HEADER HYDROLASE 29-MAR-17 5VBM TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE DISULFIDE 2C07 BOUND TO K-RAS CYS TITLE 2 LIGHT M72C GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS GTPASE, INHIBITOR, GDP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.GENTILE,M.L.JENKINS,S.M.MOSS,J.E.BURKE,K.M.SHOKAT REVDAT 5 04-OCT-23 5VBM 1 LINK REVDAT 4 04-DEC-19 5VBM 1 REMARK REVDAT 3 03-JAN-18 5VBM 1 JRNL REVDAT 2 01-NOV-17 5VBM 1 JRNL REVDAT 1 25-OCT-17 5VBM 0 JRNL AUTH D.R.GENTILE,M.K.RATHINASWAMY,M.L.JENKINS,S.M.MOSS, JRNL AUTH 2 B.D.SIEMPELKAMP,A.R.RENSLO,J.E.BURKE,K.M.SHOKAT JRNL TITL RAS BINDER INDUCES A MODIFIED SWITCH-II POCKET IN GTP AND JRNL TITL 2 GDP STATES. JRNL REF CELL CHEM BIOL V. 24 1455 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 29033317 JRNL DOI 10.1016/J.CHEMBIOL.2017.08.025 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.5888 - 3.0909 0.99 2829 157 0.1652 0.1768 REMARK 3 2 3.0909 - 2.4533 1.00 2734 142 0.1738 0.1945 REMARK 3 3 2.4533 - 2.1432 1.00 2653 164 0.1608 0.1899 REMARK 3 4 2.1432 - 1.9472 1.00 2651 139 0.1691 0.1858 REMARK 3 5 1.9472 - 1.8076 0.99 2634 141 0.1731 0.2149 REMARK 3 6 1.8076 - 1.7011 0.98 2637 119 0.1840 0.2115 REMARK 3 7 1.7011 - 1.6159 0.98 2618 132 0.1869 0.2433 REMARK 3 8 1.6159 - 1.5455 0.98 2556 150 0.1932 0.2393 REMARK 3 9 1.5455 - 1.4860 0.93 2405 155 0.2181 0.2746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1414 REMARK 3 ANGLE : 1.105 1914 REMARK 3 CHIRALITY : 0.072 211 REMARK 3 PLANARITY : 0.006 242 REMARK 3 DIHEDRAL : 17.440 544 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:4) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5627 -13.7481 22.9503 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1805 REMARK 3 T33: 0.2200 T12: -0.0196 REMARK 3 T13: 0.0664 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 2.3424 L22: 2.1834 REMARK 3 L33: 1.4351 L12: 1.7656 REMARK 3 L13: 0.5178 L23: -0.6112 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.2477 S13: -0.1485 REMARK 3 S21: 0.2917 S22: -0.1880 S23: 0.2982 REMARK 3 S31: 0.2500 S32: 0.0195 S33: 0.1229 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:22) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3238 4.2005 17.6675 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.1370 REMARK 3 T33: 0.0450 T12: -0.0029 REMARK 3 T13: -0.0131 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.8837 L22: 6.7676 REMARK 3 L33: 2.1816 L12: 1.2930 REMARK 3 L13: -1.2908 L23: 0.2542 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.1730 S13: 0.1184 REMARK 3 S21: 0.0102 S22: 0.0120 S23: -0.1752 REMARK 3 S31: -0.0719 S32: 0.0071 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 23:28) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9416 6.0670 22.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.3886 REMARK 3 T33: 0.1633 T12: 0.0357 REMARK 3 T13: 0.0529 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 5.4682 L22: 5.1436 REMARK 3 L33: 3.8233 L12: 2.5639 REMARK 3 L13: -0.9451 L23: -4.2236 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: -0.5034 S13: -0.0867 REMARK 3 S21: 0.5532 S22: 0.1208 S23: 0.0787 REMARK 3 S31: -0.3499 S32: -1.1856 S33: -0.1564 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 29:34) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9143 13.8375 23.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.2835 T22: 0.2954 REMARK 3 T33: 0.2672 T12: 0.0437 REMARK 3 T13: -0.0028 T23: -0.1241 REMARK 3 L TENSOR REMARK 3 L11: 5.5059 L22: 0.7049 REMARK 3 L33: 8.9890 L12: -1.2167 REMARK 3 L13: 6.7072 L23: -2.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.2050 S12: -0.4733 S13: 1.0148 REMARK 3 S21: 0.0252 S22: 0.1985 S23: 0.1483 REMARK 3 S31: -1.2685 S32: -0.1571 S33: 0.1241 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 35:49) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5703 -3.2972 23.3931 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.1903 REMARK 3 T33: 0.1589 T12: 0.0216 REMARK 3 T13: 0.0190 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 7.7484 L22: 6.7790 REMARK 3 L33: 2.6393 L12: 6.6239 REMARK 3 L13: 3.9670 L23: 3.5535 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: -0.2678 S13: 0.0026 REMARK 3 S21: 0.1810 S22: -0.0578 S23: 0.2801 REMARK 3 S31: 0.1059 S32: -0.0168 S33: -0.0208 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 50:55) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0573 -7.7318 23.