HEADER HYDROLASE 05-APR-17 5VEO TITLE MURINE ECTONUCLEOTIDE PYROPHOSPHATASE / PHOSPHODIESTERASE 5 (ENPP5, TITLE 2 NPP5), INACTIVE (T72A), IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 5; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 25-430; COMPND 6 SYNONYM: NPP-5; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ENPP5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,A.RANDRIAMIHAJA,K.ILLES,B.NAGAR REVDAT 4 29-JUL-20 5VEO 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JAN-20 5VEO 1 REMARK REVDAT 2 22-NOV-17 5VEO 1 JRNL REVDAT 1 20-SEP-17 5VEO 0 JRNL AUTH A.GORELIK,A.RANDRIAMIHAJA,K.ILLES,B.NAGAR JRNL TITL A KEY TYROSINE SUBSTITUTION RESTRICTS NUCLEOTIDE HYDROLYSIS JRNL TITL 2 BY THE ECTOENZYME NPP5. JRNL REF FEBS J. V. 284 3718 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28898552 JRNL DOI 10.1111/FEBS.14266 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 141553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.460 REMARK 3 FREE R VALUE TEST SET COUNT : 3478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9881 - 4.4704 1.00 6901 174 0.1612 0.1797 REMARK 3 2 4.4704 - 3.5496 1.00 6928 171 0.1146 0.1430 REMARK 3 3 3.5496 - 3.1013 1.00 6899 180 0.1207 0.1240 REMARK 3 4 3.1013 - 2.8179 1.00 6908 177 0.1147 0.1616 REMARK 3 5 2.8179 - 2.6161 1.00 6931 169 0.1076 0.1535 REMARK 3 6 2.6161 - 2.4619 1.00 6910 175 0.1010 0.1134 REMARK 3 7 2.4619 - 2.3386 1.00 6893 168 0.0930 0.1241 REMARK 3 8 2.3386 - 2.2368 1.00 6954 171 0.0880 0.1235 REMARK 3 9 2.2368 - 2.1507 1.00 6887 167 0.0850 0.1319 REMARK 3 10 2.1507 - 2.0765 1.00 6934 174 0.0861 0.1119 REMARK 3 11 2.0765 - 2.0116 1.00 6861 177 0.0859 0.1224 REMARK 3 12 2.0116 - 1.9541 1.00 6924 180 0.0931 0.1210 REMARK 3 13 1.9541 - 1.9027 1.00 6925 176 0.0994 0.1386 REMARK 3 14 1.9027 - 1.8563 1.00 6894 176 0.1044 0.1483 REMARK 3 15 1.8563 - 1.8141 1.00 6924 170 0.1112 0.1662 REMARK 3 16 1.8141 - 1.7755 0.97 6690 172 0.1240 0.1660 REMARK 3 17 1.7755 - 1.7400 0.87 6005 157 0.1338 0.1681 REMARK 3 18 1.7400 - 1.7071 0.80 5534 136 0.1361 0.2004 REMARK 3 19 1.7071 - 1.6766 0.72 4908 127 0.1465 0.1886 REMARK 3 20 1.6766 - 1.6482 0.56 3910 95 0.1597 0.1874 REMARK 3 21 1.6482 - 1.6216 0.42 2861 72 0.1771 0.1717 REMARK 3 22 1.6216 - 1.5967 0.27 1897 50 0.1668 0.2228 REMARK 3 23 1.5967 - 1.5732 0.18 1223 28 0.1642 0.2422 REMARK 3 24 1.5732 - 1.5510 0.12 796 20 0.1693 0.2411 REMARK 3 25 1.5510 - 1.5301 0.08 578 16 0.1888 0.1747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3445 REMARK 3 ANGLE : 1.157 4715 REMARK 3 CHIRALITY : 0.060 538 REMARK 3 PLANARITY : 0.008 574 REMARK 3 DIHEDRAL : 12.486 2001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9768 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93929 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 200, NAD+, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.19733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.59867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.89800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.29933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 246.49667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 197.19733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.59867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.29933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.89800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 