HEADER TRANSFERASE 04-APR-17 5VE7 TITLE CRYSTAL STRUCTURE OF UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE FROM TITLE 2 BURKHOLDERIA AMBIFARIA IN COMPLEX WITH UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BUAMA.00118.A.B1; COMPND 5 SYNONYM: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA (STRAIN MC40-6); SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: BAMMC406_1359; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUAMA.00116.A.B1 KEYWDS SSGCID, BURKHOLDERIA AMBIFARIA, UTP-GLUCOSE-1-PHOSPHATE KEYWDS 2 URIDYLYLTRANSFERASE, UTP, ALPHA-D-GLUCOSE, 1-PHOSPHATE, DIPHOSPHATE, KEYWDS 3 UDP-GLUCOSE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 4 FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5VE7 1 REMARK REVDAT 2 13-DEC-17 5VE7 1 CAVEAT REVDAT 1 12-APR-17 5VE7 0 JRNL AUTH J.ABENDROTH,T.W.HIGGINS,D.M.DRANOW,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF UTP-GLUCOSE-1-PHOSPHATE JRNL TITL 2 URIDYLYLTRANSFERASE FROM BURKHOLDERIA AMBIFARIA IN COMPLEX JRNL TITL 3 WITH UTP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0975 - 5.5387 1.00 1338 151 0.1832 0.2010 REMARK 3 2 5.5387 - 4.3981 1.00 1287 136 0.1324 0.1435 REMARK 3 3 4.3981 - 3.8427 0.99 1269 122 0.1476 0.1906 REMARK 3 4 3.8427 - 3.4916 1.00 1251 124 0.1778 0.2258 REMARK 3 5 3.4916 - 3.2415 1.00 1254 144 0.1763 0.2053 REMARK 3 6 3.2415 - 3.0505 1.00 1235 130 0.1821 0.2403 REMARK 3 7 3.0505 - 2.8977 1.00 1255 141 0.1931 0.2155 REMARK 3 8 2.8977 - 2.7716 1.00 1210 141 0.1855 0.2376 REMARK 3 9 2.7716 - 2.6650 1.00 1250 133 0.1943 0.3099 REMARK 3 10 2.6650 - 2.5730 1.00 1241 133 0.2003 0.2744 REMARK 3 11 2.5730 - 2.4926 1.00 1237 130 0.2081 0.2536 REMARK 3 12 2.4926 - 2.4213 1.00 1197 154 0.2005 0.2785 REMARK 3 13 2.4213 - 2.3576 1.00 1216 156 0.2253 0.3198 REMARK 3 14 2.3576 - 2.3001 0.94 1143 137 0.2752 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2234 REMARK 3 ANGLE : 0.892 3046 REMARK 3 CHIRALITY : 0.053 353 REMARK 3 PLANARITY : 0.006 397 REMARK 3 DIHEDRAL : 13.953 1360 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0721 -9.2817 -14.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.2477 REMARK 3 T33: 0.2244 T12: 0.0385 REMARK 3 T13: 0.0038 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.1745 L22: 3.1835 REMARK 3 L33: 1.3701 L12: 0.9550 REMARK 3 L13: -0.5875 L23: -0.3076 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0504 S13: -0.1396 REMARK 3 S21: -0.3109 S22: -0.0139 S23: -0.1569 REMARK 3 S31: 0.0879 S32: 0.1010 S33: 0.0291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4673 -12.4124 -10.1783 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.2422 REMARK 3 T33: 0.2021 T12: 0.0498 REMARK 3 T13: 0.0647 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.6000 L22: 4.9210 REMARK 3 L33: 4.3758 L12: -0.5496 REMARK 3 L13: 1.7414 L23: 0.8967 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: -0.0215 S13: 0.0189 REMARK 3 S21: 0.1518 S22: 0.0617 S23: 0.1960 REMARK 3 S31: -0.2603 S32: -0.1729 S33: 0.1506 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1268 -3.3000 -9.2694 REMARK 3 T TENSOR REMARK 3 T11: 0.5066 T22: 0.6963 REMARK 3 T33: 0.7184 T12: 0.2029 REMARK 3 T13: 0.1617 T23: 0.2378 REMARK 3 L TENSOR REMARK 3 L11: 2.8011 L22: 6.1940 