HEADER TRANSFERASE 05-APR-17 5VEQ TITLE MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB TITLE 2 STRUCTURE 3E2Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYSTEINE-S-CONJUGATE BETA-LYASE 2,KYNURENINE COMPND 5 AMINOTRANSFERASE 3,KYNURENINE AMINOTRANSFERASE III,KATIII,KYNURENINE- COMPND 6 -GLYOXYLATE TRANSAMINASE,KYNURENINE--OXOGLUTARATE TRANSAMINASE III; COMPND 7 EC: 2.6.1.7,4.4.1.13,2.6.1.63; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KYAT3, CCBL2, KAT3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AMINOTRANSFERASE III, MOUSE, RE-REFINEMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,Z.DAUTER,W.MINOR,R.STANFIELD,P.POREBSKI,M.JASKOLSKI, AUTHOR 2 E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP REVDAT 4 22-MAY-24 5VEQ 1 REMARK REVDAT 3 13-APR-22 5VEQ 1 AUTHOR JRNL LINK REVDAT 2 14-FEB-18 5VEQ 1 JRNL REVDAT 1 29-NOV-17 5VEQ 0 JRNL AUTH A.WLODAWER,Z.DAUTER,P.J.POREBSKI,W.MINOR,R.STANFIELD, JRNL AUTH 2 M.JASKOLSKI,E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP JRNL TITL DETECT, CORRECT, RETRACT: HOW TO MANAGE INCORRECT STRUCTURAL JRNL TITL 2 MODELS. JRNL REF FEBS J. V. 285 444 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29113027 JRNL DOI 10.1111/FEBS.14320 REMARK 0 REMARK 0 THIS ENTRY REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL DATA REMARK 0 IN 3E2Y, DETERMINED BY Q.HAN,R.ROBINSON,T.CAI,D.A.TAGLE,J.LI REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3E2Y REMARK 0 AUTH Q.HAN,H.ROBINSON,T.CAI,D.A.TAGLE,J.LI REMARK 0 TITL BIOCHEMICAL AND STRUCTURAL PROPERTIES OF MOUSE KYNURENINE REMARK 0 TITL 2 AMINOTRANSFERASE III. REMARK 0 REF MOL. CELL. BIOL. V. 29 784 2009 REMARK 0 REFN ESSN 1098-5549 REMARK 0 PMID 19029248 REMARK 0 DOI 10.1128/MCB.01272-08 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 42764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2273 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.649 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227310. REMARK 200 REMARK 200 SEE THE ORIGINAL DATA, ENTRY 3E2Y REMARK 280 REMARK 280 SEE THE ORIGINAL DATA, ENTRY 3E2Y REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.26800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.78350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.78350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.40200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.78350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.78350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.13400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.78350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.78350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 174.40200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.78350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.78350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.13400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.26800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.26800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 59 REMARK 465 LEU A 60 REMARK 465 ALA A 61 REMARK 465 ALA A 62 REMARK 465 THR B 58 REMARK 465 LYS B 59 REMARK 465 LEU B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 GLY B 382 REMARK 465 ALA B 383 REMARK 465 ASP B 384 REMARK 465 LEU B 385 REMARK 465 SER B 386 REMARK 465 ASP B 387 REMARK 465 MET B 388 REMARK 465 ASN B 389 REMARK 465 SER B 390 REMARK 465 ASP B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 221 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 57 35.35 -74.96 REMARK 500 TYR A 98 134.53 -38.42 REMARK 500 SER A 310 -83.97 -118.31 REMARK 500 TYR A 312 -71.79 66.92 REMARK 500 SER A 386 -47.40 -29.87 REMARK 500 ASP B 185 11.81 -69.71 REMARK 500 SER B 310 -82.33 -116.48 REMARK 500 TYR B 312 -78.29 65.