HEADER APOPTOSIS 28-MAR-17 5VAX TITLE BCL-2 COMPLEX WITH BECLIN 1 BH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-2 -- BCL-2-LIKE PROTEIN 1 CHIMERA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BECLIN-1; COMPND 8 CHAIN: E, F, G, H; COMPND 9 SYNONYM: COILED-COIL MYOSIN-LIKE BCL2-INTERACTING PROTEIN,PROTEIN COMPND 10 GT197; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2, BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, BCL-2, AUTOPHAGY, BECLIN 1 EXPDTA X-RAY DIFFRACTION AUTHOR E.F.LEE,B.J.SMITH,S.YAO,W.D.FAIRLIE REVDAT 2 04-OCT-23 5VAX 1 REMARK REVDAT 1 04-APR-18 5VAX 0 JRNL AUTH E.F.LEE,B.J.SMITH,S.YAO,W.D.FAIRLIE JRNL TITL BCL-2 COMPLEX WITH BECLIN 1 PT108 BH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7945 - 5.2383 1.00 2847 151 0.1959 0.2190 REMARK 3 2 5.2383 - 4.1585 1.00 2730 143 0.1665 0.1824 REMARK 3 3 4.1585 - 3.6330 1.00 2695 142 0.1727 0.2178 REMARK 3 4 3.6330 - 3.3009 1.00 2698 142 0.1862 0.2074 REMARK 3 5 3.3009 - 3.0644 1.00 2672 141 0.2117 0.2529 REMARK 3 6 3.0644 - 2.8837 1.00 2644 139 0.2030 0.2429 REMARK 3 7 2.8837 - 2.7393 1.00 2666 141 0.2062 0.2294 REMARK 3 8 2.7393 - 2.6201 1.00 2647 139 0.2097 0.2642 REMARK 3 9 2.6201 - 2.5192 1.00 2665 140 0.2199 0.2834 REMARK 3 10 2.5192 - 2.4323 1.00 2631 139 0.2180 0.2959 REMARK 3 11 2.4323 - 2.3562 1.00 2635 138 0.2365 0.2790 REMARK 3 12 2.3562 - 2.2889 1.00 2622 138 0.2426 0.2808 REMARK 3 13 2.2889 - 2.2286 1.00 2624 139 0.2685 0.2894 REMARK 3 14 2.2286 - 2.1743 1.00 2643 139 0.2644 0.3388 REMARK 3 15 2.1743 - 2.1248 1.00 2623 138 0.2802 0.3230 REMARK 3 16 2.1248 - 2.0796 1.00 2610 135 0.3360 0.3574 REMARK 3 17 2.0796 - 2.0380 0.99 2620 138 0.4265 0.5050 REMARK 3 18 2.0380 - 1.9996 0.97 2534 133 0.4045 0.4242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5468 REMARK 3 ANGLE : 0.833 7408 REMARK 3 CHIRALITY : 0.047 770 REMARK 3 PLANARITY : 0.005 955 REMARK 3 DIHEDRAL : 9.279 4048 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS CHLORIDE, PH 4.5, 0.2M REMARK 280 AMMONIUM ACETATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.23700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.31550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.58700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.31550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.23700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.58700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 VAL A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 ASP E 105 REMARK 465 GLY E 106 REMARK 465 GLY E 107 REMARK 465 THR E 130 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 73 REMARK 465 GLY B 74 REMARK 465 ASP B 75 REMARK 465 ASP B 76 REMARK 465 VAL B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 ASN B 80 REMARK 465 ARG B 81 REMARK 465 THR B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 ASP F 105 REMARK 465 GLY F 106 REMARK 465 GLY F 107 REMARK 465 GLN F 129 REMARK 465 THR F 130 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 ARG C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 TYR C 9 REMARK 465 ASP C 73 REMARK 465 GLY C 74 REMARK 465 ASP C 75 REMARK 465 ASP C 76 REMARK 465 VAL C 77 REMARK 465 GLU C 78 REMARK 465 GLU C 79 REMARK 465 ASN C 80 REMARK 465 ARG C 81 REMARK 465 THR C 82 REMARK 465 GLU C 83 REMARK 465 ALA C 84 REMARK 465 PRO C 85 REMARK 465 GLU C 86 REMARK 465 GLY C 87 REMARK 465 THR C 88 REMARK 465 GLU C 89 REMARK 465 PRO C 204 REMARK 465 SER C 205 REMARK 465 MET C 206 REMARK 465 ARG C 207 REMARK 465 ASP G 105 REMARK 465 GLY G 106 REMARK 465 THR G 130 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 GLY D 8 REMARK 465 GLY D 74 REMARK 465 ASP D 75 REMARK 465 ASP D 76 REMARK 465 VAL D 77 REMARK 465 GLU D 78 REMARK 465 GLU D 79 REMARK 465 ASN D 80 REMARK 465 ARG D 81 REMARK 465 THR D 82 REMARK 465 GLU D 83 REMARK 465 ALA D 84 REMARK 465 PRO D 85 REMARK 465 GLU D 86 REMARK 465 GLY D 87 REMARK 465 THR D 88 REMARK 465 GLU D 89 REMARK 465 SER D 90 REMARK 465 SER D 205 REMARK 465 MET D 206 REMARK 465 ARG D 207 REMARK 465 ASP H 105 REMARK 465 GLY H 106 REMARK 465 GLY H 107 REMARK 465 GLN H 129 REMARK 465 THR H 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CE NZ REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 ARG A 110 CZ NH1 NH2 REMARK 470 ALA A 113 CB REMARK 470 SER A 117 OG REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 ARG A 139 CZ NH1 NH2 REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 