HEADER IMMUNE SYSTEM 12-APR-17 5VH5 TITLE CRYSTAL STRUCTURE OF FC FRAGMENT OF ANTI-TNFA ANTIBODY INFLIXIMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFLIXIMAB FC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 10090, 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS ANTIBODY, FC, BIOSIMILAR, INFLIXIMAB, TNFA, ANTI-TNFA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MAYCLIN,T.E.EDWARDS,T.F.LERCH,H.CONLAN,P.SHARPE REVDAT 5 04-OCT-23 5VH5 1 HETSYN LINK REVDAT 4 29-JUL-20 5VH5 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 02-AUG-17 5VH5 1 JRNL REVDAT 2 07-JUN-17 5VH5 1 JRNL REVDAT 1 03-MAY-17 5VH5 0 JRNL AUTH T.F.LERCH,P.SHARPE,S.J.MAYCLIN,T.E.EDWARDS,E.LEE,H.D.CONLON, JRNL AUTH 2 S.POLLECK,J.C.ROUSE,Y.LUO,Q.ZOU JRNL TITL INFLIXIMAB CRYSTAL STRUCTURES REVEAL INSIGHTS INTO JRNL TITL 2 SELF-ASSOCIATION. JRNL REF MABS V. 9 874 2017 JRNL REFN ESSN 1942-0870 JRNL PMID 28421849 JRNL DOI 10.1080/19420862.2017.1320463 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2229 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2701 - 3.7686 0.99 2875 151 0.1692 0.1771 REMARK 3 2 3.7686 - 2.9919 1.00 2788 147 0.1833 0.2349 REMARK 3 3 2.9919 - 2.6139 1.00 2759 146 0.2007 0.2572 REMARK 3 4 2.6139 - 2.3750 1.00 2734 143 0.2009 0.2696 REMARK 3 5 2.3750 - 2.2048 1.00 2751 145 0.2013 0.2271 REMARK 3 6 2.2048 - 2.0748 1.00 2721 143 0.1997 0.2327 REMARK 3 7 2.0748 - 1.9709 1.00 2722 144 0.1957 0.2504 REMARK 3 8 1.9709 - 1.8851 1.00 2712 142 0.2107 0.2945 REMARK 3 9 1.8851 - 1.8125 1.00 2702 142 0.2323 0.2723 REMARK 3 10 1.8125 - 1.7500 1.00 2721 144 0.2502 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1778 REMARK 3 ANGLE : 0.856 2444 REMARK 3 CHIRALITY : 0.054 298 REMARK 3 PLANARITY : 0.005 300 REMARK 3 DIHEDRAL : 14.136 1083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5077 23.1671 -4.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.3558 T22: 0.3922 REMARK 3 T33: 0.5922 T12: -0.0353 REMARK 3 T13: -0.0785 T23: -0.4033 REMARK 3 L TENSOR REMARK 3 L11: 1.0512 L22: 0.0357 REMARK 3 L33: 0.5316 L12: -0.1409 REMARK 3 L13: -0.1782 L23: -0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.9470 S13: 1.0742 REMARK 3 S21: 0.3783 S22: 0.0909 S23: -0.1310 REMARK 3 S31: -0.3553 S32: 0.1597 S33: -0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4226 25.8396 -5.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.4062 T22: 0.0466 REMARK 3 T33: 0.6004 T12: 0.0041 REMARK 3 T13: -0.1017 T23: -0.5735 REMARK 3 L TENSOR REMARK 3 L11: 0.8813 L22: 0.7832 REMARK 3 L33: 0.3772 L12: -0.0228 REMARK 3 L13: 0.0627 L23: 0.4832 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: -0.5832 S13: 1.3562 REMARK 3 S21: 0.2857 S22: 0.3673 S23: -0.3550 REMARK 3 S31: -0.4249 S32: -0.1622 S33: 1.2996 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9534 -5.5661 -12.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2940 REMARK 3 T33: 0.3208 T12: 0.0078 REMARK 3 T13: -0.0057 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 1.3350 L22: 0.6399 REMARK 3 L33: 0.4958 L12: 0.6357 REMARK 3 L13: -0.3997 L23: 0.1509 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.5087 S13: -0.9233 REMARK 3 S21: 0.0900 S22: -0.0472 S23: -0.0304 REMARK 3 S31: 0.0722 S32: 0.1249 S33: -0.0693 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 33.264 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.985 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.15 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ E7 (266855E7): 10% PROPANOL-2, REMARK 280 200MM ZINC ACETATE, 