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.2090 REMARK 3 T33: 0.1782 T12: 0.0100 REMARK 3 T13: 0.0292 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 5.3641 L22: 8.4608 REMARK 3 L33: 0.9666 L12: 6.6932 REMARK 3 L13: 2.1222 L23: 2.4968 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -0.5562 S13: -0.0799 REMARK 3 S21: 0.2183 S22: -0.1529 S23: 0.2409 REMARK 3 S31: 0.1467 S32: 0.0094 S33: -0.0349 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 56:64) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6273 5.1129 21.7123 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.2902 REMARK 3 T33: 0.2118 T12: -0.1142 REMARK 3 T13: 0.0425 T23: -0.1165 REMARK 3 L TENSOR REMARK 3 L11: 3.6943 L22: 3.4413 REMARK 3 L33: 4.6675 L12: -3.3541 REMARK 3 L13: 1.6746 L23: -1.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: -0.2151 S13: 0.6713 REMARK 3 S21: 0.0189 S22: 0.2713 S23: -0.6177 REMARK 3 S31: -1.1064 S32: 0.5989 S33: -0.0414 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 65:70) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4346 -1.6275 25.1344 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.5323 REMARK 3 T33: 0.4495 T12: 0.1185 REMARK 3 T13: -0.0031 T23: -0.1249 REMARK 3 L TENSOR REMARK 3 L11: 9.8656 L22: 5.1615 REMARK 3 L33: 9.7018 L12: -1.4312 REMARK 3 L13: -7.6694 L23: 0.4383 REMARK 3 S TENSOR REMARK 3 S11: 0.2119 S12: -1.1578 S13: 0.0966 REMARK 3 S21: 0.9401 S22: 1.2046 S23: -1.0365 REMARK 3 S31: -0.4056 S32: 1.1527 S33: -0.5608 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 71:75) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6131 -7.6798 21.8809 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.2334 REMARK 3 T33: 0.2145 T12: 0.0559 REMARK 3 T13: -0.0310 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 6.4435 L22: 6.7450 REMARK 3 L33: 3.6650 L12: -3.8811 REMARK 3 L13: 0.2184 L23: 3.8652 REMARK 3 S TENSOR REMARK 3 S11: -0.6911 S12: -0.6614 S13: 0.5866 REMARK 3 S21: 0.4354 S22: 0.1337 S23: -0.4657 REMARK 3 S31: 0.1231 S32: 0.4261 S33: 0.4541 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 76:97) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0238 4.5470 8.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.0793 REMARK 3 T33: 0.1097 T12: -0.0266 REMARK 3 T13: 0.0279 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.3107 L22: 3.2868 REMARK 3 L33: 3.8983 L12: -1.6774 REMARK 3 L13: 0.1259 L23: -1.8538 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: 0.0328 S13: 0.2553 REMARK 3 S21: -0.2529 S22: -0.0375 S23: -0.1940 REMARK 3 S31: -0.2281 S32: 0.2326 S33: -0.0166 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 98:107) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5737 -8.4566 11.1879 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.1771 REMARK 3 T33: 0.2116 T12: 0.0294 REMARK 3 T13: 0.0280 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 7.3246 L22: 8.4662 REMARK 3 L33: 9.3217 L12: 0.0882 REMARK 3 L13: -1.3535 L23: -5.2787 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: 0.3292 S13: -0.3987 REMARK 3 S21: -0.3038 S22: -0.0044 S23: -0.6883 REMARK 3 S31: 0.5682 S32: 0.2683 S33: 0.0462 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 108:120) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2403 2.2021 8.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0859 REMARK 3 T33: 0.0531 T12: -0.0142 REMARK 3 T13: 0.0011 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.2412 L22: 5.8533 REMARK 3 L33: 2.5076 L12: -2.8250 REMARK 3 L13: 1.7210 L23: -2.7663 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: -0.0012 S13: -0.0422 REMARK 3 S21: -0.3891 S22: -0.0652 S23: 0.0487 REMARK 3 S31: -0.0811 S32: -0.0333 S33: -0.0442 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 121:126) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1555 13.8367 0.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.5076 T22: 0.1271 REMARK 3 T33: 0.2232 T12: 0.0574 REMARK 3 T13: 0.0428 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.0502 L22: 5.9500 REMARK 3 L33: 3.0073 L12: -4.1265 REMARK 3 L13: 1.2430 L23: -1.5810 REMARK 3 S TENSOR REMARK 3 S11: 0.1300 S12: -0.2130 S13: 0.2447 REMARK 3 S21: 0.0248 S22: -0.0363 S23: 0.4592 REMARK 3 S31: -1.2825 S32: -0.5320 S33: -0.1222 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 127:142) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9795 -0.4118 -0.