HEADER APOPTOSIS 28-MAR-17 5VAU TITLE BCL-2 COMPLEX WITH BECLIN 1 BH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-2 -- BCL-2-LIKE PROTEIN 1 CHIMERA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BECLIN-1; COMPND 7 CHAIN: E, G, F, H; COMPND 8 SYNONYM: COILED-COIL MYOSIN-LIKE BCL2-INTERACTING PROTEIN,PROTEIN COMPND 9 GT197; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2, BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, BCL-2, AUTOPHAGY, BECLIN 1 EXPDTA X-RAY DIFFRACTION AUTHOR E.F.LEE,B.J.SMITH,S.YAO,W.D.FAIRLIE REVDAT 4 04-OCT-23 5VAU 1 REMARK REVDAT 3 01-JAN-20 5VAU 1 REMARK REVDAT 2 20-FEB-19 5VAU 1 REMARK REVDAT 1 04-APR-18 5VAU 0 JRNL AUTH E.F.LEE,B.J.SMITH,S.YAO JRNL TITL BCL-2 COMPLEX WITH BECLIN 1 BH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 78946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3293 - 5.3185 0.98 2753 145 0.1905 0.1896 REMARK 3 2 5.3185 - 4.2239 1.00 2747 144 0.1532 0.1492 REMARK 3 3 4.2239 - 3.6907 1.00 2708 143 0.1558 0.1801 REMARK 3 4 3.6907 - 3.3536 1.00 2703 142 0.1660 0.1832 REMARK 3 5 3.3536 - 3.1134 1.00 2703 142 0.1803 0.2213 REMARK 3 6 3.1134 - 2.9299 1.00 2683 142 0.1959 0.2458 REMARK 3 7 2.9299 - 2.7832 1.00 2695 141 0.1919 0.2476 REMARK 3 8 2.7832 - 2.6621 1.00 2668 141 0.1896 0.2276 REMARK 3 9 2.6621 - 2.5597 1.00 2707 142 0.1887 0.2301 REMARK 3 10 2.5597 - 2.4714 1.00 2673 141 0.1903 0.2236 REMARK 3 11 2.4714 - 2.3941 1.00 2668 140 0.1875 0.2057 REMARK 3 12 2.3941 - 2.3257 1.00 2693 142 0.1851 0.2170 REMARK 3 13 2.3257 - 2.2645 1.00 2685 141 0.1841 0.2304 REMARK 3 14 2.2645 - 2.2093 1.00 2659 140 0.1755 0.2332 REMARK 3 15 2.2093 - 2.1590 1.00 2684 142 0.1777 0.2258 REMARK 3 16 2.1590 - 2.1131 1.00 2680 141 0.1846 0.1920 REMARK 3 17 2.1131 - 2.0708 1.00 2651 139 0.1939 0.2316 REMARK 3 18 2.0708 - 2.0318 1.00 2672 141 0.1935 0.2341 REMARK 3 19 2.0318 - 1.9955 1.00 2674 141 0.2084 0.2340 REMARK 3 20 1.9955 - 1.9617 1.00 2655 139 0.2109 0.2453 REMARK 3 21 1.9617 - 1.9300 1.00 2666 141 0.2190 0.2804 REMARK 3 22 1.9300 - 1.9003 1.00 2643 139 0.2287 0.2615 REMARK 3 23 1.9003 - 1.8724 1.00 2696 142 0.2481 0.2454 REMARK 3 24 1.8724 - 1.8460 1.00 2666 140 0.2468 0.2925 REMARK 3 25 1.8460 - 1.8211 1.00 2652 140 0.2359 0.2965 REMARK 3 26 1.8211 - 1.7974 1.00 2639 139 0.2636 0.2953 REMARK 3 27 1.7974 - 1.7749 1.00 2657 139 0.2605 0.2962 REMARK 3 28 1.7749 - 1.7536 0.96 2619 138 0.2671 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5762 REMARK 3 ANGLE : 0.983 7836 REMARK 3 CHIRALITY : 0.041 807 REMARK 3 PLANARITY : 0.005 1033 REMARK 3 DIHEDRAL : 13.470 2081 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -7.8108 7.4711 22.1904 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1217 REMARK 3 T33: 0.1855 T12: -0.0076 REMARK 3 T13: 0.0208 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2687 L22: 0.0205 REMARK 3 L33: 0.1914 L12: 0.0376 REMARK 3 L13: 0.0907 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.0518 S13: 0.0047 REMARK 3 S21: -0.0162 S22: -0.0038 S23: -0.0135 REMARK 3 S31: 0.0041 S32: 0.0257 S33: 0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.754 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS CHLORIDE, PH 5.5, ).2M REMARK 280 AMMONIUM ACETATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.66850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 VAL A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 THR A 88 REMARK 465 GLU A 89 REMARK 465 ARG A 207 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 ALA B 73 REMARK 465 GLY B 74 REMARK 465 ASP B 75 REMARK 465 ASP B 76 REMARK 465 VAL B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 ASN B 80 REMARK 465 ARG B 81 REMARK 465 THR B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 87 REMARK 465 THR B 88 REMARK 465 PRO B 204 REMARK 465 SER B 205 REMARK 465 MET B 206 REMARK 465 ARG B 207 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 ARG C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 74 REMARK 465 ASP C 75 REMARK 465 ASP C 76 REMARK 465 VAL C 77 REMARK 465 GLU C 78 REMARK 465 GLU C 79 REMARK 465 ASN C 80 REMARK 465 ARG C 81 REMARK 465 THR C 82 REMARK 465 GLU C 83 REMARK 465 ALA C 84 REMARK 465 PRO C 85 REMARK 465 GLU C 86 REMARK 465 GLY C 87 REMARK 465 THR C 88 REMARK 465 GLU C 89 REMARK 465 SER C 205 REMARK 465 MET C 206 REMARK 465 ARG C 207 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 GLY D 8 REMARK 465 TYR D 9 REMARK 465 GLY D 74 REMARK 465 ASP D 75 REMARK 465 ASP D 76 REMARK 465 VAL D 77 REMARK 465 GLU D 78 REMARK 465 GLU D 79 REMARK 465 ASN D 80 REMARK 465 ARG D 