HEADER TRANSFERASE 03-APR-17 5VDQ TITLE HUMAN CYCLIC GMP-AMP SYNTHASE (CGAS) IN COMPLEX WITH 2',5'-GPAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 6 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, STING, CGAMP EXPDTA X-RAY DIFFRACTION AUTHOR L.J.BYRNES,J.D.HALL REVDAT 4 04-OCT-23 5VDQ 1 REMARK REVDAT 3 06-DEC-17 5VDQ 1 JRNL REVDAT 2 04-OCT-17 5VDQ 1 JRNL REVDAT 1 27-SEP-17 5VDQ 0 JRNL AUTH J.HALL,E.C.RALPH,S.SHANKER,H.WANG,L.J.BYRNES,R.HORST,J.WONG, JRNL AUTH 2 A.BRAULT,D.DUMLAO,J.F.SMITH,L.A.DAKIN,D.C.SCHMITT, JRNL AUTH 3 J.TRUJILLO,F.VINCENT,M.GRIFFOR,A.E.AULABAUGH JRNL TITL THE CATALYTIC MECHANISM OF CYCLIC GMP-AMP SYNTHASE (CGAS) JRNL TITL 2 AND IMPLICATIONS FOR INNATE IMMUNITY AND INHIBITION. JRNL REF PROTEIN SCI. V. 26 2367 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28940468 JRNL DOI 10.1002/PRO.3304 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.5002 - 5.5484 0.98 2654 138 0.1893 0.2355 REMARK 3 2 5.5484 - 4.4045 0.99 2596 122 0.1810 0.2431 REMARK 3 3 4.4045 - 3.8479 0.99 2589 121 0.1974 0.2527 REMARK 3 4 3.8479 - 3.4962 1.00 2565 129 0.2417 0.2915 REMARK 3 5 3.4962 - 3.2456 1.00 2543 142 0.3042 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5894 REMARK 3 ANGLE : 0.677 7949 REMARK 3 CHIRALITY : 0.033 876 REMARK 3 PLANARITY : 0.003 994 REMARK 3 DIHEDRAL : 13.258 2177 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1993 -26.5321 -23.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.8220 T22: 0.5612 REMARK 3 T33: 0.6432 T12: 0.0778 REMARK 3 T13: -0.0225 T23: 0.1695 REMARK 3 L TENSOR REMARK 3 L11: 2.3685 L22: 3.5844 REMARK 3 L33: 1.5699 L12: 1.6184 REMARK 3 L13: 1.8457 L23: 1.8097 REMARK 3 S TENSOR REMARK 3 S11: 0.6823 S12: 0.4823 S13: -1.5625 REMARK 3 S21: 0.2403 S22: -0.3505 S23: -0.5091 REMARK 3 S31: 0.5326 S32: 0.4250 S33: -0.2611 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7941 -7.2803 -17.4509 REMARK 3 T TENSOR REMARK 3 T11: 0.5291 T22: 0.8081 REMARK 3 T33: 0.7759 T12: -0.1284 REMARK 3 T13: -0.1310 T23: 0.1034 REMARK 3 L TENSOR REMARK 3 L11: 1.8265 L22: 5.7952 REMARK 3 L33: 3.3647 L12: -2.8579 REMARK 3 L13: -0.7314 L23: 0.4670 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.1025 S13: 0.2974 REMARK 3 S21: -0.0809 S22: -0.0307 S23: -1.2465 REMARK 3 S31: -0.3928 S32: 0.8259 S33: 0.0892 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6438 -9.7256 -20.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.5888 T22: 0.5068 REMARK 3 T33: 0.5456 T12: -0.0644 REMARK 3 T13: -0.0336 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 5.3782 L22: 2.5298 REMARK 3 L33: 6.2968 L12: -1.8948 REMARK 3 L13: -2.0570 L23: 1.2407 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: -0.3271 S13: -0.0141 REMARK 3 S21: -0.2179 S22: -0.2482 S23: -0.3708 REMARK 3 S31: -0.3992 S32: 0.7617 S33: 0.0974 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1431 -9.7867 -23.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.5095 T22: 0.2967 REMARK 3 T33: 0.3141 T12: -0.0200 REMARK 3 T13: 0.0433 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 4.7124 L22: 3.4875 REMARK 3 L33: 5.8719 L12: 0.6926 REMARK 3 L13: 0.9958 L23: -1.0826 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.1829 S13: -0.0410 REMARK 3 S21: -0.1264 S22: 0.1204 S23: 0.2216 REMARK 3 S31: 0.0005 S32: -0.0723 S33: -0.1157 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6025 -14.1660 20.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.6129 T22: 0.9270 REMARK 3 T33: 1.0472 T12: 0.0303 REMARK 3 T13: 0.1276 T23: 0.1767 REMARK 3 L TENSOR REMARK 3 L11: 4.5193 L22: 1.6649 REMARK 3 L33: 1.0255 L12: -0.9596 REMARK 3 L13: 0.0487 L23: 0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: 0.6221 S13: 1.1465 REMARK 3 S21: -0.1526 S22: -0.2162 S23: -0.7428 REMARK 3 S31: -0.3084 S32: 0.5925 S33: 0.0585 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 249 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3571 -23.5188 19.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.6521 T22: 0.9531 REMARK 3 T33: 0.6884 T12: 0.0734 REMARK 3 T13: 0.0167 T23: 0.2051 REMARK 3 L TENSOR REMARK 3 L11: 5.1327 L22: 4.3929 REMARK 3 L33: 3.6627 L12: 1.1264 REMARK 3 L13: 1.6145 L23: 0.3799 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.1051 S13: 0.0244 REMARK 3 S21: 0.4555 S22: -0.4505 S23: -1.0609 REMARK 3 S31: 0.4288 S32: 1.0002 S33: 0.2927 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 389 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4936 -21.9941 23.9181 REMARK 3 T TENSOR REMARK 3 T11: 0.4344 T22: 0.4079 REMARK 3 T33: 0.3560 T12: 0.0113 REMARK 3 T13: -0.0073 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.6123 L22: 2.9610 REMARK 3 L33: 7.5360 L12: -0.7148 REMARK 3 L13: -0.7862 L23: -1.0992 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.0386 S13: -0.0807 REMARK 3 S21: 0.0764 S22: 0.1774 S23: 0.2279 REMARK 3 S31: -0.0431 S32: 0.1060 S33: -0.2196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 3338 