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 42 OD1 REMARK 620 2 GLU A 47 OE1 78.9 REMARK 620 3 GLU A 47 OE2 121.3 50.2 REMARK 620 4 HOH A 609 O 137.6 81.0 68.3 REMARK 620 5 HOH A 711 O 67.4 84.0 123.3 73.7 REMARK 620 6 HOH A 741 O 144.6 117.2 67.0 77.6 140.9 REMARK 620 7 HOH A 774 O 83.5 85.8 67.6 131.7 150.5 67.8 REMARK 620 8 HOH A 807 O 81.5 148.4 157.0 97.4 65.5 92.9 116.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 122 OE1 REMARK 620 2 GLN A 122 OE1 0.0 REMARK 620 3 HOH A 643 O 137.3 137.3 REMARK 620 4 HOH A 643 O 91.7 91.7 128.2 REMARK 620 5 HOH A 648 O 116.3 116.3 78.3 95.9 REMARK 620 6 HOH A 648 O 84.1 84.1 81.7 90.2 158.4 REMARK 620 7 HOH A 814 O 169.3 169.3 48.0 80.8 72.4 88.2 REMARK 620 8 HOH A 814 O 140.1 140.1 72.6 56.0 92.1 74.2 29.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 240 O REMARK 620 2 HOH A 615 O 139.5 REMARK 620 3 HOH A 657 O 94.1 116.8 REMARK 620 4 HOH A 659 O 77.7 62.3 148.9 REMARK 620 5 HOH A 714 O 88.2 74.9 77.3 72.6 REMARK 620 6 HOH A 794 O 83.6 97.1 125.5 83.8 156.2 REMARK 620 7 HOH A 797 O 76.3 140.1 62.4 140.5 135.0 64.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 240 O REMARK 620 2 HOH B 632 O 79.5 REMARK 620 3 HOH B 643 O 94.7 80.5 REMARK 620 4 HOH B 698 O 99.3 154.6 74.3 REMARK 620 5 HOH B 726 O 155.4 76.0 79.2 101.9 REMARK 620 6 HOH B 758 O 80.2 135.9 139.9 67.5 119.6 REMARK 620 7 HOH B 777 O 93.5 75.8 153.1 129.4 82.7 66.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E2Y RELATED DB: PDB REMARK 900 3E2Y IS AN ORIGINAL DATA. THE CURRENT ENTRY IS AN ALTERNATIVE REMARK 900 MODELING OF 3E2Y. IN PARTICULAR, THE HEPES MOLECULE WAS LOCATED IN REMARK 900 THE ACTIVE SITE OF THE ENZYME INSTEAD OF GLUTAMINE AND SEVERAL REMARK 900 CALCIUM IONS WERE IDENTIFIED DBREF 5VEQ A 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 DBREF 5VEQ B 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 SEQADV 5VEQ ALA A 41 UNP Q71RI9 EXPRESSION TAG SEQADV 5VEQ ALA B 41 UNP Q71RI9 EXPRESSION TAG SEQRES 1 A 411 ALA ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL SEQRES 2 A 411 TRP VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL SEQRES 3 A 411 VAL ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SEQRES 4 A 411 SER TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE SEQRES 5 A 411 ASP ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO SEQRES 6 A 411 ALA LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE SEQRES 7 A 411 TYR GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL SEQRES 8 A 411 ALA VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN SEQRES 9 A 411 GLY LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL SEQRES 10 A 411 PRO PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA SEQRES 11 A 411 GLY ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO SEQRES 12 A 411 THR ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE SEQRES 13 A 411 ASP PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR SEQRES 14 A 411 LYS ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY SEQRES 15 A 411 LYS VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP SEQRES 16 A 411 LEU CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU SEQRES 17 A 411 VAL TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL