HEADER DNA BINDING PROTEIN 31-MAR-17 5VC9 TITLE ZINC FINGER OF HUMAN CXXC4 IN COMPLEX WITH CPG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CPG DNA; COMPND 3 CHAIN: A, B, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CXXC-TYPE ZINC FINGER PROTEIN 4; COMPND 7 CHAIN: C, F; COMPND 8 SYNONYM: INHIBITION OF THE DVL AND AXIN COMPLEX PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: CXXC4, IDAX; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CXXC, DNA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.LIU,C.XU,W.TEMPEL,J.R.WALKER,C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 03-APR-24 5VC9 1 REMARK REVDAT 4 06-MAR-24 5VC9 1 REMARK REVDAT 3 10-JAN-18 5VC9 1 JRNL REVDAT 2 03-JAN-18 5VC9 1 JRNL REVDAT 1 28-JUN-17 5VC9 0 JRNL AUTH C.XU,K.LIU,M.LEI,A.YANG,Y.LI,T.R.HUGHES,J.MIN JRNL TITL DNA SEQUENCE RECOGNITION OF HUMAN CXXC DOMAINS AND THEIR JRNL TITL 2 STRUCTURAL DETERMINANTS. JRNL REF STRUCTURE V. 26 85 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29276034 JRNL DOI 10.1016/J.STR.2017.11.022 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 12637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN RESOLUTION SHELLS REMARK 3 (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 750 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 668 REMARK 3 NUCLEIC ACID ATOMS : 972 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.70000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.841 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1790 ; 0.017 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1206 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2602 ; 1.554 ; 1.456 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2790 ; 1.474 ; 3.011 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 92 ; 6.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;34.972 ;19.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 134 ;11.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;23.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1333 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 394 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 367 ; 1.781 ; 3.003 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 365 ; 1.783 ; 3.001 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 455 ; 2.489 ; 4.488 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6601 -0.4716 6.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.1016 REMARK 3 T33: 0.1448 T12: -0.0488 REMARK 3 T13: 0.0080 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.9790 L22: 4.5282 REMARK 3 L33: 1.7908 L12: 2.4752 REMARK 3 L13: -1.3270 L23: 0.2936 REMARK 3 S TENSOR REMARK 3 S11: 0.3049 S12: -0.3141 S13: -0.1359 REMARK 3 S21: 0.8907 S22: -0.4221 S23: 0.1779 REMARK 3 S31: -0.0913 S32: -0.1564 S33: 0.1172 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3908 -0.8380 5.8869 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1513 REMARK 3 T33: 0.1121 T12: -0.0649 REMARK 3 T13: 0.0030 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.0442 L22: 7.2435 REMARK 3 L33: 2.5377 L12: 1.3840 REMARK 3 L13: -0.4371 L23: 0.3748 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.1488 S13: -0.1526 REMARK 3 S21: 0.0904 S22: -0.1255 S23: -0.0463 REMARK 3 S31: 0.1473 S32: -0.0758 S33: 0.0548 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 134 C 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2048 0.1380 -6.