPV A 705 1555 1555 2.32 LINK NA NA A 703 O HOH A 895 1555 1555 2.10 LINK NA NA A 703 O HOH A 940 1555 1555 3.03 LINK MN MN A 706 O HOH A 839 1555 1555 2.22 LINK MN MN A 706 O HOH A 951 1555 2545 2.26 CISPEP 1 LEU A 200 PRO A 201 0 -2.59 SITE 1 AC1 6 THR A 291 ASP A 310 GTP A 704 HOH A 805 SITE 2 AC1 6 HOH A 810 HOH A 849 SITE 1 AC2 5 LYS A 244 HIS A 264 ASP A 311 GTP A 704 SITE 2 AC2 5 SPV A 705 SITE 1 AC3 5 GLY A 64 LEU A 79 ASN A 208 HOH A 895 SITE 2 AC3 5 HOH A 940 SITE 1 AC4 25 HIS A 264 PRO A 285 SER A 286 ALA A 287 SITE 2 AC4 25 CYS A 288 GLY A 289 LYS A 290 THR A 291 SITE 3 AC4 25 ASN A 292 ASP A 311 VAL A 335 ARG A 405 SITE 4 AC4 25 ARG A 436 TRP A 516 PHE A 517 GLY A 529 SITE 5 AC4 25 PHE A 530 ASN A 533 MN A 701 MN A 702 SITE 6 AC4 25 SPV A 705 HOH A 810 HOH A 849 HOH A 855 SITE 7 AC4 25 HOH A 920 SITE 1 AC5 14 ARG A 87 GLY A 236 GLY A 237 LYS A 243 SITE 2 AC5 14 LYS A 244 HIS A 264 SER A 286 ASP A 311 SITE 3 AC5 14 PHE A 333 ARG A 405 MN A 702 GTP A 704 SITE 4 AC5 14 HOH A 840 HOH A 893 SITE 1 AC6 2 GLU A 63 HOH A 839 CRYST1 46.285 119.506 60.707 90.00 107.81 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021605 0.000000 0.006940 0.00000 SCALE2 0.000000 0.008368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017302 0.00000