246.49667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2P AMP A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 957 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 15 REMARK 465 ARG A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 LYS A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 SER A 401 REMARK 465 ALA A 402 REMARK 465 THR A 403 REMARK 465 PRO A 404 REMARK 465 LYS A 405 REMARK 465 PRO A 406 REMARK 465 ILE A 407 REMARK 465 PRO A 408 REMARK 465 TYR A 409 REMARK 465 THR A 410 REMARK 465 GLN A 411 REMARK 465 SER A 412 REMARK 465 THR A 413 REMARK 465 THR A 414 REMARK 465 LEU A 415 REMARK 465 LEU A 416 REMARK 465 LEU A 417 REMARK 465 GLY A 418 REMARK 465 SER A 419 REMARK 465 ASP A 420 REMARK 465 LYS A 421 REMARK 465 PRO A 422 REMARK 465 GLY A 423 REMARK 465 GLU A 424 REMARK 465 ASP A 425 REMARK 465 GLU A 426 REMARK 465 GLN A 427 REMARK 465 GLU A 428 REMARK 465 GLU A 429 REMARK 465 SER A 430 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 115 O HOH A 608 1.50 REMARK 500 HG1 THR A 242 OE1 GLU A 347 1.52 REMARK 500 ZN ZN A 503 HO3' AMP A 524 1.53 REMARK 500 O HOH A 607 O HOH A 948 1.94 REMARK 500 O HOH A 967 O HOH A 1020 1.96 REMARK 500 OE2 GLU A 27 O HOH A 601 1.97 REMARK 500 O HOH A 1041 O HOH A 1067 1.99 REMARK 500 O HOH A 884 O HOH A 946 2.03 REMARK 500 O HOH A 765 O HOH A 905 2.06 REMARK 500 O HOH A 624 O HOH A 766 2.08 REMARK 500 O HOH A 628 O HOH A 1038 2.11 REMARK 500 O HOH A 931 O HOH A 954 2.11 REMARK 500 O HOH A 603 O HOH A 967 2.12 REMARK 500 O HOH A 755 O HOH A 930 2.13 REMARK 500 O HOH A 893 O HOH A 991 2.13 REMARK 500 O HOH A 860 O HOH A 1040 2.15 REMARK 500 OD2 ASP A 196 O HOH A 602 2.15 REMARK 500 O HOH A 739 O HOH A 874 2.16 REMARK 500 O HOH A 1043 O HOH A 1056 2.16 REMARK 500 O HOH A 602 O HOH A 988 2.17 REMARK 500 O HOH A 1012 O HOH A 1024 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P AMP A 525 O2P AMP A 525 12554 1.52 REMARK 500 O HOH A 918 O HOH A 1010 12564 2.03 REMARK 500 O HOH A 989 O HOH A 1003 12564 2.04 REMARK 500 O HOH A 884 O HOH A 1038 12564 2.08 REMARK 500 O HOH A 628 O HOH A 628 12564 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 110 66.62 -102.63 REMARK 500 HIS A 266 -65.99 -95.36 REMARK 500 ASP A 342 124.74 -30.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1072 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1073 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1075 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1076 DISTANCE = 6.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 ASP A 238 OD2 109.4 REMARK 620 3 HIS A 239 NE2 114.5 93.7 REMARK 620 4 AMP A 524 O3P 105.3 127.0 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 159 OE2 REMARK 620 2 ASP A 192 OD1 123.3 REMARK 620 3 AMP A 524 O3' 127.9 82.5 REMARK 620 4 HOH A 603 O 59.5 85.4 167.9 REMARK 620 5 HOH A 607 O 73.3 122.0 134.5 54.1 REMARK 620 6 HOH A 948 O 116.9 106.7 91.5 92.5 47.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD1 REMARK 620 2 ASP A 191 OD2 55.9 REMARK 620 3 HIS A 195 NE2 101.7 90.6 REMARK 620 4 HIS A 339 NE2 95.1 150.6 101.1 REMARK 620 5 AMP A 524 O2P 133.9 97.3 116.6 101.