GLN A 190 CD OE1 NE2 REMARK 470 LEU A 201 CD1 CD2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 110 CB CG CD OE1 OE2 REMARK 470 LYS B 17 CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 29 CD OE1 OE2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 111 CG OD1 OD2 REMARK 470 ALA B 113 CB REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 HIS B 120 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ARG B 164 CD NE CZ NH1 NH2 REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 110 CG CD OE1 OE2 REMARK 470 ARG F 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 ALA C 113 CB REMARK 470 GLN C 118 CG CD OE1 NE2 REMARK 470 ARG C 139 CZ NH1 NH2 REMARK 470 GLU C 200 CG CD OE1 OE2 REMARK 470 GLN G 129 CG CD OE1 NE2 REMARK 470 LYS D 17 NZ REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 GLU D 91 CG CD OE1 OE2 REMARK 470 ARG D 109 CZ NH1 NH2 REMARK 470 ARG D 110 CG CD NE CZ NH1 NH2 REMARK 470 ALA D 113 CB REMARK 470 GLN D 118 CG CD OE1 NE2 REMARK 470 ARG D 183 NE CZ NH1 NH2 REMARK 470 GLU D 200 CG CD OE1 OE2 REMARK 470 PRO D 204 CA C O CB CG CD REMARK 470 GLU H 110 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 103 OH TYR B 202 2.06 REMARK 500 O HOH C 309 O HOH C 315 2.09 REMARK 500 O HOH B 308 O HOH B 313 2.11 REMARK 500 OD1 ASP A 103 OH TYR A 202 2.15 REMARK 500 O HOH B 306 O HOH B 323 2.18 REMARK 500 OH TYR C 18 OE2 GLU C 152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 165 41.35 72.77 REMARK 500 ALA B 113 -179.00 -68.19 REMARK 500 GLN B 118 24.14 -72.29 REMARK 500 ALA C 113 -178.71 -66.78 REMARK 500 HIS C 184 -31.12 -130.47 REMARK 500 ALA D 113 -179.76 -66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VAU RELATED DB: PDB REMARK 900 RELATED ID: 5VAY RELATED DB: PDB REMARK 900 RELATED ID: 5VB1 RELATED DB: PDB REMARK 900 RELATED ID: 5VB4 RELATED DB: PDB DBREF 5VAX A 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAX A 76 91 PDB 5VAX 5VAX 76 91 DBREF 5VAX A 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAX E 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAX B 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAX B 76 91 PDB 5VAX 5VAX 76 91 DBREF 5VAX B 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAX F 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAX C 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAX C 76 91 PDB 5VAX 5VAX 76 91 DBREF 5VAX C 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAX G 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAX D 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAX D 76 91 PDB 5VAX 5VAX 76 91 DBREF 5VAX D 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAX H 105 130 UNP Q14457 BECN1_HUMAN 105 130 SEQADV 5VAX GLY A -1 UNP P10415 EXPRESSION TAG SEQADV 5VAX SER A 0 UNP P10415 EXPRESSION TAG SEQADV 5VAX ASP A 73 UNP P10415 ALA 32 CONFLICT SEQADV 5VAX GLY B -1 UNP P10415 EXPRESSION TAG SEQADV 5VAX SER B 0 UNP P10415 EXPRESSION TAG SEQADV 5VAX ASP B 73 UNP P10415 ALA 32 CONFLICT SEQADV 5VAX GLY C -1 UNP P10415 EXPRESSION TAG SEQADV 5VAX SER C 0 UNP P10415 EXPRESSION TAG SEQADV 5VAX ASP C 73 UNP P10415 ALA 32 CONFLICT SEQADV 5VAX GLY D -1 UNP P10415 EXPRESSION TAG SEQADV 5VAX SER D 0 UNP P10415 EXPRESSION TAG SEQADV 5VAX ASP D 32 UNP P10415 ALA 32 CONFLICT SEQRES 1 A 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 A 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 A 168 GLN ARG GLY TYR GLU TRP ASP ASP GLY ASP ASP VAL GLU SEQRES 4 A 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 A 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 A 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 A 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 A 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 A 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 A 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 A 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 A 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 A 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 E 26 ASP GLY GLY TPO MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 E 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 B 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 B 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 B 168 GLN ARG GLY TYR GLU TRP ASP ASP GLY ASP ASP VAL GLU SEQRES 4 B 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 B 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 