SEQRES 18 A 411 LYS ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE SEQRES 19 A 411 THR ILE GLY SER ALA GLY LYS THR PHE SER VAL THR GLY SEQRES 20 A 411 TRP LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE SEQRES 21 A 411 LYS HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR SEQRES 22 A 411 CYS ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE SEQRES 23 A 411 TRP ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR SEQRES 24 A 411 PHE ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP SEQRES 25 A 411 ARG MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO SEQRES 26 A 411 ILE VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SEQRES 27 A 411 SER SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP SEQRES 28 A 411 GLU PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS SEQRES 29 A 411 HIS LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS SEQRES 30 A 411 ASP SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG SEQRES 31 A 411 PHE CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA SEQRES 32 A 411 GLU GLU ILE PHE ARG ALA TRP ASN SEQRES 1 B 411 ALA ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL SEQRES 2 B 411 TRP VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL SEQRES 3 B 411 VAL ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SEQRES 4 B 411 SER TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE SEQRES 5 B 411 ASP ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO SEQRES 6 B 411 ALA LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE SEQRES 7 B 411 TYR GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL SEQRES 8 B 411 ALA VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN SEQRES 9 B 411 GLY LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL SEQRES 10 B 411 PRO PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA SEQRES 11 B 411 GLY ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO SEQRES 12 B 411 THR ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE SEQRES 13 B 411 ASP PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR SEQRES 14 B 411 LYS ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY SEQRES 15 B 411 LYS VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP SEQRES 16 B 411 LEU CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU SEQRES 17 B 411 VAL TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL SEQRES 18 B 411 LYS ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE SEQRES 19 B 411 THR ILE GLY SER ALA GLY LYS THR PHE SER VAL THR GLY SEQRES 20 B 411 TRP LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE SEQRES 21 B 411 LYS HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR SEQRES 22 B 411 CYS ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE SEQRES 23 B 411 TRP ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR SEQRES 24 B 411 PHE ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP SEQRES 25 B 411 ARG MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO SEQRES 26 B 411 ILE VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SEQRES 27 B 411 SER SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP SEQRES 28 B 411 GLU PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS SEQRES 29 B 411 HIS LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS SEQRES 30 B 411 ASP SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG SEQRES 31 B 411 PHE CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA SEQRES 32 B 411 GLU GLU ILE PHE ARG ALA TRP ASN HET PMP A 501 