HEADER TRANSFERASE 03-APR-17 5VDW TITLE HUMAN CYCLIC GMP-AMP SYNTHASE (CGAS) IN COMPLEX WITH COMPOUND F1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 161-521; COMPND 5 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 6 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, STING, CGAMP EXPDTA X-RAY DIFFRACTION AUTHOR L.J.BYRNES,J.D.HALL REVDAT 4 04-OCT-23 5VDW 1 REMARK REVDAT 3 06-DEC-17 5VDW 1 JRNL REVDAT 2 04-OCT-17 5VDW 1 JRNL REVDAT 1 27-SEP-17 5VDW 0 JRNL AUTH J.HALL,E.C.RALPH,S.SHANKER,H.WANG,L.J.BYRNES,R.HORST,J.WONG, JRNL AUTH 2 A.BRAULT,D.DUMLAO,J.F.SMITH,L.A.DAKIN,D.C.SCHMITT, JRNL AUTH 3 J.TRUJILLO,F.VINCENT,M.GRIFFOR,A.E.AULABAUGH JRNL TITL THE CATALYTIC MECHANISM OF CYCLIC GMP-AMP SYNTHASE (CGAS) JRNL TITL 2 AND IMPLICATIONS FOR INNATE IMMUNITY AND INHIBITION. JRNL REF PROTEIN SCI. V. 26 2367 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28940468 JRNL DOI 10.1002/PRO.3304 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.4263 - 5.4195 0.98 2918 139 0.1870 0.1896 REMARK 3 2 5.4195 - 4.3022 0.99 2830 154 0.1750 0.2001 REMARK 3 3 4.3022 - 3.7586 0.99 2850 124 0.1929 0.2585 REMARK 3 4 3.7586 - 3.4150 0.97 2736 140 0.2398 0.3083 REMARK 3 5 3.4150 - 3.1703 0.97 2764 146 0.2794 0.2971 REMARK 3 6 3.1703 - 2.9834 0.98 2738 136 0.2920 0.3240 REMARK 3 7 2.9834 - 2.8340 0.98 2767 136 0.2957 0.3619 REMARK 3 8 2.8340 - 2.7106 0.98 2815 124 0.3148 0.3541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5633 REMARK 3 ANGLE : 0.714 7745 REMARK 3 CHIRALITY : 0.032 863 REMARK 3 PLANARITY : 0.003 1033 REMARK 3 DIHEDRAL : 14.568 2077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6307 7.9924 -20.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.4272 T22: 0.5327 REMARK 3 T33: 0.3643 T12: 0.0989 REMARK 3 T13: 0.0378 T23: 0.0762 REMARK 3 L TENSOR REMARK 3 L11: 1.9574 L22: 1.9284 REMARK 3 L33: 1.7826 L12: -0.4783 REMARK 3 L13: 0.4510 L23: 0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.1265 S12: 0.1984 S13: -0.0589 REMARK 3 S21: -0.0145 S22: -0.2339 S23: -0.2564 REMARK 3 S31: 0.4669 S32: 0.5823 S33: 0.1061 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4497 13.7085 -24.5965 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.7689 REMARK 3 T33: 0.6695 T12: 0.0647 REMARK 3 T13: 0.0380 T23: 0.1395 REMARK 3 L TENSOR REMARK 3 L11: 4.7075 L22: 2.6694 REMARK 3 L33: 6.3770 L12: 0.4375 REMARK 3 L13: 0.5770 L23: 3.0894 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.3892 S13: -0.0805 REMARK 3 S21: 0.1594 S22: -0.1347 S23: -0.7737 REMARK 3 S31: 0.4890 S32: 0.9233 S33: 0.1076 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 520 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.6535 14.8014 -21.1724 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.2060 REMARK 3 T33: 0.2471 T12: -0.0050 REMARK 3 T13: 0.0465 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.5525 L22: 1.2477 REMARK 3 L33: 2.0959 L12: -0.1614 REMARK 3 L13: 0.4459 L23: -0.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.1083 S13: -0.0078 REMARK 3 S21: 0.0436 S22: -0.0562 S23: -0.0765 REMARK 3 S31: -0.0011 S32: 0.2378 S33: 0.0422 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0789 16.3460 20.8911 REMARK 3 T TENSOR REMARK 3 T11: 0.5403 T22: 0.6917 REMARK 3 T33: 0.9884 T12: -0.0890 REMARK 3 T13: 0.0226 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 2.5762 L22: 0.0752 REMARK 3 L33: 0.1997 L12: -0.1724 REMARK 3 L13: -0.2376 L23: -0.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.6297 S12: 0.3053 S13: 0.4139 REMARK 3 S21: 0.0339 S22: 0.1193 S23: -0.6383 REMARK 3 S31: -0.0703 S32: 0.4378 S33: 0.4532 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2704 1.1666 19.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.3215 T22: 0.7754 REMARK 3 T33: 0.8308 T12: 0.0236 REMARK 3 T13: 0.0027 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.3757 L22: 4.5950 REMARK 3 L33: 2.8081 L12: 1.0122 REMARK 3 L13: 0.8329 L23: -0.0473 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0244 S13: 0.1977 REMARK 3 S21: 0.0065 S22: -0.1031 S23: -0.8673 REMARK 3 S31: -0.3309 S32: 0.8917 S33: 0.0426 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 308 THROUGH 520 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4933 1.1970 20.3629 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.2698 REMARK 3 T33: 0.3380 T12: -0.0108 REMARK 3 T13: -0.0029 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.9035 L22: 1.9009 REMARK 3 L33: 2.5978 L12: -0.2012 REMARK 3 L13: -0.5436 L23: -0.5814 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.1845 S13: 0.0448 REMARK 3 S21: 0.1040 S22: 0.0242 S23: -0.1756 REMARK 3 S31: 0.0079 S32: 0.3609 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3311 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 52.417 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4O67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 0.2 M AMMONIUM REMARK 280 CITRATE PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 108.68000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.99900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 