81 REMARK 465 THR D 82 REMARK 465 GLU D 83 REMARK 465 ALA D 84 REMARK 465 PRO D 85 REMARK 465 GLU D 86 REMARK 465 GLY D 87 REMARK 465 THR D 88 REMARK 465 GLU D 89 REMARK 465 PRO D 204 REMARK 465 SER D 205 REMARK 465 MET D 206 REMARK 465 ARG D 207 REMARK 465 ASP E 105 REMARK 465 GLY E 106 REMARK 465 GLY E 107 REMARK 465 THR E 108 REMARK 465 GLN E 129 REMARK 465 THR E 130 REMARK 465 ASP G 105 REMARK 465 GLY G 106 REMARK 465 GLY G 107 REMARK 465 GLY G 128 REMARK 465 GLN G 129 REMARK 465 THR G 130 REMARK 465 ASP F 105 REMARK 465 GLY F 106 REMARK 465 GLY F 107 REMARK 465 GLN F 129 REMARK 465 THR F 130 REMARK 465 ASP H 105 REMARK 465 GLY H 106 REMARK 465 GLY H 107 REMARK 465 GLY H 128 REMARK 465 GLN H 129 REMARK 465 THR H 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 90 OG REMARK 470 ALA A 113 CB REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 MET A 206 CG SD CE REMARK 470 ASP B 31 CB CG OD1 OD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LEU B 175 CD1 CD2 REMARK 470 LYS C 17 CD CE NZ REMARK 470 ARG C 26 CD NE CZ NH1 NH2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 ASP C 31 CB CG OD1 OD2 REMARK 470 ARG C 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 SER C 117 OG REMARK 470 GLN C 118 CB CG CD OE1 NE2 REMARK 470 ASP D 31 CB CG OD1 OD2 REMARK 470 GLN D 99 CD OE1 NE2 REMARK 470 ARG D 109 CD NE CZ NH1 NH2 REMARK 470 GLN D 118 CB CG CD OE1 NE2 REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 110 CG CD OE1 OE2 REMARK 470 ASN E 111 CG OD1 ND2 REMARK 470 ARG E 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 110 CG CD OE1 OE2 REMARK 470 ARG G 114 CD NE CZ NH1 NH2 REMARK 470 ILE G 125 CD1 REMARK 470 GLU F 110 CG CD OE1 OE2 REMARK 470 THR H 108 OG1 CG2 REMARK 470 MET H 109 CG SD CE REMARK 470 GLU H 110 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 105 OE1 GLU C 152 2.09 REMARK 500 OD1 ASP H 124 O HOH H 201 2.16 REMARK 500 NH2 ARG A 26 O HOH A 301 2.16 REMARK 500 O HOH A 303 O HOH A 353 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 114 130.58 -39.88 REMARK 500 SER A 205 47.96 -83.73 REMARK 500 ALA B 113 -66.00 79.64 REMARK 500 ALA B 113 -162.82 52.98 REMARK 500 GLU B 114 -72.94 -118.28 REMARK 500 GLU B 114 -96.48 27.99 REMARK 500 MET B 115 -13.01 95.47 REMARK 500 MET B 115 -13.01 81.80 REMARK 500 HIS B 120 71.51 -115.94 REMARK 500 HIS B 120 78.68 -115.66 REMARK 500 ASP C 31 123.51 -171.33 REMARK 500 ALA D 113 -169.15 -66.55 REMARK 500 GLN D 118 51.09 -106.60 REMARK 500 LEU D 119 -55.41 -123.38 REMARK 500 ARG D 127 -71.77 -65.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 367 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 368 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH D 358 DISTANCE = 5.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VAX RELATED DB: PDB REMARK 900 RELATED ID: 5VAY RELATED DB: PDB REMARK 900 RELATED ID: 5VB1 RELATED DB: PDB REMARK 900 RELATED ID: 5VB4 RELATED DB: PDB DBREF 5VAU A 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAU A 76 91 PDB 5VAU 5VAU 76 91 DBREF 5VAU A 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAU B 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAU B 76 91 PDB 5VAU 5VAU 76 91 DBREF 5VAU B 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAU C 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAU C 76 91 PDB 5VAU 5VAU 76 91 DBREF 5VAU C 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAU D 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAU D 76 91 PDB 5VAU 5VAU 76 91 DBREF 5VAU D 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAU E 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAU G 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAU F 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAU H 105 130 UNP Q14457 BECN1_HUMAN 105 130 SEQADV 5VAU GLY A -1 UNP P10415 EXPRESSION TAG SEQADV 5VAU SER A 0 UNP P10415 EXPRESSION TAG SEQADV 5VAU GLY B -1 UNP P10415 EXPRESSION TAG SEQADV 5VAU SER B 0 UNP P10415 EXPRESSION TAG SEQADV 5VAU GLY C -1 UNP P10415 EXPRESSION TAG SEQADV 5VAU SER C 0 UNP P10415 EXPRESSION TAG SEQADV 5VAU GLY D -1 UNP P10415 EXPRESSION TAG SEQADV 5VAU SER D 0 UNP P10415 EXPRESSION TAG SEQRES 1 A 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 A 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 A 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 A 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 A 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 A 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 A 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 A 