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: 0.0665 REMARK 3 T33: 0.0801 T12: 0.0235 REMARK 3 T13: -0.0048 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 4.0198 L22: 3.5495 REMARK 3 L33: 7.5413 L12: -0.5037 REMARK 3 L13: -0.2204 L23: 0.7581 REMARK 3 S TENSOR REMARK 3 S11: 0.2432 S12: 0.3657 S13: -0.2139 REMARK 3 S21: -0.0952 S22: -0.1483 S23: -0.0804 REMARK 3 S31: 0.3272 S32: 0.0167 S33: -0.0949 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 12 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9980 19.6941 -29.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1127 REMARK 3 T33: 0.1053 T12: 0.0466 REMARK 3 T13: 0.0699 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.8986 L22: 6.1102 REMARK 3 L33: 1.2393 L12: -3.0750 REMARK 3 L13: 2.0027 L23: -0.8831 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: 0.2436 S13: -0.0952 REMARK 3 S21: -0.4505 S22: -0.1622 S23: 0.2883 REMARK 3 S31: 0.0439 S32: 0.0655 S33: 0.0286 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 12 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8566 19.9392 -28.8634 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1427 REMARK 3 T33: 0.1051 T12: 0.0350 REMARK 3 T13: 0.0344 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.2442 L22: 6.8196 REMARK 3 L33: 2.0191 L12: -2.6904 REMARK 3 L13: 0.5648 L23: -0.1055 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: 0.1785 S13: 0.0805 REMARK 3 S21: -0.1500 S22: -0.0559 S23: 0.0410 REMARK 3 S31: -0.1827 S32: -0.0559 S33: -0.0386 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 134 F 1002 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2439 19.0941 -15.8201 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0665 REMARK 3 T33: 0.1031 T12: 0.0116 REMARK 3 T13: 0.0637 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.5640 L22: 3.3205 REMARK 3 L33: 7.1939 L12: 0.8636 REMARK 3 L13: 0.1110 L23: 0.7036 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: -0.2489 S13: 0.3941 REMARK 3 S21: 0.0611 S22: -0.0846 S23: -0.0029 REMARK 3 S31: -0.4111 S32: 0.0089 S33: -0.1784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COOT WAS USED FOR INTERACTIVE MODEL REMARK 3 BUILDING. MODEL GEOMETRY WAS ASSESSED WITH PHENIX.MOLPROBITY. REMARK 4 REMARK 4 5VC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 27.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF RELATED PROTEIN-DNA COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-1500, 5% MPD, 0.2 M SODIUM REMARK 280 CHLORIDE, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 132 REMARK 465 LYS C 133 REMARK 465 GLY C 180 REMARK 465 GLY F 132 REMARK 465 LYS F 133 REMARK 465 LYS F 178 REMARK 465 PRO F 179 REMARK 465 GLY F 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 LYS C 135 CE NZ REMARK 470 LYS C 137 CD CE NZ REMARK 470 LYS C 146 CE NZ REMARK 470 ARG C 147 CD NE CZ NH1 NH2 REMARK 470 LYS C 161 CD CE NZ REMARK 470 LYS C 168 CG CD CE NZ REMARK 470 LYS C 177 CD CE NZ REMARK 470 LYS C 178 NZ REMARK 470 LYS F 134 CG CD CE NZ REMARK 470 LYS F 135 CD CE NZ REMARK 470 LYS F 137 CE NZ REMARK 470 LYS F 146 CE NZ REMARK 470 LYS F 161 CD CE NZ REMARK 470 LYS F 168 CD CE NZ REMARK 470 LYS F 177 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 10 O3' DG A 11 P -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 5 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG F 138 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 139 SG REMARK 620 2 CYS C 142 SG 114.3 REMARK 620 3 