REMARK 3 L33: 1.7932 L12: -2.8193 REMARK 3 L13: 0.8026 L23: -1.3487 REMARK 3 S TENSOR REMARK 3 S11: -0.8017 S12: -0.6679 S13: -0.0616 REMARK 3 S21: 1.3807 S22: 1.4911 S23: 1.8062 REMARK 3 S31: -0.3671 S32: -1.0857 S33: -0.3842 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1311 -18.1807 -4.9514 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.2058 REMARK 3 T33: 0.2607 T12: 0.0548 REMARK 3 T13: 0.0199 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 5.7815 L22: 5.6599 REMARK 3 L33: 4.7420 L12: 0.4134 REMARK 3 L13: 0.1221 L23: -0.5289 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.3777 S13: -0.1239 REMARK 3 S21: 0.3070 S22: -0.0648 S23: 0.0959 REMARK 3 S31: 0.3558 S32: 0.2293 S33: -0.0257 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4245 -24.8573 -22.5612 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.1664 REMARK 3 T33: 0.2883 T12: 0.0060 REMARK 3 T13: -0.0303 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 3.6661 L22: 1.0172 REMARK 3 L33: 1.6080 L12: 0.0198 REMARK 3 L13: -0.2303 L23: 0.8525 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0675 S13: -0.3774 REMARK 3 S21: -0.0414 S22: -0.0081 S23: 0.0491 REMARK 3 S31: 0.2504 S32: -0.1617 S33: 0.0264 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0936 -32.3253 -27.1979 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.3067 REMARK 3 T33: 0.4996 T12: 0.1102 REMARK 3 T13: 0.0875 T23: -0.1139 REMARK 3 L TENSOR REMARK 3 L11: 3.4072 L22: 8.4699 REMARK 3 L33: 4.3259 L12: 4.8313 REMARK 3 L13: 0.9733 L23: -0.3376 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.3158 S13: -0.8303 REMARK 3 S21: -0.4587 S22: -0.2401 S23: -0.0209 REMARK 3 S31: 0.5977 S32: -0.1749 S33: 0.1934 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4864 -26.2567 -19.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.2929 REMARK 3 T33: 0.3234 T12: 0.0373 REMARK 3 T13: -0.0238 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 4.1668 L22: 2.0559 REMARK 3 L33: 2.9235 L12: 0.4134 REMARK 3 L13: -2.8944 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.4311 S13: -0.5057 REMARK 3 S21: 0.2576 S22: -0.0718 S23: -0.1251 REMARK 3 S31: 0.1976 S32: 0.4612 S33: 0.1402 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3476 -27.6861 -13.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.3991 T22: 0.5250 REMARK 3 T33: 0.5001 T12: 0.1639 REMARK 3 T13: -0.0547 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 6.2742 L22: 2.5128 REMARK 3 L33: 6.5964 L12: 1.1718 REMARK 3 L13: -1.6497 L23: 3.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.3380 S12: 0.1444 S13: -0.4506 REMARK 3 S21: 0.5435 S22: 0.0964 S23: -1.2139 REMARK 3 S31: 0.0476 S32: 0.4468 S33: -0.5128 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1063 -22.7570 -25.9064 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.3068 REMARK 3 T33: 0.2909 T12: 0.0158 REMARK 3 T13: 0.0381 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 2.5166 L22: 7.1536 REMARK 3 L33: 1.7099 L12: -0.2789 REMARK 3 L13: -0.7124 L23: 1.5743 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.2842 S13: -0.3986 REMARK 3 S21: -0.0062 S22: 0.2844 S23: -0.0639 REMARK 3 S31: -0.1263 S32: 0.0082 S33: -0.1089 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5675 -2.2338 -32.