108.68000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.99900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 160 REMARK 465 GLU A 521 REMARK 465 PHE A 522 REMARK 465 MET B 160 REMARK 465 GLU B 521 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 MET A 185 CG SD CE REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LEU A 266 CG CD1 CD2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ILE A 284 CG1 CG2 CD1 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 MET A 298 CG SD CE REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 SER A 305 OG REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 ASN A 368 CG OD1 ND2 REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 422 CG CD OE1 OE2 REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 LEU B 174 CG CD1 CD2 REMARK 470 SER B 175 OG REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 ILE B 179 CG1 CG2 CD1 REMARK 470 MET B 185 CG SD CE REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 HIS B 192 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 195 CG CD1 CD2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 ILE B 220 CG1 CG2 CD1 REMARK 470 SER B 221 OG REMARK 470 ASN B 224 CG OD1 ND2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ARG B 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 THR B 294 OG1 CG2 REMARK 470 MET B 298 CG SD CE REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 SER B 305 OG REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 ASP B 319 CG OD1 OD2 REMARK 470 LEU B 322 CG CD1 CD2 REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 GLU B 366 CG CD OE1 OE2 REMARK 470 ASN B 368 CG OD1 ND2 REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 ASP B 426 CG OD1 OD2 REMARK 470 LYS B 427 CG CD CE NZ REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 ASP B 431 CG OD1 OD2 REMARK 470 LYS B 432 CG CD CE NZ REMARK 470 ARG B 499 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 203 34.24 -98.40 REMARK 500 ARG A 246 -10.90 69.11 REMARK 500 LYS A 258 39.94 -82.24 REMARK 500 ARG A 302 -48.25 -136.12 REMARK 500 LYS A 315 -59.76 -137.60 REMARK 500 TRP A 343 -67.17 -103.54 REMARK 500 SER A 345 163.66 88.34 REMARK 500 GLU A 402 58.36 -116.09 REMARK 500 PHE A 516 71.71 41.87 REMARK 500 PHE B 203 33.44 -99.70 REMARK 500 SER B 221 -0.28 71.52 REMARK 500 ARG B 246 -10.40 68.06 REMARK 500 LYS B 258 39.65 -83.15 REMARK 500 ARG B 302 -48.65 -137.77 REMARK 500 LYS B 315 -61.03 -138.01 REMARK 500 TRP B 343 -67.95 -103.37 REMARK 500 SER B 345 162.96 89.23 REMARK 500 LYS B 365 97.65 -64.83 REMARK 500 GLU B 402 59.70 -117.47 REMARK 500 PHE B 516 71.56 42.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 125.3 REMARK 620 3 CYS A 397 SG 100.3 119.1 REMARK 620 4 CYS A 404 SG 96.2 111.6 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 121.9 REMARK 620 3 CYS B 397 SG 99.7 120.7 REMARK 620 4 CYS B 404 SG 98.8 112.6 98.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9BY A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9BY B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VDO RELATED DB: PDB REMARK 900 RELATED ID: 5VDP RELATED DB: PDB REMARK 900 RELATED ID: 5VDQ RELATED DB: PDB REMARK 900 RELATED ID: 5VDR RELATED DB: PDB REMARK 900 RELATED ID: 5VDS RELATED DB: PDB REMARK 900 RELATED ID: 5VDT RELATED DB: PDB REMARK 900 RELATED ID: 5VDU RELATED DB: PDB REMARK 900 RELATED ID: 5VDV RELATED DB: PDB DBREF 5VDW A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 5VDW B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQADV 5VDW MET A 160 UNP Q8N884 EXPRESSION TAG SEQADV 5VDW MET B 160 UNP Q8N884 EXPRESSION TAG SEQRES 1 A 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 A 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 A 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 A 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 A 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 A 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 A 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 A 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 A 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 A 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 A 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 A 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 A 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 A 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 A 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 A 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 A 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 A 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 A 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 A 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 A 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 A 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 A 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 A 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 A 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 A 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 