CYS C 145 SG 118.9 103.3 REMARK 620 4 CYS C 172 SG 100.6 118.8 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 151 SG REMARK 620 2 CYS C 154 SG 108.7 REMARK 620 3 CYS C 157 SG 119.1 103.2 REMARK 620 4 CYS C 167 SG 104.9 117.6 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 139 SG REMARK 620 2 CYS F 142 SG 110.7 REMARK 620 3 CYS F 145 SG 118.2 98.4 REMARK 620 4 CYS F 172 SG 105.3 120.9 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 151 SG REMARK 620 2 CYS F 154 SG 106.1 REMARK 620 3 CYS F 157 SG 122.4 105.9 REMARK 620 4 CYS F 167 SG 103.6 116.8 102.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 1002 DBREF 5VC9 A 1 12 PDB 5VC9 5VC9 1 12 DBREF 5VC9 B 1 12 PDB 5VC9 5VC9 1 12 DBREF 5VC9 C 133 180 UNP Q9H2H0 CXXC4_HUMAN 133 180 DBREF 5VC9 D 1 12 PDB 5VC9 5VC9 1 12 DBREF 5VC9 E 1 12 PDB 5VC9 5VC9 1 12 DBREF 5VC9 F 133 180 UNP Q9H2H0 CXXC4_HUMAN 133 180 SEQADV 5VC9 GLY C 132 UNP Q9H2H0 EXPRESSION TAG SEQADV 5VC9 GLY F 132 UNP Q9H2H0 EXPRESSION TAG SEQRES 1 A 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 B 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 C 49 GLY LYS LYS LYS ARG LYS ARG CYS GLY VAL CYS VAL PRO SEQRES 2 C 49 CYS LYS ARG LEU ILE ASN CYS GLY VAL CYS SER SER CYS SEQRES 3 C 49 ARG ASN ARG LYS THR GLY HIS GLN ILE CYS LYS PHE ARG SEQRES 4 C 49 LYS CYS GLU GLU LEU LYS LYS LYS PRO GLY SEQRES 1 D 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 E 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 F 49 GLY LYS LYS LYS ARG LYS ARG CYS GLY VAL CYS VAL PRO SEQRES 2 F 49 CYS LYS ARG LEU ILE ASN CYS GLY VAL CYS SER SER CYS SEQRES 3 F 49 ARG ASN ARG LYS THR GLY HIS GLN ILE CYS LYS PHE ARG SEQRES 4 F 49 LYS CYS GLU GLU LEU LYS LYS LYS PRO GLY HET UNX A 101 1 HET UNX A 102 1 HET ZN C1001 1 HET ZN C1002 1 HET UNX D 101 1 HET UNX D 102 1 HET UNX D 103 1 HET UNX E 101 1 HET ZN F1001 1 HET ZN F1002 1 HET UNX F1003 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM ZN ZINC ION FORMUL 7 UNX 7(X) FORMUL 9 ZN 4(ZN 2+) FORMUL 18 HOH *30(H2 O) HELIX 1 AA1 CYS C 142 ARG C 147 1 6 HELIX 2 AA2 CYS C 154 ASN C 159 1 6 HELIX 3 AA3 ASN C 159 HIS C 164 1 6 HELIX 4 AA4 CYS C 172 LYS C 176 5 5 HELIX 5 AA5 CYS F 154 ASN F 159 1 6 HELIX 6 AA6 ASN F 159 HIS F 164 1 6 HELIX 7 AA7 CYS F 172 LYS F 176 5 5 LINK SG CYS C 139 ZN ZN C1001 1555 1555 2.33 LINK SG CYS C 142 ZN ZN C1001 1555 1555 2.27 LINK SG CYS C 145 ZN ZN C1001 1555 1555 2.34 LINK SG CYS C 151 ZN ZN C1002 1555 1555 2.29 LINK SG CYS C 154 ZN ZN C1002 1555 1555 2.35 LINK SG CYS C 157 ZN ZN C1002 1555 1555 2.32 LINK SG CYS C 167 ZN ZN C1002 1555 1555 2.32 LINK SG CYS C 172 ZN ZN C1001 1555 1555 2.34 LINK SG CYS F 139 ZN ZN F1001 1555 1555 2.25 LINK SG CYS F 142 ZN ZN F1001 1555 1555 2.29 LINK SG CYS F 145 ZN ZN F1001 1555 1555 2.33 LINK SG CYS F 151 ZN ZN F1002 1555 1555 2.26 LINK SG CYS F 154 ZN ZN F1002 1555 1555 2.36 LINK SG CYS F 157 ZN ZN F1002 1555 1555 2.28 LINK SG CYS F 167 ZN ZN F1002 1555 1555 2.36 LINK SG CYS F 172 ZN ZN F1001 1555 1555 2.26 SITE 1 AC1 4 CYS C 139 CYS C 142 CYS C 145 CYS C 172 SITE 1 AC2 4 CYS C 151 CYS C 154 CYS C 157 CYS C 167 SITE 1 AC3 5 CYS F 139 GLY F 140 CYS F 142 CYS F 145 SITE 2 AC3 5 CYS F 172 SITE 1 AC4 4 CYS F 151 CYS F 154 CYS F 157 CYS F 167 CRYST1 29.983 40.290 57.760 70.98 86.43 67.83 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033352 -0.013590 0.002505 0.00000 SCALE2 0.000000 0.026802 -0.009281 0.00000 SCALE3 0.000000 0.000000 0.018357 0.00000