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.6041 T22: 0.3608 REMARK 3 T33: 0.2675 T12: 0.0448 REMARK 3 T13: -0.0861 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 6.8865 L22: 4.8123 REMARK 3 L33: 6.1160 L12: -1.1772 REMARK 3 L13: -0.2697 L23: -0.9886 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.3100 S13: -0.1847 REMARK 3 S21: -1.1867 S22: -0.1302 S23: 0.6252 REMARK 3 S31: -0.0261 S32: -0.5184 S33: 0.0339 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.07 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIKGAU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.055 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.16 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NATIVE STRUCTURE, 5VCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZATION SCREEN AROUND REMARK 280 RIGAKUREAGENTS JCSG B9: 100MM SODIUM CITRATE / CITRIC ACID PH REMARK 280 5.07, 18.73% PEG 6000, BUAMA.00118.A.B1.PS37963 AT 45.5 MG/ML + REMARK 280 3MM GTP (BSI1746) + 3MM GLUCOSE-1-PHOSPHATE (BSI 1952) + 3MM REMARK 280 MGCL2, TRAY 289280H3: CRYO: 25% EG IN 3 STEPS: PUCK KZJ0-7., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.62500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.24000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.25500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.62500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.24000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.62500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.24000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.62500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.24000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NE ARG A 62 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 GLY A 227 REMARK 465 GLY A 288 REMARK 465 ASN A 289 REMARK 465 ALA A 290 REMARK 465 HIS A 291 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LEU A 229 CG CD1 CD2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 161 O HOH A 401 2.08 REMARK 500 O SER A 96 O HOH A 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 -82.78 69.08 REMARK 500 ALA A 123 -132.42 60.34 REMARK 500 ASP A 124 65.06 -104.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 593 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UTP A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUAMA.00118.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5VCT RELATED DB: PDB REMARK 900 APO STRUCTURE DBREF 5VE7 A 1 294 UNP B1YNX3 B1YNX3_BURA4 1 294 SEQADV 5VE7 MET A -7 UNP B1YNX3 INITIATING METHIONINE SEQADV 5VE7 ALA A -6 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A -5 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A -4 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A -3 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A -2 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A -1 UNP B1YNX3 EXPRESSION TAG SEQADV 5VE7 HIS A 0 UNP B1YNX3 EXPRESSION TAG SEQRES 1 A 302 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS VAL ASN SEQRES 2 A 302 LYS ALA VAL PHE PRO VAL ALA GLY LEU GLY THR ARG PHE SEQRES 3 A 302 LEU PRO ALA THR LYS ALA SER PRO LYS GLU MET LEU PRO SEQRES 4 A 302 VAL VAL ASP LYS PRO LEU ILE GLN TYR ALA VAL GLU GLU SEQRES 5 A 302 