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.1255 REMARK 3 T33: 0.0895 T12: 0.0314 REMARK 3 T13: -0.0192 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 6.7134 L22: 4.6723 REMARK 3 L33: 5.3655 L12: -1.5031 REMARK 3 L13: -1.5582 L23: -1.6761 REMARK 3 S TENSOR REMARK 3 S11: 0.2127 S12: 0.4476 S13: 0.0327 REMARK 3 S21: -0.6560 S22: -0.2536 S23: 0.0605 REMARK 3 S31: 0.4013 S32: 0.1724 S33: 0.0192 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 143:159) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4025 2.2699 11.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.1139 REMARK 3 T33: 0.1258 T12: 0.0092 REMARK 3 T13: -0.0162 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.5896 L22: 5.5595 REMARK 3 L33: 2.9560 L12: -3.6853 REMARK 3 L13: -0.1709 L23: 1.4711 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.0189 S13: -0.0186 REMARK 3 S21: -0.0972 S22: -0.0296 S23: 0.2763 REMARK 3 S31: -0.1549 S32: -0.1675 S33: 0.0859 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 160:169) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9748 -15.0934 11.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.0984 REMARK 3 T33: 0.1912 T12: -0.0131 REMARK 3 T13: 0.0104 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 7.7847 L22: 3.9543 REMARK 3 L33: 6.9542 L12: -5.1444 REMARK 3 L13: 1.1103 L23: -1.9301 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0777 S13: -0.5971 REMARK 3 S21: -0.2418 S22: 0.0863 S23: 0.7386 REMARK 3 S31: 0.1560 S32: -0.2709 S33: -0.0276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 55.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LYJ REMARK 200 REMARK 200 REMARK: RECTANGULAR PLATES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG4000 .1 M NA CITRATE (PH 4.6) REMARK 280 .2 M AMMONIUM ACETATE .22 M KCL (10% ADDITIVE OF 2.2 M KCL), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 115.09 -35.89 REMARK 500 ALA A 59 -159.09 -92.37 REMARK 500 LYS A 117 35.02 73.49 REMARK 500 SER A 122 57.50 -90.49 REMARK 500 ARG A 149 -5.29 82.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 202 O3B 94.4 REMARK 620 3 HOH A 320 O 82.1 91.3 REMARK 620 4 HOH A 323 O 171.1 87.9 89.2 REMARK 620 5 HOH A 334 O 91.8 90.2 173.8 96.8 REMARK 620 6 HOH A 346 O 89.9 171.6 96.5 88.9 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 92V A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VBE RELATED DB: PDB DBREF 5VBM A 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 5VBM GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 5VBM SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 5VBM CYS A 72 UNP P01116 MET 72 ENGINEERED MUTATION SEQADV 5VBM LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 5VBM SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR CYS ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS HET MG A 201 1 HET GDP A 202 37 HET 92V A 203 39 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 92V 1-(4-METHOXYPHENYL)-N-(3-SULFANYLPROPYL)-5- HETNAM 2 92V (TRIFLUOROMETHYL)-1H-PYRAZOLE-4-CARBOXAMIDE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 92V C15 H16 F3 N3 O2 S FORMUL 5 HOH *105(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 LYS A 104 1 19 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 GLU A 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O SER A 51 N VAL A 44 SHEET 3 AA1 6 MET A 1 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK SG CYS A 72 S24 92V A 203 1555 1555 2.06 LINK OG SER A 17 MG MG A 201 1555 1555 2.08 LINK MG MG A 201 O3B GDP A 202 1555 1555 2.02 LINK MG MG A 201 O HOH A 320 1555 1555 2.05 LINK MG MG A 201 O HOH A 323 1555 1555 2.06 LINK MG MG A 201 O HOH A 334 1555 1555 2.10 LINK MG MG A 201 O HOH A 346 1555 1555 2.09 SITE 1 AC1 6 SER A 17 GDP A 202 HOH A 320 HOH A 323 SITE 2 AC1 6 HOH A 334 HOH A 346 SITE 1 AC2 26 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 26 SER A 17 ALA A 18 PHE A 28 ASP A 30 SITE 3 AC2 26 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC2 26 SER A 145 ALA A 146 LYS A 147 MG A 201 SITE 5 AC2 26 HOH A 302 HOH A 306 HOH A 320 HOH A 323 SITE 6 AC2 26 HOH A 334 HOH A 344 HOH A 352 HOH A 356 SITE 7 AC2 26 HOH A 359 HOH A 394 SITE 1 AC3 9 ARG A 68 CYS A 72 HIS A 95 TYR A 96 SITE 2 AC3 9 GLN A 99 THR A 148 ARG A 149 GLN A 150 SITE 3 AC3 9 HOH A 311 CRYST1 32.600 41.180 111.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009001 0.00000