B 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 B 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 B 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 B 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 B 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 B 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 B 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 B 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 B 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 B 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 B 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 B 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 B 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 B 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 B 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 B 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 B 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 B 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 B 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 B 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 B 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 B 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 B 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 B 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 B 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 B 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 B 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET 9BY A 602 18 HET ZN B 601 1 HET 9BY B 602 18 HETNAM ZN ZINC ION HETNAM 9BY [2-(1,3-THIAZOL-4-YL)-1H-BENZIMIDAZOL-1-YL]ACETIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 9BY 2(C12 H9 N3 O2 S) FORMUL 7 HOH *36(H2 O) HELIX 1 AA1 GLY A 161 LYS A 173 1 13 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 LEU A 262 GLN A 264 5 3 HELIX 4 AA4 SER A 272 ILE A 291 1 20 HELIX 5 AA5 PRO A 331 GLN A 335 5 5 HELIX 6 AA6 SER A 345 LEU A 354 1 10 HELIX 7 AA7 PHE A 379 ASN A 388 1 10 HELIX 8 AA8 CYS A 405 PHE A 424 1 20 HELIX 9 AA9 SER A 434 ASN A 449 1 16 HELIX 10 AB1 GLN A 451 LYS A 458 5 8 HELIX 11 AB2 ASP A 459 GLU A 478 1 20 HELIX 12 AB3 ASP A 497 ASN A 514 1 18 HELIX 13 AB4 GLU A 515 ASP A 520 5 6 HELIX 14 AB5 ALA B 162 LYS B 173 1 12 HELIX 15 AB6 SER B 175 LYS B 198 1 24 HELIX 16 AB7 LEU B 262 GLN B 264 5 3 HELIX 17 AB8 SER B 272 ILE B 291 1 20 HELIX 18 AB9 PRO B 331 GLN B 335 5 5 HELIX 19 AC1 SER B 345 LEU B 354 1 10 HELIX 20 AC2 PHE B 379 ASN B 388 1 10 HELIX 21 AC3 ASN B 399 LYS B 403 5 5 HELIX 22 AC4 CYS B 405 PHE B 424 1 20 HELIX 23 AC5 HIS B 429 PHE B 433 5 5 HELIX 24 AC6 SER B 434 ASN B 449 1 16 HELIX 25 AC7 GLN B 451 LYS B 458 5 8 HELIX 26 AC8 ASP B 459 THR B 477 1 19 HELIX 27 AC9 ASP B 497 ASN B 514 1 18 HELIX 28 AD1 GLU B 515 ASP B 520 5 6 SHEET 1 AA1 7 VAL A 206 LEU A 209 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O GLU A 325 N LEU A 232 SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O PHE A 357 N SER A 326 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLU A 240 O PHE A 250 SHEET 1 AA2 5 VAL A 206 LEU A 209 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O GLU A 325 N LEU A 232 SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N LEU A 310 O VAL A 318 SHEET 5 AA2 5 VAL A 296 MET A 298 -1 N ILE A 297 O LEU A 311 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 SHEET 1 AA4 7 GLY B 207 LEU B 209 0 SHEET 2 AA4 7 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA4 7 ILE B 316 SER B 326 1 O GLU B 325 N LEU B 232 SHEET 4 AA4 7 PHE B 357 PRO B 361 -1 O PHE B 357 N SER B 326 SHEET 5 AA4 7 TRP B 375 SER B 378 -1 O ARG B 376 N VAL B 360 SHEET 6 AA4 7 TYR B 248 PHE B 253 -1 N TYR B 249 O TRP B 375 SHEET 7 AA4 7 ILE B 237 GLU B 241 -1 N GLN B 238 O LYS B 252 SHEET 1 AA5 5 GLY B 207 LEU B 209 0 SHEET 2 AA5 5 GLU B 225 GLU B 233 -1 O MET B 229 N LEU B 209 SHEET 3 AA5 5 ILE B 316 SER B 326 1 O GLU B 325 N LEU B 232 SHEET 4 AA5 5 VAL B 308 ILE B 312 -1 N ILE B 312 O ILE B 316 SHEET 5 AA5 5 VAL B 296 MET B 298 -1 N ILE B 297 O LEU B 311 SHEET 1 AA6 2 LEU B 266 GLU B 267 0 SHEET 2 AA6 2 ILE B 270 LEU B 271 -1 O ILE B 270 N GLU B 267 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.22 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.43 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.33 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.09 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.37 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.34 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.34 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 SITE 1 AC2 7 ARG A 376 LEU A 377 SER A 378 SER A 434 SITE 2 AC2 7 TYR A 436 ASN A 482 PHE A 488 SITE 1 AC3 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC4 8 ARG B 376 LEU B 377 SER B 378 SER B 434 SITE 2 AC4 8 TYR B 436 ASN B 482 PHE B 488 LEU B 490 CRYST1 217.360 47.998 86.861 90.00 105.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004601 0.000000 0.001258 0.00000 SCALE2 0.000000 0.020834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011935 0.00000