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13619 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.246 REMARK 200 RESOLUTION RANGE LOW (A) : 55.492 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4O67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 0.2 M AMMONIUM REMARK 280 CITRATE PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 107.60550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.81600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 107.60550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.81600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 219 REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 PHE A 522 REMARK 465 SER B 213 REMARK 465 TYR B 214 REMARK 465 TYR B 215 REMARK 465 GLU B 216 REMARK 465 HIS B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 ILE B 220 REMARK 465 SER B 221 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASN A 289 CG OD1 ND2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ARG A 339 CD NE CZ NH1 NH2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 THR B 211 OG1 CG2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 ASP B 295 CG OD1 OD2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 GLU B 385 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 LYS B 425 CG CD CE NZ REMARK 470 ASP B 426 CG OD1 OD2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 435 O28 9BG A 602 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 203 31.74 -99.69 REMARK 500 PRO A 223 2.49 -44.31 REMARK 500 ARG A 246 -10.24 67.79 REMARK 500 GLU A 267 66.34 -107.92 REMARK 500 ASN A 289 66.50 -67.55 REMARK 500 TRP A 343 -64.23 -106.45 REMARK 500 SER A 345 152.05 76.82 REMARK 500 PRO A 361 76.72 -67.84 REMARK 500 GLU A 372 14.55 52.39 REMARK 500 PHE A 424 42.55 -103.60 REMARK 500 PHE A 516 73.74 51.70 REMARK 500 PHE B 203 31.18 -99.47 REMARK 500 ARG B 246 -10.61 68.29 REMARK 500 GLU B 267 66.45 -108.00 REMARK 500 ASP B 293 -6.14 63.65 REMARK 500 TRP B 343 -63.31 -106.44 REMARK 500 SER B 345 151.42 76.59 REMARK 500 PRO B 361 77.85 -68.12 REMARK 500 GLU B 372 16.52 -69.28 REMARK 500 PHE B 424 43.06 -103.98 REMARK 500 PHE B 516 73.43 52.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 118.5 REMARK 620 3 CYS A 397 SG 87.7 120.5 REMARK 620 4 CYS A 404 SG 106.0 120.6 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 116.4 REMARK 620 3 CYS B 397 SG 94.2 123.2 REMARK 620 4 CYS B 404 SG 96.1 117.1 104.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9BG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9BG B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VDO RELATED DB: PDB REMARK 900 RELATED ID: 5VDP RELATED DB: PDB REMARK 900 RELATED ID: 5VDR RELATED DB: PDB REMARK 900 RELATED ID: 5VDS RELATED DB: PDB REMARK 900 RELATED ID: 5VDT RELATED DB: PDB REMARK 900 RELATED ID: 5VDU RELATED DB: PDB REMARK 900 RELATED ID: 5VDV RELATED DB: PDB REMARK 900 RELATED ID: 5VDW RELATED DB: PDB DBREF 5VDQ A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 5VDQ B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQADV 5VDQ MET A 160 UNP Q8N884 EXPRESSION TAG SEQADV 5VDQ MET B 160 UNP Q8N884 EXPRESSION TAG SEQRES 1 A 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 A 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 A 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 A 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 A 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 A 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 A 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 A 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 A 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 A 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 A 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 A 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 A 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 A 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 A 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 A 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 A 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 A 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 A 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 A 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 A 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 A 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 A 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 A 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 A 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 A 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 B 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 B 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 B 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 B 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 B 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 B 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 B 