16 HET EPE A 502 15 HET PGE A 503 10 HET GOL A 504 6 HET GOL A 505 6 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HET PMP B 501 16 HET EPE B 502 15 HET PG4 B 503 13 HET GOL B 504 6 HET GOL B 505 6 HET CA B 506 1 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PMP 2(C8 H13 N2 O5 P) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 5 PGE C6 H14 O4 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 8 CA 4(CA 2+) FORMUL 13 PG4 C8 H18 O5 FORMUL 17 HOH *405(H2 O) HELIX 1 AA1 ALA A 43 GLU A 47 5 5 HELIX 2 AA2 ASN A 52 PHE A 57 1 6 HELIX 3 AA3 PRO A 79 PHE A 91 1 13 HELIX 4 AA4 ILE A 92 GLN A 97 5 6 HELIX 5 AA5 HIS A 104 GLN A 120 1 17 HELIX 6 AA6 VAL A 133 VAL A 147 1 15 HELIX 7 AA7 CYS A 162 ALA A 170 1 9 HELIX 8 AA8 THR A 190 SER A 192 5 3 HELIX 9 AA9 ASP A 197 SER A 203 1 7 HELIX 10 AB1 THR A 226 ASP A 241 1 16 HELIX 11 AB2 LYS A 262 LEU A 266 5 5 HELIX 12 AB3 MET A 269 GLU A 271 5 3 HELIX 13 AB4 ALA A 279 PHE A 283 1 5 HELIX 14 AB5 VAL A 285 LYS A 289 5 5 HELIX 15 AB6 PRO A 296 ASN A 309 1 14 HELIX 16 AB7 ALA A 315 LYS A 331 1 17 HELIX 17 AB8 CYS A 338 VAL A 361 1 24 HELIX 18 AB9 SER A 379 GLY A 382 5 4 HELIX 19 AC1 PRO A 393 LYS A 407 1 15 HELIX 20 AC2 SER A 414 CYS A 417 5 4 HELIX 21 AC3 SER A 421 GLU A 426 1 6 HELIX 22 AC4 LYS A 436 ALA A 449 1 14 HELIX 23 AC5 ALA B 43 GLU B 47 5 5 HELIX 24 AC6 ASN B 52 PHE B 57 1 6 HELIX 25 AC7 PRO B 79 PHE B 91 1 13 HELIX 26 AC8 ILE B 92 GLN B 97 5 6 HELIX 27 AC9 HIS B 104 GLN B 120 1 17 HELIX 28 AD1 VAL B 133 VAL B 147 1 15 HELIX 29 AD2 CYS B 162 ALA B 170 1 9 HELIX 30 AD3 THR B 190 SER B 192 5 3 HELIX 31 AD4 ASP B 197 PHE B 205 1 9 HELIX 32 AD5 THR B 226 ASP B 241 1 16 HELIX 33 AD6 LYS B 262 LEU B 266 5 5 HELIX 34 AD7 MET B 269 GLU B 271 5 3 HELIX 35 AD8 ALA B 279 PHE B 283 1 5 HELIX 36 AD9 VAL B 285 LYS B 289 5 5 HELIX 37 AE1 PRO B 296 ASN B 309 1 14 HELIX 38 AE2 ALA B 315 LYS B 331 1 17 HELIX 39 AE3 CYS B 338 SER B 360 1 23 HELIX 40 AE4 PRO B 393 LYS B 407 1 15 HELIX 41 AE5 SER B 414 CYS B 417 5 4 HELIX 42 AE6 SER B 421 GLU B 426 1 6 HELIX 43 AE7 LYS B 436 ALA B 449 1 14 SHEET 1 AA1 2 VAL A 67 ASN A 68 0 SHEET 2 AA1 2 LEU A 408 THR A 409 1 O THR A 409 N VAL A 67 SHEET 1 AA2 7 ILE A 129 ALA A 132 0 SHEET 2 AA2 7 GLY A 291 ILE A 294 -1 O GLY A 291 N ALA A 132 SHEET 3 AA2 7 THR A 273 SER A 278 -1 N THR A 275 O ILE A 294 SHEET 4 AA2 7 LEU A 243 ASP A 247 1 N SER A 246 O ILE A 274 SHEET 5 AA2 7 THR A 209 ASN A 215 1 N LEU A 214 O ASP A 247 SHEET 6 AA2 7 GLU A 152 VAL A 157 1 N GLU A 152 O LYS A 210 SHEET 7 AA2 7 VAL A 173 PRO A 178 1 O VAL A 175 N VAL A 153 SHEET 1 AA3 2 ARG A 180 SER A 181 0 SHEET 2 AA3 2 TRP A 194 THR A 195 -1 O THR A 195 N ARG A 180 SHEET 1 AA4 4 LYS A 364 ILE A 366 0 SHEET 2 AA4 4 PHE A 373 ASP A 377 -1 O ILE A 375 N ILE A 366 SHEET 3 AA4 4 LEU A 428 CYS A 432 -1 O PHE A 431 N ILE A 374 SHEET 4 AA4 4 ILE A 411 PRO A 412 -1 N ILE A 411 O ARG A 430 SHEET 1 AA5 2 VAL B 67 ASN B 68 0 SHEET 2 AA5 2 LEU B 408 THR B 409 1 O THR B 409 N VAL B 67 SHEET 1 AA6 7 ILE B 129 ALA B 132 0 SHEET 2 AA6 7 GLY B 291 ILE B 294 -1 O GLY B 291 N ALA B 132 SHEET 3 AA6 7 THR B 273 SER B 278 -1 N GLY B 277 O TRP B 292 SHEET 4 AA6 7 LEU B 243 ASP B 247 1 N SER B 246 O ILE B 274 SHEET 5 AA6 7 THR B 209 ASN B 215 1 N LEU B 214 O ASP B 247 SHEET 6 AA6 7 GLU B 152 VAL B 157 1 N GLU B 152 O LYS B 210 SHEET 7 AA6 7 VAL B 173 PRO B 178 1 O ILE B 177 N VAL B 157 SHEET 1 AA7 2 ARG B 180 SER B 181 0 SHEET 2 AA7 2 TRP B 194 THR B 195 -1 O THR B 195 N ARG B 180 SHEET 1 AA8 4 LYS B 364 ILE B 366 0 SHEET 