HEADER TRANSFERASE 03-APR-17 5VDT TITLE HUMAN CYCLIC GMP-AMP SYNTHASE (CGAS) IN COMPLEX WITH 3',3'-CGAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 6 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, STING, CGAMP EXPDTA X-RAY DIFFRACTION AUTHOR L.J.BYRNES,J.D.HALL REVDAT 4 04-OCT-23 5VDT 1 REMARK HETSYN REVDAT 3 06-DEC-17 5VDT 1 JRNL REVDAT 2 04-OCT-17 5VDT 1 JRNL REVDAT 1 27-SEP-17 5VDT 0 JRNL AUTH J.HALL,E.C.RALPH,S.SHANKER,H.WANG,L.J.BYRNES,R.HORST,J.WONG, JRNL AUTH 2 A.BRAULT,D.DUMLAO,J.F.SMITH,L.A.DAKIN,D.C.SCHMITT, JRNL AUTH 3 J.TRUJILLO,F.VINCENT,M.GRIFFOR,A.E.AULABAUGH JRNL TITL THE CATALYTIC MECHANISM OF CYCLIC GMP-AMP SYNTHASE (CGAS) JRNL TITL 2 AND IMPLICATIONS FOR INNATE IMMUNITY AND INHIBITION. JRNL REF PROTEIN SCI. V. 26 2367 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28940468 JRNL DOI 10.1002/PRO.3304 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 26697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3185 - 5.5484 1.00 2674 151 0.1758 0.1984 REMARK 3 2 5.5484 - 4.4045 1.00 2584 147 0.1614 0.1752 REMARK 3 3 4.4045 - 3.8479 0.99 2559 130 0.1781 0.2198 REMARK 3 4 3.8479 - 3.4962 0.91 2319 139 0.1887 0.2506 REMARK 3 5 3.4962 - 3.2456 0.97 2513 113 0.2280 0.2543 REMARK 3 6 3.2456 - 3.0543 1.00 2536 140 0.2293 0.2694 REMARK 3 7 3.0543 - 2.9013 1.00 2589 122 0.2533 0.3457 REMARK 3 8 2.9013 - 2.7750 1.00 2532 149 0.2658 0.3093 REMARK 3 9 2.7750 - 2.6682 0.99 2516 121 0.2681 0.3324 REMARK 3 10 2.6682 - 2.5761 0.99 2542 121 0.3046 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5909 REMARK 3 ANGLE : 0.647 7972 REMARK 3 CHIRALITY : 0.034 879 REMARK 3 PLANARITY : 0.002 996 REMARK 3 DIHEDRAL : 13.056 2190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5075 -2.4526 -23.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.5686 T22: 0.4169 REMARK 3 T33: 0.3844 T12: 0.0320 REMARK 3 T13: -0.0446 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 2.4809 L22: 3.5633 REMARK 3 L33: 0.9154 L12: 2.0481 REMARK 3 L13: -0.7020 L23: 0.5756 REMARK 3 S TENSOR REMARK 3 S11: -0.1198 S12: -0.6133 S13: -0.8044 REMARK 3 S21: -0.0330 S22: -0.1050 S23: -0.4627 REMARK 3 S31: 0.1151 S32: 0.0527 S33: 0.2156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4758 16.9119 -17.5287 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.6775 REMARK 3 T33: 0.6543 T12: -0.0913 REMARK 3 T13: -0.0863 T23: 0.1049 REMARK 3 L TENSOR REMARK 3 L11: 2.0519 L22: 4.4437 REMARK 3 L33: 3.5028 L12: -2.0251 REMARK 3 L13: -0.9014 L23: 0.4718 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: -0.4910 S13: 0.2618 REMARK 3 S21: 0.4195 S22: -0.0676 S23: -0.9517 REMARK 3 S31: -0.2031 S32: 0.6708 S33: 0.0822 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3978 13.0504 -18.3663 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.4215 REMARK 3 T33: 0.3863 T12: 0.0008 REMARK 3 T13: -0.0885 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.1912 L22: 2.4197 REMARK 3 L33: 3.8025 L12: -0.0983 REMARK 3 L13: -2.1166 L23: -0.1093 REMARK 3 S TENSOR REMARK 3 S11: 0.1236 S12: 0.0166 S13: -0.0039 REMARK 3 S21: 0.0033 S22: -0.0767 S23: -0.4783 REMARK 3 S31: -0.1305 S32: 0.3188 S33: -0.0657 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6902 15.4016 -26.1149 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.2305 REMARK 3 T33: 0.2460 T12: 0.0395 REMARK 3 T13: 0.0185 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.6223 L22: 3.0179 REMARK 3 L33: 5.9114 L12: 0.4096 REMARK 3 L13: 0.8028 L23: -0.3574 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1405 S13: -0.0920 REMARK 3 S21: -0.2359 S22: 0.0627 S23: 0.0381 REMARK 3 S31: -0.0299 S32: 0.1062 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2872 19.1875 23.8093 REMARK 3 T TENSOR REMARK 3 T11: 0.5656 T22: 0.6448 REMARK 3 T33: 0.8633 T12: -0.0460 REMARK 3 T13: 0.0270 T23: 0.2156 REMARK 3 L TENSOR REMARK 3 L11: 2.6864 L22: 3.5012 REMARK 3 L33: 1.0865 L12: -3.0470 REMARK 3 L13: -1.1950 L23: 1.