ALA ILE ALA ALA GLY ILE THR GLU MET ILE PHE VAL THR SEQRES 6 A 302 GLY ARG SER LYS ARG ALA ILE GLU ASP HIS PHE ASP LYS SEQRES 7 A 302 SER TYR GLU VAL GLU ALA GLU LEU GLU ALA ARG GLY LYS SEQRES 8 A 302 ALA LYS LEU LEU GLU LEU VAL ARG SER ILE LYS PRO SER SEQRES 9 A 302 HIS VAL ASP CYS PHE TYR VAL ARG GLN PRO GLU ALA LEU SEQRES 10 A 302 GLY LEU GLY HIS ALA VAL LEU CYS ALA GLU LYS LEU VAL SEQRES 11 A 302 ALA ASP ASN PRO PHE ALA VAL ILE LEU ALA ASP ASP LEU SEQRES 12 A 302 LEU ASP GLY ASN PRO PRO VAL MET LYS GLN MET VAL ASP SEQRES 13 A 302 VAL PHE ASP HIS TYR HIS SER SER VAL ILE GLY VAL GLU SEQRES 14 A 302 GLU ILE PRO PRO SER GLU THR LYS SER TYR GLY ILE VAL SEQRES 15 A 302 ASP GLY LYS GLU TRP GLU GLU SER ILE VAL LYS MET SER SEQRES 16 A 302 ALA ILE VAL GLU LYS PRO ALA PRO GLU VAL ALA PRO SER SEQRES 17 A 302 ASN LEU GLY VAL VAL GLY ARG TYR ILE LEU LYS PRO ARG SEQRES 18 A 302 ILE PHE GLU HIS LEU ARG ALA LEU LYS PRO GLY ALA GLY SEQRES 19 A 302 GLY GLU LEU GLN LEU THR ASP ALA ILE GLN ALA LEU LEU SEQRES 20 A 302 ALA ASP GLU GLN VAL LEU ALA TYR LYS TYR GLN GLY THR SEQRES 21 A 302 ARG TYR ASP CYS GLY SER LYS LEU GLY TYR LEU LYS ALA SEQRES 22 A 302 THR VAL GLU PHE ALA LEU ARG HIS PRO GLU VAL GLY THR SEQRES 23 A 302 GLU PHE ASP ALA TYR LEU ARG THR ARG GLY ASN ALA HIS SEQRES 24 A 302 PRO ALA ALA HET UTP A 300 29 HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 2 UTP C9 H15 N2 O15 P3 FORMUL 3 HOH *193(H2 O) HELIX 1 AA1 GLY A 15 LEU A 19 5 5 HELIX 2 AA2 PRO A 20 ALA A 24 5 5 HELIX 3 AA3 PRO A 26 MET A 29 5 4 HELIX 4 AA4 LEU A 37 ALA A 48 1 12 HELIX 5 AA5 SER A 60 ASP A 69 1 10 HELIX 6 AA6 SER A 71 ALA A 80 1 10 HELIX 7 AA7 LYS A 83 SER A 92 1 10 HELIX 8 AA8 GLY A 110 ALA A 118 1 9 HELIX 9 AA9 ALA A 118 ALA A 123 1 6 HELIX 10 AB1 PRO A 141 HIS A 154 1 14 HELIX 11 AB2 PRO A 164 SER A 170 5 7 HELIX 12 AB3 ALA A 194 ALA A 198 5 5 HELIX 13 AB4 ARG A 213 LEU A 221 1 9 HELIX 14 AB5 GLN A 230 GLU A 242 1 13 HELIX 15 AB6 SER A 258 ARG A 272 1 15 HELIX 16 AB7 VAL A 276 ARG A 287 1 12 SHEET 1 AA110 ASP A 99 ARG A 104 0 SHEET 2 AA110 GLU A 52 THR A 57 1 N MET A 53 O ASP A 99 SHEET 3 AA110 LYS A 6 VAL A 11 1 N PHE A 9 O ILE A 54 SHEET 4 AA110 PHE A 127 ILE A 130 1 O ALA A 128 N VAL A 8 SHEET 5 AA110 LEU A 202 LEU A 210 -1 O LEU A 210 N PHE A 127 SHEET 6 AA110 GLY A 172 GLU A 178 -1 N GLY A 172 O VAL A 204 SHEET 7 AA110 ILE A 183 GLU A 191 -1 O VAL A 190 N ILE A 173 SHEET 8 AA110 VAL A 244 LYS A 248 -1 O ALA A 246 N VAL A 184 SHEET 9 AA110 SER A 156 GLU A 162 1 N ILE A 158 O TYR A 247 SHEET 10 AA110 LEU A 202 LEU A 210 -1 O GLY A 203 N GLU A 161 SHEET 1 AA2 2 PRO A 31 VAL A 32 0 SHEET 2 AA2 2 LYS A 35 PRO A 36 -1 O LYS A 35 N VAL A 32 SHEET 1 AA3 2 ASP A 134 ASP A 137 0 SHEET 2 AA3 2 THR A 252 ASP A 255 -1 O THR A 252 N ASP A 137 CISPEP 1 LEU A 19 PRO A 20 0 5.52 CISPEP 2 ASN A 139 PRO A 140 0 0.11 SITE 1 AC1 24 PRO A 10 VAL A 11 ALA A 12 GLY A 13 SITE 2 AC1 24 LEU A 14 GLY A 15 THR A 16 ARG A 17 SITE 3 AC1 24 LYS A 27 GLU A 28 GLN A 105 ALA A 108 SITE 4 AC1 24 LEU A 109 GLY A 110 LEU A 111 ALA A 114 SITE 5 AC1 24 HOH A 420 HOH A 421 HOH A 429 HOH A 439 SITE 6 AC1 24 HOH A 440 HOH A 441 HOH A 450 HOH A 463 CRYST1 63.250 108.480 124.510 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008031 0.00000