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VEM RELATED DB: PDB REMARK 900 RELATED ID: 5VEN RELATED DB: PDB DBREF 5VEO A 25 430 UNP Q9EQG7 ENPP5_MOUSE 25 430 SEQADV 5VEO ASP A 15 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO ARG A 16 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 17 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 18 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 19 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 20 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 21 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO HIS A 22 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO LYS A 23 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO LEU A 24 UNP Q9EQG7 EXPRESSION TAG SEQADV 5VEO ALA A 72 UNP Q9EQG7 THR 72 ENGINEERED MUTATION SEQRES 1 A 416 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU PRO GLU GLU SEQRES 2 A 416 GLN LYS VAL LEU VAL VAL SER PHE ASP GLY PHE ARG TRP SEQRES 3 A 416 ASP TYR LEU TYR LYS VAL PRO THR PRO HIS PHE HIS TYR SEQRES 4 A 416 ILE MET LYS ASN GLY VAL HIS VAL ASN GLN VAL THR ASN SEQRES 5 A 416 VAL PHE ILE THR LYS ALA TYR PRO ASN HIS TYR THR LEU SEQRES 6 A 416 VAL THR GLY LEU PHE ALA GLU ASN HIS GLY ILE VAL ALA SEQRES 7 A 416 ASN ASP MET PHE ASP PRO ILE LEU ASN LYS SER PHE SER SEQRES 8 A 416 LEU GLU HIS MET ASP ILE TYR ASP SER LYS PHE TRP GLU SEQRES 9 A 416 GLU ALA THR PRO ILE TRP ILE THR ASN GLN ARG ALA GLY SEQRES 10 A 416 HIS ALA SER GLY ALA ALA MET TRP PRO GLY ALA ASP VAL SEQRES 11 A 416 LYS ILE HIS ASP SER PHE PRO THR TYR TYR LEU PRO TYR SEQRES 12 A 416 ASN GLU SER VAL SER PHE GLU ASP ARG VAL ALA LYS ILE SEQRES 13 A 416 ILE GLU TRP PHE THR ALA LYS ASP PRO ILE ASN LEU GLY SEQRES 14 A 416 PHE LEU TYR TRP GLU GLU PRO ASP ASP THR GLY HIS ASP SEQRES 15 A 416 VAL GLY PRO ASP SER PRO LEU MET GLY SER VAL ILE SER SEQRES 16 A 416 ASP VAL ASP HIS LYS LEU GLY TYR LEU ILE LYS MET LEU SEQRES 17 A 416 LYS ARG ALA LYS LEU TRP ASN ASN VAL ASN LEU ILE VAL SEQRES 18 A 416 THR SER ASP HIS GLY MET THR GLN CYS SER LYS GLN ARG SEQRES 19 A 416 VAL ILE GLU LEU ASP ARG TYR LEU ASP LYS GLU HIS TYR SEQRES 20 A 416 THR LEU ILE ASP HIS SER PRO VAL ALA ALA ILE LEU PRO SEQRES 21 A 416 LYS GLU GLY LYS PHE ASP GLU VAL TYR ASP ALA LEU ALA SEQRES 22 A 416 GLY ALA HIS PRO ASN LEU THR VAL TYR LYS LYS GLU GLU SEQRES 23 A 416 ILE PRO GLU ARG TRP HIS TYR LYS HIS ASN ASP ARG VAL SEQRES 24 A 416 GLN PRO ILE VAL ALA VAL ALA ASP GLU GLY TRP TYR ILE SEQRES 25 A 416 LEU GLN ASN LYS SER ASP ASP PHE LEU LEU GLY ASN HIS SEQRES 26 A 416 GLY TYR ASP ASN ALA LEU ALA GLU MET HIS PRO ILE PHE SEQRES 27 A 416 LEU ALA HIS GLY PRO ALA PHE ARG LYS ASN PHE THR LYS SEQRES 28 A 416 GLU ALA MET ASN SER THR ASP LEU TYR SER LEU LEU CYS SEQRES 29 A 416 HIS LEU LEU ASN LEU THR ALA LEU PRO HIS ASN GLY SER SEQRES 30 A 416 PHE TRP ASN VAL GLN ASP LEU LEU SER SER ALA THR PRO SEQRES 31 A 416 LYS PRO ILE PRO TYR THR GLN SER THR THR LEU LEU LEU SEQRES 32 A 416 GLY SER ASP LYS PRO GLY GLU ASP GLU GLN GLU GLU SER HET NAG B 1 26 HET NAG B 2 27 HET BMA B 3 20 HET MAN B 4 22 HET MAN B 5 22 HET NAG C 1 26 HET NAG C 2 27 HET BMA C 3 21 HET MAN C 4 22 HET FUC C 5 21 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET NAG A 509 28 HET NAG A 510 28 HET NAG A 511 28 HET NAG A 517 28 HET EDO A 518 10 HET EDO A 519 10 HET PGE A 520 23 HET PEG A 521 17 HET PEG A 522 17 HET PEG A 523 17 HET AMP A 524 35 HET AMP A 525 34 