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.5167 S12: -0.1374 S13: 1.2385 REMARK 3 S21: 0.2285 S22: -0.3454 S23: -1.0808 REMARK 3 S31: -0.4363 S32: 0.5598 S33: -0.1969 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9115 -2.4062 17.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.4824 T22: 0.9541 REMARK 3 T33: 0.7329 T12: 0.1555 REMARK 3 T13: 0.0773 T23: 0.2087 REMARK 3 L TENSOR REMARK 3 L11: 4.0432 L22: 6.5814 REMARK 3 L33: 1.0206 L12: 1.2480 REMARK 3 L13: 0.7040 L23: -0.0223 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: 0.5462 S13: -0.0352 REMARK 3 S21: -0.1039 S22: -0.0135 S23: -1.0891 REMARK 3 S31: 0.2002 S32: 0.5891 S33: 0.0642 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6349 1.9418 20.3476 REMARK 3 T TENSOR REMARK 3 T11: 0.3986 T22: 0.6558 REMARK 3 T33: 0.5290 T12: -0.0186 REMARK 3 T13: 0.0153 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 4.0407 L22: 3.6289 REMARK 3 L33: 4.1033 L12: 0.3937 REMARK 3 L13: 2.1629 L23: 0.1364 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.3610 S13: 0.2427 REMARK 3 S21: 0.3548 S22: -0.3841 S23: -0.8103 REMARK 3 S31: 0.2202 S32: 0.4702 S33: 0.1358 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 389 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2787 2.0604 23.7127 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.3110 REMARK 3 T33: 0.3104 T12: -0.0003 REMARK 3 T13: -0.0218 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.4486 L22: 1.5857 REMARK 3 L33: 6.0693 L12: 0.1880 REMARK 3 L13: -1.2477 L23: -0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: -0.0413 S13: 0.0906 REMARK 3 S21: 0.0653 S22: 0.0427 S23: 0.0340 REMARK 3 S31: -0.0366 S32: -0.0687 S33: -0.0877 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3354 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.576 REMARK 200 RESOLUTION RANGE LOW (A) : 55.306 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4O67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 0.2 M AMMONIUM REMARK 280 CITRATE PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.94800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.94800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.98750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 PHE A 522 REMARK 465 SER B 213 REMARK 465 TYR B 214 REMARK 465 TYR B 215 REMARK 465 GLU B 216 REMARK 465 HIS B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 ILE B 220 REMARK 465 SER B 221 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 ARG A 302 NE CZ NH1 NH2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 425 CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 ARG A 499 CD NE CZ NH1 NH2 REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 ASP B 295 CG OD1 OD2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 GLU B 385 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLU B 418 CD OE1 OE2 REMARK 470 LYS B 425 CG CD CE NZ REMARK 470 ASP B 426 CG OD1 OD2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 ARG B 499 CD NE CZ NH1 NH2 REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 418 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 215 38.35 38.70 REMARK 500 HIS A 217 115.89 -161.73 REMARK 500 ARG A 246 -8.45 70.02 REMARK 500 ASP A 293 12.14 -67.99 REMARK 500 LYS A 315 -29.25 -143.17 REMARK 500 SER A 345 153.91 83.27 REMARK 500 PRO A 361 77.19 -69.92 REMARK 500 GLU A 372 3.39 55.76 REMARK 500 PHE A 424 42.10 -107.71 REMARK 500 ARG B 246 -8.85 69.83 REMARK 500 ASP B 293 10.69 54.13 REMARK 500 LYS B 315 -28.39 -143.90 REMARK 500 TRP B 343 -63.60 -109.94 REMARK 500 SER B 345 154.50 83.12 REMARK 500 PHE B 424 42.26 -107.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 120.7 REMARK 620 3 CYS A 397 SG 110.3 121.6 REMARK 620 4 CYS A 404 SG 101.4 97.3 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 115.8 REMARK 620 3 CYS B 397 SG 106.8 127.1 REMARK 620 4 CYS B 404 SG 97.2 102.6 101.