B 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 B 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 B 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 B 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 B 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 B 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 B 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 B 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 F 26 ASP GLY GLY TPO MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 F 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 C 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 C 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 C 168 GLN ARG GLY TYR GLU TRP ASP ASP GLY ASP ASP VAL GLU SEQRES 4 C 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 C 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 C 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 C 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 C 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 C 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 C 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 C 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 C 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 C 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 G 26 ASP GLY GLY TPO MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 G 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 D 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 D 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 D 168 GLN ARG GLY TYR GLU TRP ASP ASP GLY ASP ASP VAL GLU SEQRES 4 D 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 D 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 D 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 D 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 D 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 D 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 D 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 D 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 D 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 D 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 H 26 ASP GLY GLY TPO MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 H 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR MODRES 5VAX TPO E 108 THR MODIFIED RESIDUE MODRES 5VAX TPO F 108 THR MODIFIED RESIDUE MODRES 5VAX TPO G 108 THR MODIFIED RESIDUE MODRES 5VAX TPO H 108 THR MODIFIED RESIDUE HET TPO E 108 11 HET TPO F 108 11 HET TPO G 108 11 HET TPO H 108 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO 4(C4 H10 N O6 P) FORMUL 9 HOH *76(H2 O) HELIX 1 AA1 ASP A 10 GLN A 25 1 16 HELIX 2 AA2 GLU A 89 PHE A 112 1 24 HELIX 3 AA3 GLU A 114 LEU A 119 5 6 HELIX 4 AA4 THR A 125 PHE A 138 1 14 HELIX 5 AA5 ASN A 143 ARG A 164 1 22 HELIX 6 AA6 PRO A 168 LEU A 185 1 18 HELIX 7 AA7 LEU A 185 ASN A 192 1 8 HELIX 8 AA8 GLY A 193 GLY A 203 1 11 HELIX 9 AA9 PRO A 204 MET A 206 5 3 HELIX 10 AB1 MET E 109 GLY E 128 1 20 HELIX 11 AB2 GLY B 8 ARG B 26 1 19 HELIX 12 AB3 THR B 88 PHE B 112 1 25 HELIX 13 AB4 SER B 116 HIS B 120 5 5 HELIX 14 AB5 THR B 125 ASP B 140 1 16 HELIX 15 AB6 ASN B 143 ARG B 164 1 22 HELIX 16 AB7 PRO B 168 LEU B 185 1 18 HELIX 17 AB8 LEU B 185 ASN B 192 1 8 HELIX 18 AB9 GLY B 194 GLY B 203 1 10 HELIX 19 AC1 PRO B 204 MET B 206 5 3 HELIX 20 AC2 MET F 109 GLY F 128 1 20 HELIX 21 AC3 ASN C 11 GLN C 25 1 15 HELIX 22 AC4 GLU C 91 PHE C 112 1 22 HELIX 23 AC5 MET C 115 LEU C 119 5 5 HELIX 24 AC6 THR C 125 ARG C 139 1 15 HELIX 25 AC7 ASN C 143 ARG C 164 1 22 HELIX 26 AC8 PRO C 168 HIS C 184 1 17 HELIX 27 AC9 LEU C 185 ASN C 192 1 8 HELIX 28 AD1 GLY C 193 GLY C 203 1 11 HELIX 29 AD2 TPO G 108 SER G 127 1 20 HELIX 30 AD3 ASP D 10 ARG D 26 1 17 HELIX 31 AD4 VAL D 92 PHE D 112 1 21 HELIX 32 AD5 GLU D 114 LEU D 119 5 6 HELIX 33 AD6 THR D 125 ARG D 139 1 15 HELIX 34 AD7 ASN D 143 ARG D 164 1 22 HELIX 35 AD8 PRO D 168 LEU D 185 1 18 HELIX 36 AD9 LEU D 185 ASP D 191 1 7 HELIX 37 AE1 GLY D 193 GLY D 203 1 11 HELIX 38 AE2 MET H 109 GLY H 128 1 20 LINK C TPO E 108 N MET E 109 1555 1555 1.33 LINK C TPO F 108 N MET F 109 1555 1555 1.33 LINK C GLY G 107 N TPO G 108 1555 1555 1.33 LINK C TPO G 108 N MET G 109 1555 1555 1.33 LINK C TPO H 108 N MET H 109 1555 1555 1.33 CRYST1 66.474 87.174 126.631 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007897 0.00000