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 A 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 A 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 A 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 A 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 A 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 B 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 B 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 B 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 B 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 B 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 B 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 B 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 B 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 B 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 B 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 B 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 B 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 B 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 C 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 C 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 C 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 C 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 C 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 C 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 C 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 C 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 C 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 C 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 C 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 C 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 C 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 D 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 D 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 D 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 D 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 D 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 D 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 D 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 D 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 D 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 D 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 D 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 D 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 D 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 E 26 ASP GLY GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 E 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 G 26 ASP GLY GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 G 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 F 26 ASP GLY GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 F 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 H 26 ASP GLY GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 H 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR FORMUL 9 HOH *310(H2 O) HELIX 1 AA1 THR A 7 GLN A 25 1 19 HELIX 2 AA2 GLU A 91 PHE A 112 1 22 HELIX 3 AA3 GLU A 114 LEU A 119 5 6 HELIX 4 AA4 THR A 125 ARG A 139 1 15 HELIX 5 AA5 ASN A 143 ARG A 164 1 22 HELIX 6 AA6 PRO A 168 LEU A 185 1 18 HELIX 7 AA7 LEU A 185 ASN A 192 1 8 HELIX 8 AA8 GLY A 193 GLY A 203 1 11 HELIX 9 AA9 ASN B 11 GLN B 25 1 15 HELIX 10 AB1 SER B 90 ALA B 113 1 24 HELIX 11 AB2 THR B 122 ARG B 139 1 18 HELIX 12 AB3 ASN B 143 ARG B 164 1 22 HELIX 13 AB4 PRO B 168 LEU B 185 1 18 HELIX 14 AB5 LEU B 185 ASN B 192 1 8 HELIX 15 AB6 GLY B 193 GLY B 203 1 11 HELIX 16 AB7 ASP C 10 GLN C 25 1 16 HELIX 17 AB8 GLU C 91 PHE C 112 1 22 HELIX 18 AB9 GLU C 114 LEU C 119 5 6 HELIX 19 AC1 THR C 125 ARG C 139 1 15 HELIX 20 AC2 ASN C 143 ARG C 164 1 22 HELIX 21 AC3 SER C 167 LEU C 185 1 19 HELIX 22 AC4 LEU C 185 ASN C 192 1 8 HELIX 23 AC5 GLY C 193 GLY C 203 1 11 HELIX 24 AC6 ASN D 11 GLN D 25 1 15 HELIX 25 AC7 GLU D 91 PHE D 112 1 22 HELIX 26 AC8 GLU D 114 LEU D 119 5 6 HELIX 27 AC9 ALA D 126 PHE D 138 1 13 HELIX 28 AD1 ASN D 143 ARG D 164 1 22 HELIX 29 AD2 SER D 167 LEU D 185 1 19 HELIX 30 AD3 LEU D 185 ASN D 192 1 8 HELIX 31 AD4 GLY D 193 GLY D 203 1 11 HELIX 32 AD5 GLU E 110 GLY E 128 1 19 HELIX 33 AD6 MET G 109 MET G 126 1 18 HELIX 34 AD7 MET F 109 SER F 127 1 19 HELIX 35 AD8 MET H 109 MET H 126 1 18 CRYST1 85.498 53.337 91.664 90.00 107.84 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011696 0.000000 0.003764 0.00000 SCALE2 0.000000 0.018749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011460 0.00000