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4BW A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4BW B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VDO RELATED DB: PDB REMARK 900 RELATED ID: 5VDP RELATED DB: PDB REMARK 900 RELATED ID: 5VDQ RELATED DB: PDB REMARK 900 RELATED ID: 5VDR RELATED DB: PDB REMARK 900 RELATED ID: 5VDS RELATED DB: PDB REMARK 900 RELATED ID: 5VDU RELATED DB: PDB REMARK 900 RELATED ID: 5VDV RELATED DB: PDB REMARK 900 RELATED ID: 5VDW RELATED DB: PDB DBREF 5VDT A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 5VDT B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQADV 5VDT MET A 160 UNP Q8N884 EXPRESSION TAG SEQADV 5VDT MET B 160 UNP Q8N884 EXPRESSION TAG SEQRES 1 A 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 A 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 A 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 A 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 A 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 A 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 A 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 A 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 A 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 A 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 A 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 A 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 A 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 A 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 A 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 A 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 A 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 A 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 A 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 A 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 A 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 A 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 A 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 A 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 A 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 A 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 B 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 B 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 B 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 B 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 B 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 B 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 B 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 B 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 B 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 B 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 B 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 B 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 B 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 B 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 B 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 B 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 B 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 B 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 B 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 B 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 B 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 B 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 B 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 B 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 B 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 B 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 B 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET 4BW A 602 45 HET ZN B 601 1 HET 4BW B 602 45 HETNAM ZN ZINC ION HETNAM 4BW 2-AMINO-9-[(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-9- HETNAM 2 4BW (6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12- HETNAM 3 4BW DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9, HETNAM 4 4BW 2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO- HETNAM 