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 3(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 ZN 3(ZN 2+) FORMUL 11 EDO 2(C2 H6 O2) FORMUL 13 PGE C6 H14 O4 FORMUL 14 PEG 3(C4 H10 O3) FORMUL 17 AMP 2(C10 H14 N5 O7 P) FORMUL 19 HOH *476(H2 O) HELIX 1 AA1 ARG A 39 LYS A 45 5 7 HELIX 2 AA2 THR A 48 ASN A 57 1 10 HELIX 3 AA3 LYS A 71 GLY A 82 1 12 HELIX 4 AA4 PHE A 84 GLY A 89 1 6 HELIX 5 AA5 GLU A 107 MET A 109 5 3 HELIX 6 AA6 ASP A 113 TRP A 117 5 5 HELIX 7 AA7 PRO A 122 ALA A 130 1 9 HELIX 8 AA8 SER A 162 THR A 175 1 14 HELIX 9 AA9 PRO A 190 GLY A 198 1 9 HELIX 10 AB1 LEU A 203 ALA A 225 1 23 HELIX 11 AB2 ASP A 253 TYR A 255 5 3 HELIX 12 AB3 ASP A 257 GLU A 259 5 3 HELIX 13 AB4 LYS A 278 ALA A 287 1 10 HELIX 14 AB5 GLU A 299 ILE A 301 5 3 HELIX 15 AB6 PRO A 302 HIS A 306 5 5 HELIX 16 AB7 LEU A 345 HIS A 349 5 5 HELIX 17 AB8 ASP A 372 LEU A 381 1 10 HELIX 18 AB9 SER A 391 GLN A 396 1 6 HELIX 19 AC1 ASP A 397 LEU A 399 5 3 SHEET 1 AA1 8 TYR A 153 TYR A 154 0 SHEET 2 AA1 8 SER A 134 ALA A 137 1 N SER A 134 O TYR A 153 SHEET 3 AA1 8 LEU A 182 TRP A 187 1 O PHE A 184 N ALA A 137 SHEET 4 AA1 8 VAL A 30 PHE A 35 1 N VAL A 32 O GLY A 183 SHEET 5 AA1 8 ASN A 232 THR A 236 1 O ILE A 234 N VAL A 33 SHEET 6 AA1 8 PHE A 352 HIS A 355 -1 O HIS A 355 N LEU A 233 SHEET 7 AA1 8 VAL A 59 THR A 65 -1 N VAL A 59 O ALA A 354 SHEET 8 AA1 8 PHE A 363 ASN A 369 1 O LYS A 365 N HIS A 60 SHEET 1 AA2 2 ASP A 94 ASP A 97 0 SHEET 2 AA2 2 LYS A 102 SER A 105 -1 O LYS A 102 N ASP A 97 SHEET 1 AA3 2 THR A 242 GLN A 243 0 SHEET 2 AA3 2 GLY A 337 ASN A 338 -1 O ASN A 338 N THR A 242 SHEET 1 AA4 2 VAL A 249 GLU A 251 0 SHEET 2 AA4 2 TYR A 325 LEU A 327 1 O TYR A 325 N ILE A 250 SHEET 1 AA5 4 TYR A 261 ASP A 265 0 SHEET 2 AA5 4 VAL A 269 PRO A 274 -1 O ALA A 271 N ILE A 264 SHEET 3 AA5 4 ILE A 316 ALA A 320 -1 O ILE A 316 N ILE A 272 SHEET 4 AA5 4 LEU A 293 LYS A 297 -1 N TYR A 296 O VAL A 317 LINK ND2 ASN A 101 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 158 C1 NAG A 511 1555 1555 1.44 LINK ND2 ASN A 292 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 329 C1 NAG A 517 1555 1555 1.45 LINK ND2 ASN A 369 C1 NAG A 509 1555 1555 1.45 LINK ND2 ASN A 389 C1 NAG A 510 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O6 NAG C 1 C1 FUC C 5 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK OD1 ASP A 36 ZN ZN A 502 1555 1555 1.94 LINK OE2 GLU A 159 ZN ZN A 503 1555 1555 2.09 LINK OD1 ASP A 191 ZN ZN A 501 1555 1555 2.12 LINK OD2 ASP A 191 ZN ZN A 501 1555 1555 2.51 LINK OD1 ASP A 192 ZN ZN A 503 1555 1555 2.60 LINK NE2 HIS A 195 ZN ZN A 501 1555 1555 2.02 LINK OD2 ASP A 238 ZN ZN A 502 1555 1555 2.00 LINK NE2 HIS A 239 ZN ZN A 502 1555 1555 2.06 LINK NE2 HIS A 339 ZN ZN A 501 1555 1555 2.06 LINK ZN ZN A 501 O2P AMP A 524 1555 1555 1.95 LINK ZN ZN A 502 O3P AMP A 524 1555 1555 1.84 LINK ZN ZN A 503 O3' AMP A 524 1555 1555 2.17 LINK ZN ZN A 503 O HOH A 603 1555 1555 2.38 LINK ZN ZN A 503 O HOH A 607 1555 1555 2.48 LINK ZN ZN A 503 O HOH A 948 1555 1555 2.36 CISPEP 1 PHE A 68 ILE A 69 0 -7.82 CISPEP 2 GLU A 189 PRO A 190 0 11.49 CISPEP 3 SER A 267 PRO A 268 0 3.33 CRYST1 84.239 84.239 295.796 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011871 0.006854 0.000000 0.00000 SCALE2 0.000000 0.013707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003381 0.00000