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 B 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 B 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 B 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 B 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 B 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 B 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 B 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 B 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 B 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 B 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 B 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 B 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 B 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 B 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 B 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 B 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 B 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 B 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 B 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 B 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET 9BG A 602 46 HET ZN B 601 1 HET 9BG B 602 46 HETNAM ZN ZINC ION HETNAM 9BG 2',5'-GPAP HETSYN 9BG [(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4- HETSYN 2 9BG OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHYL [(2~{R}, HETSYN 3 9BG 3~{R},4~{R},5~{R})-2-(2-AZANYL-6-OXIDANYLIDENE-3~{H}- HETSYN 4 9BG PURIN-9-YL)-5-(HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-3-YL] HETSYN 5 9BG HYDROGEN PHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 9BG 2(C20 H26 N10 O14 P2) HELIX 1 AA1 GLY A 161 LYS A 173 1 13 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 ASN A 260 GLN A 264 5 5 HELIX 4 AA4 SER A 272 ILE A 288 1 17 HELIX 5 AA5 PRO A 331 GLN A 335 5 5 HELIX 6 AA6 ILE A 340 SER A 345 1 6 HELIX 7 AA7 SER A 345 LEU A 354 1 10 HELIX 8 AA8 PHE A 379 ASN A 389 1 11 HELIX 9 AA9 ASN A 399 LYS A 403 5 5 HELIX 10 AB1 CYS A 405 PHE A 424 1 20 HELIX 11 AB2 SER A 434 ASN A 449 1 16 HELIX 12 AB3 GLN A 451 LYS A 458 5 8 HELIX 13 AB4 ASP A 459 GLU A 478 1 20 HELIX 14 AB5 ASP A 497 ASN A 514 1 18 HELIX 15 AB6 GLU A 515 ASP A 520 5 6 HELIX 16 AB7 GLY B 161 LYS B 173 1 13 HELIX 17 AB8 SER B 175 LYS B 198 1 24 HELIX 18 AB9 LEU B 262 LEU B 266 5 5 HELIX 19 AC1 SER B 272 ILE B 288 1 17 HELIX 20 AC2 PRO B 331 GLN B 335 5 5 HELIX 21 AC3 ILE B 340 SER B 345 1 6 HELIX 22 AC4 SER B 345 LEU B 354 1 10 HELIX 23 AC5 PHE B 379 ASN B 389 1 11 HELIX 24 AC6 ASN B 399 LYS B 403 5 5 HELIX 25 AC7 CYS B 405 PHE B 424 1 20 HELIX 26 AC8 SER B 434 ASN B 449 1 16 HELIX 27 AC9 GLN B 451 LYS B 458 5 8 HELIX 28 AD1 ASP B 459 GLU B 478 1 20 HELIX 29 AD2 ASP B 497 ASN B 514 1 18 SHEET 1 AA1 7 VAL A 206 LEU A 209 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA1 7 PHE A 357 VAL A 360 -1 O PHE A 357 N SER A 326 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 AA2 5 VAL A 206 LEU A 209 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA2 5 ALA A 307 ILE A 312 -1 N LEU A 310 O VAL A 318 SHEET 5 AA2 5 VAL A 296 MET A 298 -1 N ILE A 297 O LEU A 311 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 SHEET 1 AA4 2 LYS A 365 GLU A 366 0 SHEET 2 AA4 2 GLY A 369 PHE A 370 -1 O GLY A 369 N GLU A 366 SHEET 1 AA5 7 VAL B 206 LEU B 209 0 SHEET 2 AA5 7 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA5 7 ILE B 316 SER B 326 1 O SER B 317 N PHE B 226 SHEET 4 AA5 7 PHE B 357 VAL B 360 -1 O PHE B 357 N SER B 326 SHEET 5 AA5 7 TRP B 375 SER B 378 -1 O ARG B 376 N VAL B 360 SHEET 6 AA5 7 TYR B 248 PHE B 253 -1 N TYR B 249 O TRP B 375 SHEET 7 AA5 7 ILE B 237 GLU B 241 -1 N GLN B 238 O LYS B 252 SHEET 1 AA6 5 VAL B 206 LEU B 209 0 SHEET 2 AA6 5 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA6 5 ILE B 316 SER B 326 1 O SER B 317 N PHE B 226 SHEET 4 AA6 5 ALA B 307 ILE B 312 -1 N LEU B 310 O VAL B 318 SHEET 5 AA6 5 VAL B 296 MET B 298 -1 N ILE B 297 O LEU B 311 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.42 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.46 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.25 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.26 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.46 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.30 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.34 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 SITE 1 AC2 9 GLU A 216 ASP A 227 SER A 305 ALA A 307 SITE 2 AC2 9 LYS A 362 ARG A 376 SER A 434 SER A 435 SITE 3 AC2 9 TYR A 436 SITE 1 AC3 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC4 10 ASP B 227 SER B 305 ASP B 319 THR B 321 SITE 2 AC4 10 LYS B 362 ARG B 376 LYS B 414 SER B 434 SITE 3 AC4 10 SER B 435 TYR B 436 CRYST1 215.211 47.632 88.365 90.00 110.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004647 0.000000 0.001696 0.00000 SCALE2 0.000000 0.020994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012047 0.00000