5 4BW 6H-PURIN-6-ONE HETSYN 4BW 3',3' CGAMP; C-GMP-AMP; C[G(3',5')PA(3',5')P] FORMUL 3 ZN 2(ZN 2+) FORMUL 4 4BW 2(C20 H24 N10 O13 P2) FORMUL 7 HOH *146(H2 O) HELIX 1 AA1 GLY A 161 LEU A 172 1 12 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 LEU A 262 GLN A 264 5 3 HELIX 4 AA4 SER A 272 GLU A 287 1 16 HELIX 5 AA5 PRO A 331 GLN A 335 5 5 HELIX 6 AA6 ILE A 340 SER A 345 1 6 HELIX 7 AA7 SER A 345 ARG A 353 1 9 HELIX 8 AA8 PHE A 379 ASN A 389 1 11 HELIX 9 AA9 ASN A 399 LYS A 403 5 5 HELIX 10 AB1 CYS A 405 PHE A 424 1 20 HELIX 11 AB2 SER A 434 ASN A 449 1 16 HELIX 12 AB3 GLN A 451 LYS A 458 5 8 HELIX 13 AB4 ASP A 459 GLU A 478 1 20 HELIX 14 AB5 ASP A 497 ASN A 514 1 18 HELIX 15 AB6 GLU A 515 ASP A 520 5 6 HELIX 16 AB7 GLY B 161 LYS B 173 1 13 HELIX 17 AB8 SER B 175 LYS B 198 1 24 HELIX 18 AB9 LEU B 262 GLN B 264 5 3 HELIX 19 AC1 SER B 272 GLU B 287 1 16 HELIX 20 AC2 PRO B 331 GLN B 335 5 5 HELIX 21 AC3 ILE B 340 SER B 345 1 6 HELIX 22 AC4 SER B 345 ARG B 353 1 9 HELIX 23 AC5 PHE B 379 ASN B 389 1 11 HELIX 24 AC6 ASN B 399 LYS B 403 5 5 HELIX 25 AC7 CYS B 405 PHE B 424 1 20 HELIX 26 AC8 SER B 434 ASN B 449 1 16 HELIX 27 AC9 GLN B 451 LYS B 458 5 8 HELIX 28 AD1 ASP B 459 GLU B 478 1 20 HELIX 29 AD2 ASP B 497 ASN B 514 1 18 HELIX 30 AD3 GLU B 515 ASP B 520 5 6 SHEET 1 AA1 7 VAL A 206 LEU A 209 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA1 7 PHE A 357 VAL A 360 -1 O PHE A 357 N SER A 326 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 AA2 5 VAL A 206 LEU A 209 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA2 5 ALA A 307 ILE A 312 -1 N ILE A 312 O ILE A 316 SHEET 5 AA2 5 VAL A 296 MET A 298 -1 N ILE A 297 O LEU A 311 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 SHEET 1 AA4 2 LYS A 365 GLU A 366 0 SHEET 2 AA4 2 GLY A 369 PHE A 370 -1 O GLY A 369 N GLU A 366 SHEET 1 AA5 7 VAL B 206 LEU B 209 0 SHEET 2 AA5 7 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA5 7 ILE B 316 SER B 326 1 O SER B 317 N PHE B 226 SHEET 4 AA5 7 PHE B 357 VAL B 360 -1 O PHE B 357 N SER B 326 SHEET 5 AA5 7 TRP B 375 SER B 378 -1 O ARG B 376 N VAL B 360 SHEET 6 AA5 7 TYR B 248 PHE B 253 -1 N TYR B 249 O TRP B 375 SHEET 7 AA5 7 ILE B 237 GLU B 241 -1 N GLN B 238 O LYS B 252 SHEET 1 AA6 5 VAL B 206 LEU B 209 0 SHEET 2 AA6 5 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA6 5 ILE B 316 SER B 326 1 O SER B 317 N PHE B 226 SHEET 4 AA6 5 ALA B 307 ILE B 312 -1 N ILE B 312 O ILE B 316 SHEET 5 AA6 5 VAL B 296 MET B 298 -1 N ILE B 297 O LEU B 311 SHEET 1 AA7 2 LEU B 266 GLU B 267 0 SHEET 2 AA7 2 ILE B 270 LEU B 271 -1 O ILE B 270 N GLU B 267 SHEET 1 AA8 2 ALA B 364 LYS B 365 0 SHEET 2 AA8 2 PHE B 370 GLN B 371 -1 O GLN B 371 N ALA B 364 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.20 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.44 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.29 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.42 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.14 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.36 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.32 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.40 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 SITE 1 AC2 18 ASP A 227 MET A 229 GLY A 304 SER A 305 SITE 2 AC2 18 PRO A 306 ALA A 307 THR A 321 LYS A 362 SITE 3 AC2 18 ARG A 376 SER A 378 SER A 380 SER A 434 SITE 4 AC2 18 TYR A 436 HOH A 712 HOH A 741 HOH A 760 SITE 5 AC2 18 HOH A 761 HOH A 763 SITE 1 AC3 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC4 15 ASP B 227 MET B 229 GLY B 304 PRO B 306 SITE 2 AC4 15 ALA B 307 THR B 321 LYS B 362 ARG B 376 SITE 3 AC4 15 SER B 378 SER B 380 SER B 434 TYR B 436 SITE 4 AC4 15 HOH B 727 HOH B 738 HOH B 748 CRYST1 213.896 47.975 88.274 90.00 110.07 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004675 0.000000 0.001708 0.00000 SCALE2 0.000000 0.020844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012060 0.00000