2 AA8 4 PHE B 373 ASP B 377 -1 O ASP B 377 N LYS B 364 SHEET 3 AA8 4 LEU B 428 CYS B 432 -1 O PHE B 431 N ILE B 374 SHEET 4 AA8 4 ILE B 411 PRO B 412 -1 N ILE B 411 O ARG B 430 LINK OD1 ASN A 42 CA CA A 508 1555 1555 2.71 LINK OE1 GLU A 47 CA CA A 508 1555 1555 2.52 LINK OE2 GLU A 47 CA CA A 508 1555 1555 2.64 LINK OE1 GLN A 122 CA CA A 506 1555 1555 2.29 LINK OE1 GLN A 122 CA CA A 506 1555 8555 2.61 LINK O HIS A 240 CA CA A 507 1555 1555 2.40 LINK CA CA A 506 O HOH A 643 1555 1555 3.04 LINK CA CA A 506 O HOH A 643 1555 8555 2.48 LINK CA CA A 506 O HOH A 648 1555 1555 2.34 LINK CA CA A 506 O HOH A 648 1555 8555 2.38 LINK CA CA A 506 O HOH A 814 1555 1555 2.62 LINK CA CA A 506 O HOH A 814 1555 8555 2.49 LINK CA CA A 507 O HOH A 615 1555 1555 2.43 LINK CA CA A 507 O HOH A 657 1555 1555 2.69 LINK CA CA A 507 O HOH A 659 1555 1555 2.61 LINK CA CA A 507 O HOH A 714 1555 1555 2.43 LINK CA CA A 507 O HOH A 794 1555 1555 2.41 LINK CA CA A 507 O HOH A 797 1555 1555 2.81 LINK CA CA A 508 O HOH A 609 1555 6555 2.40 LINK CA CA A 508 O HOH A 711 1555 1555 2.35 LINK CA CA A 508 O HOH A 741 1555 6555 2.77 LINK CA CA A 508 O HOH A 774 1555 1555 2.76 LINK CA CA A 508 O HOH A 807 1555 6555 2.98 LINK O HIS B 240 CA CA B 506 1555 1555 2.27 LINK CA CA B 506 O HOH B 632 1555 1555 2.62 LINK CA CA B 506 O HOH B 643 1555 1555 2.44 LINK CA CA B 506 O HOH B 698 1555 1555 2.51 LINK CA CA B 506 O HOH B 726 1555 1555 2.21 LINK CA CA B 506 O HOH B 758 1555 1555 2.51 LINK CA CA B 506 O HOH B 777 1555 1555 2.40 CISPEP 1 VAL A 157 PRO A 158 0 -1.30 CISPEP 2 THR A 216 PRO A 217 0 -5.09 CISPEP 3 ASN A 219 PRO A 220 0 15.07 CISPEP 4 VAL B 157 PRO B 158 0 1.82 CISPEP 5 THR B 216 PRO B 217 0 -9.16 CISPEP 6 ASN B 219 PRO B 220 0 19.40 SITE 1 AC1 15 GLY A 134 ALA A 135 TYR A 136 TYR A 160 SITE 2 AC1 15 ASN A 215 ASN A 219 ASP A 247 TYR A 250 SITE 3 AC1 15 SER A 278 LYS A 281 LYS A 289 EPE A 502 SITE 4 AC1 15 HOH A 654 HOH A 690 TYR B 98 SITE 1 AC2 14 TRP A 54 GLY A 72 TYR A 160 ASN A 219 SITE 2 AC2 14 PHE A 373 ARG A 430 PMP A 501 HOH A 654 SITE 3 AC2 14 HOH A 698 TYR B 98 THR B 99 GLY B 101 SITE 4 AC2 14 TYR B 312 THR B 313 SITE 1 AC3 5 LEU A 179 HIS A 424 PHE A 425 ARG B 199 SITE 2 AC3 5 HOH B 617 SITE 1 AC4 10 MET A 156 PRO A 158 PHE A 159 TYR A 160 SITE 2 AC4 10 TYR A 163 ASN A 215 HIS A 218 ASN A 219 SITE 3 AC4 10 TYR A 225 HOH A 610 SITE 1 AC5 6 LYS A 182 SER A 192 THR A 195 THR A 226 SITE 2 AC5 6 GLU A 229 HOH A 620 SITE 1 AC6 4 GLN A 122 HOH A 643 HOH A 648 HOH A 814 SITE 1 AC7 7 HIS A 240 HOH A 615 HOH A 657 HOH A 659 SITE 2 AC7 7 HOH A 714 HOH A 794 HOH A 797 SITE 1 AC8 7 ASN A 42 GLU A 47 HOH A 609 HOH A 711 SITE 2 AC8 7 HOH A 741 HOH A 774 HOH A 807 SITE 1 AC9 14 TYR A 98 GLY B 134 ALA B 135 TYR B 136 SITE 2 AC9 14 ASN B 215 ASN B 219 ASP B 247 TYR B 250 SITE 3 AC9 14 SER B 278 LYS B 281 LYS B 289 EPE B 502 SITE 4 AC9 14 HOH B 624 HOH B 658 SITE 1 AD1 15 TYR A 98 THR A 99 GLY A 101 TYR A 312 SITE 2 AD1 15 THR A 313 TRP B 54 GLN B 71 GLY B 72 SITE 3 AD1 15 TYR B 160 ASN B 219 PHE B 373 ARG B 430 SITE 4 AD1 15 PMP B 501 HOH B 645 HOH B 658 SITE 1 AD2 9 ASP A 197 ARG A 199 GLU A 200 LEU B 179 SITE 2 AD2 9 ARG B 180 SER B 181 TRP B 194 PRO B 423 SITE 3 AD2 9 HIS B 424 SITE 1 AD3 3 GLN B 231 ASP B 235 PRO B 267 SITE 1 AD4 5 GLU B 251 TRP B 252 HIS B 260 LYS B 262 SITE 2 AD4 5 HOH B 646 SITE 1 AD5 7 HIS B 240 HOH B 632 HOH B 643 HOH B 698 SITE 2 AD5 7 HOH B 726 HOH B 758 HOH B 777 CRYST1 91.567 91.567 232.536 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004300 0.00000