100MM SODIUM CACODYLATE PH6.5: PROTEIN CONC. REMARK 280 10MG/ML: CRYO 20% ETHYLENE GLYCOL: PUCKID SXT1-8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.08000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.95000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 ILE A 201 REMARK 465 ALA A 202 REMARK 465 ILE A 203 REMARK 465 ALA A 204 REMARK 465 VAL A 205 REMARK 465 ALA A 206 REMARK 465 LEU A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 PHE A 210 REMARK 465 ALA A 211 REMARK 465 THR A 212 REMARK 465 VAL A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 ASP A 217 REMARK 465 VAL A 218 REMARK 465 GLU A 219 REMARK 465 SER A 220 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 CYS A 223 REMARK 465 ASP A 224 REMARK 465 LYS A 225 REMARK 465 THR A 226 REMARK 465 HIS A 227 REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 PRO A 231 REMARK 465 CYS A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 PRO A 448 REMARK 465 GLY A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 TYR A 303 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 LEU A 331 CG CD1 CD2 REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ASN A 364 CG OD1 ND2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 SER A 447 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BMA B 3 O5 MAN B 7 1.55 REMARK 500 O HOH A 630 O HOH A 752 2.00 REMARK 500 O3 GAL B 6 O HOH A 601 2.10 REMARK 500 O HOH A 603 O HOH A 680 2.10 REMARK 500 O LEU A 361 O HOH A 602 2.13 REMARK 500 O HOH A 746 O HOH A 751 2.13 REMARK 500 ND1 HIS A 436 O HOH A 603 2.14 REMARK 500 NZ LYS A 343 O HOH A 604 2.14 REMARK 500 O HOH A 635 O HOH A 749 2.14 REMARK 500 O HOH A 606 O HOH A 608 2.17 REMARK 500 NE2 HIS A 271 O HOH A 605 2.17 REMARK 500 O HOH A 647 O HOH A 691 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 617 O HOH A 617 4555 2.09 REMARK 500 O HOH A 735 O HOH A 751 3654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 271 25.88 -79.35 REMARK 500 ASP A 273 78.55 -115.35 REMARK 500 ASN A 437 18.64 57.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 788 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 NE2 REMARK 620 2 HIS A 288 ND1 47.5 REMARK 620 3 HOH A 605 O 48.7 1.3 REMARK 620 4 HOH A 754 O 44.6 5.1 6.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 HIS A 438 NE2 107.3 REMARK 620 3 ACT A 504 O 116.8 92.6 REMARK 620 4 ACT A 504 OXT 99.1 147.7 58.3 REMARK 620 5 HOH A 630 O 117.3 109.4 110.3 72.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 GLU A 321 OE2 59.9 REMARK 620 3 GLU A 321 OE1 0.0 59.9 REMARK 620 4 GLU A 321 OE2 59.9 0.0 59.9 REMARK 620 5 HOH A 732 O 86.8 132.1 86.8 132.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VH3 RELATED DB: PDB REMARK 900 RELATED ID: 5VH4 RELATED DB: PDB DBREF 5VH5 A 196 450 PDB 5VH5 5VH5 196 450 SEQRES 1 A 255 MET LYS LYS THR ALA ILE ALA ILE ALA VAL ALA LEU ALA SEQRES 2 A 255 GLY PHE ALA THR VAL ALA GLN ALA ASP VAL GLU SER LYS SEQRES 3 A 255 SER CYS ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA SEQRES 4 A 255 PRO GLU LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO SEQRES 5 A 255 PRO LYS PRO LYS ASP THR LEU MET ILE SER ARG THR PRO SEQRES 6 A 255 GLU VAL THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP SEQRES 7 A 255 PRO GLU VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU SEQRES 8 A 255 VAL HIS ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR SEQRES 9 A 255 ASN SER THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU SEQRES 10 A 255 HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS SEQRES 11 A 255 VAL SER ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR SEQRES 12 A 255 ILE SER LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL SEQRES 13 A 255 TYR THR LEU PRO PRO SER ARG ASP GLU LEU THR LYS ASN SEQRES 14 A 255 GLN VAL SER LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SEQRES 15 A 255 SER ASP ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO SEQRES 16 A 255 GLU ASN ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER SEQRES 17 A 255 ASP GLY SER PHE PHE LEU TYR SER LYS LEU THR VAL ASP SEQRES 18 A 255 LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER SEQRES 19 A 255 VAL MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SEQRES 20 A 255 SER LEU SER LEU SER PRO GLY LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET GAL B 6 11 HET MAN B 7 11 HET FUL B 8 10 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ACT A 504 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUL C6 H12 O5 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *188(H2 O) HELIX 1 AA1 LYS A 249 MET A 255 1 7 HELIX 2 AA2 LEU A 312 ASN A 318 1 7 HELIX 3 AA3 ARG A 358 LYS A 363 5 6 HELIX 4 AA4 LYS A 417 GLY A 423 1 7 HELIX 5 AA5 LEU A 435 ASN A 437 5 3 SHEET 1 AA1 4 SER A 242 PHE A 246 0 SHEET 2 AA1 4 GLU A 261 SER A 270 -1 O VAL A 265 N PHE A 244 SHEET 3 AA1 4 THR A 302 THR A 310 -1 O TYR A 303 N VAL A 269 SHEET 4 AA1 4 LYS A 291 THR A 292 -1 N LYS A 291 O VAL A 308 SHEET 1 AA2 4 SER A 242 PHE A 246 0 SHEET 2 AA2 4 GLU A 261 SER A 270 -1 O VAL A 265 N PHE A 244 SHEET 3 AA2 4 THR A 302 THR A 310 -1 O TYR A 303 N VAL A 269 SHEET 4 AA2 4 GLU A 296 GLU A 297 -1 N GLU A 296 O ARG A 304 SHEET 1 AA3 4 VAL A 285 VAL A 287 0 SHEET 2 AA3 4 LYS A 277 VAL A 282 -1 N VAL A 282 O VAL A 285 SHEET 3 AA3 4 TYR A 322 SER A 327 -1 O LYS A 325 N ASN A 279 SHEET 4 AA3 4 ILE A 335 ILE A 339 -1 O ILE A 335 N VAL A 326 SHEET 1 AA4 4 GLN A 350 LEU A 354 0 SHEET 2 AA4 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA4 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA4 4 TYR A 394 THR A 396 -1 N LYS A 395 O LYS A 412 SHEET 1 AA5 4 GLN A 350 LEU A 354 0 SHEET 2 AA5 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA5 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA5 4 VAL A 400 LEU A 401 -1 N VAL A 400 O PHE A 408 SHEET 1 AA6 4 GLN A 389 PRO A 390 0 SHEET 2 AA6 4 ALA A 381 SER A 386 -1 N SER A 386 O GLN A 389 SHEET 3 AA6 4 PHE A 426 MET A 431 -1 O SER A 429 N GLU A 383 SHEET 4 AA6 4 TYR A 439 LEU A 444 -1 O LYS A 442 N CYS A 428 SSBOND 1 CYS A 264 CYS A 324 1555 1555 2.05 SSBOND 2 CYS A 370 CYS A 428 1555 1555 2.02 LINK ND2 ASN A 300 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUL B 8 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.43 LINK O4 NAG B 5 C1 GAL B 6 1555 1555 1.44 LINK NE2 HIS A 271 ZN ZN A 502 1555 8555 2.36 LINK ND1 HIS A 288 ZN ZN A 502 1555 1555 2.21 LINK NE2 HIS A 313 ZN ZN A 501 1555 1555 2.02 LINK OE1 GLU A 321 ZN ZN A 503 1555 1555 2.30 LINK OE2 GLU A 321 ZN ZN A 503 1555 1555 2.10 LINK OE1 GLU A 321 ZN ZN A 503 1555 3554 2.58 LINK OE2 GLU A 321 ZN ZN A 503 1555 3554 2.01 LINK NE2 HIS A 438 ZN ZN A 501 1555 1555 2.08 LINK ZN ZN A 501 O ACT A 504 1555 1555 2.04 LINK ZN ZN A 501 OXT ACT A 504 1555 1555 2.28 LINK ZN ZN A 501 O HOH A 630 1555 1555 2.12 LINK ZN ZN A 502 O HOH A 605 1555 8455 1.78 LINK ZN ZN A 502 O HOH A 754 1555 1555 1.85 LINK ZN ZN A 503 O HOH A 732 1555 3554 2.49 CISPEP 1 TYR A 376 PRO A 377 0 -1.92 CRYST1 50.160 148.030 75.900 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013175 0.00000