HEADER HYDROLASE 12-APR-17 5VHC TITLE DHX36 WITH AN N-TERMINAL TRUNCATION BOUND TO ADP-BEF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAH (ASP-GLU-ALA-HIS) BOX POLYPEPTIDE 36; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: RESIDUES 150-1010; COMPND 5 SYNONYM: DEAH-BOX HELICASE 36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: DHX36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,A.FERRE-D'AMARE REVDAT 6 03-APR-24 5VHC 1 REMARK REVDAT 5 13-MAR-24 5VHC 1 REMARK REVDAT 4 06-NOV-19 5VHC 1 REMARK REVDAT 3 04-JUL-18 5VHC 1 JRNL REVDAT 2 27-JUN-18 5VHC 1 JRNL REVDAT 1 13-JUN-18 5VHC 0 JRNL AUTH M.C.CHEN,R.TIPPANA,N.A.DEMESHKINA,P.MURAT,S.BALASUBRAMANIAN, JRNL AUTH 2 S.MYONG,A.R.FERRE-D'AMARE JRNL TITL STRUCTURAL BASIS OF G-QUADRUPLEX UNFOLDING BY THE DEAH/RHA JRNL TITL 2 HELICASE DHX36. JRNL REF NATURE V. 558 465 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29899445 JRNL DOI 10.1038/S41586-018-0209-9 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 25658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5016 - 5.1762 0.92 2753 145 0.1613 0.1935 REMARK 3 2 5.1762 - 4.1098 0.91 2697 141 0.1600 0.1929 REMARK 3 3 4.1098 - 3.5907 0.93 2754 147 0.1763 0.1934 REMARK 3 4 3.5907 - 3.2625 0.93 2742 143 0.2149 0.2438 REMARK 3 5 3.2625 - 3.0288 0.94 2766 146 0.2322 0.3204 REMARK 3 6 3.0288 - 2.8502 0.93 2713 148 0.2499 0.2783 REMARK 3 7 2.8502 - 2.7075 0.91 2679 144 0.2478 0.2802 REMARK 3 8 2.7075 - 2.5897 0.91 2675 141 0.2556 0.3300 REMARK 3 9 2.5897 - 2.4900 0.88 2589 135 0.2703 0.3479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6345 REMARK 3 ANGLE : 0.517 8629 REMARK 3 CHIRALITY : 0.041 1009 REMARK 3 PLANARITY : 0.003 1094 REMARK 3 DIHEDRAL : 14.239 3839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 167 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6393 -1.5153 -2.4323 REMARK 3 T TENSOR REMARK 3 T11: 0.4658 T22: 0.4145 REMARK 3 T33: 0.4071 T12: 0.0078 REMARK 3 T13: 0.1437 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.9708 L22: 0.7471 REMARK 3 L33: 2.2071 L12: 0.0447 REMARK 3 L13: -0.1865 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.0359 S13: 0.0209 REMARK 3 S21: -0.0012 S22: -0.0334 S23: -0.0183 REMARK 3 S31: -0.0920 S32: -0.0868 S33: -0.0096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 605 THROUGH 829 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9854 -19.1365 3.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.5262 T22: 0.5039 REMARK 3 T33: 0.3987 T12: -0.0120 REMARK 3 T13: 0.1119 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.5909 L22: 1.6120 REMARK 3 L33: 0.1575 L12: -0.7857 REMARK 3 L13: -0.0048 L23: 0.2999 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.1384 S13: -0.1163 REMARK 3 S21: 0.2864 S22: -0.0262 S23: 0.0161 REMARK 3 S31: 0.0769 S32: 0.0307 S33: -0.0349 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 830 THROUGH 989 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2538 -30.5605 1.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.4188 T22: 0.3236 REMARK 3 T33: 0.4842 T12: -0.0141 REMARK 3 T13: 0.1050 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.6173 L22: 3.0522 REMARK 3 L33: 5.6743 L12: -0.1382 REMARK 3 L13: 0.5657 L23: 0.7634 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.1861 S13: -0.0287 REMARK 3 S21: 0.1983 S22: -0.2300 S23: -0.1589 REMARK 3 S31: -0.0165 S32: 0.1883 S33: 0.1542 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25679 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 40.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07521 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SEMET LABELED PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE AND REMARK 280 20% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.75800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 150 REMARK 465 ILE D 151 REMARK 465 ASN D 152 REMARK 465 GLN D 153 REMARK 465 GLU D 154 REMARK 465 LYS D 155 REMARK 465 ARG D 156 REMARK 465 PRO D 157 REMARK 465 PHE D 158 REMARK 465 ARG D 159 REMARK 465 ILE D 160 REMARK 465 ARG D 161 REMARK 465 ASP D 162 REMARK 465 LYS D 163 REMARK 465 TYR D 164 REMARK 465 ILE D 165 REMARK 465 ASP D 166 REMARK 465 GLN D 413 REMARK 465 LYS D 414 REMARK 465 GLU D 415 REMARK 465 HIS D 416 REMARK 465 ARG D 417 REMARK 465 SER D 418 REMARK 465 GLN D 419 REMARK 465 PHE D 420 REMARK 465 LYS D 421 REMARK 465 LYS D 422 REMARK 465 GLY D 423 REMARK 465 PHE D 424 REMARK 465 MET D 425 REMARK 465 GLN D 426 REMARK 465 GLY D 427 REMARK 465 HIS D 428 REMARK 465 VAL D 429 REMARK 465 ASN D 430 REMARK 465 ARG D 431 REMARK 465 GLN D 432 REMARK 465 GLU D 433 REMARK 465 LYS D 434 REMARK 465 GLY D 852A REMARK 465 LYS D 852B REMARK 465 LYS D 852C REMARK 465 ARG D 852D REMARK 465 GLN D 990 REMARK 465 GLU D 991 REMARK 465 LYS D 992 REMARK 465 ALA D 993 REMARK 465 THR D 994 REMARK 465 PRO D 995 REMARK 465 ARG D 996 REMARK 465 ASN D 997 REMARK 465 LEU D 998 REMARK 465 PRO D 999 REMARK 465 PRO D 1000 REMARK 465 ARG D 1001 REMARK 465 PHE D 1002 REMARK 465 GLN D 1003 REMARK 465 ASP D 1004 REMARK 465 GLY D 1005 REMARK 465 TYR D 1006 REMARK 465 TYR D 1007 REMARK 465 SER D 1008 REMARK 465 PRO D 1009 REMARK 465 HIS D 1010 REMARK 465 HIS D 1011 REMARK 465 HIS D 1012 REMARK 465 HIS D 1013 REMARK 465 HIS D 1014 REMARK 465 HIS D 1015 REMARK 465 HIS D 1016 REMARK 465 HIS D 1017 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 192 CE NZ REMARK 470 LYS D 194 CE NZ REMARK 470 ARG D 204 CZ NH1 NH2 REMARK 470 PHE D 205 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 208 CD CE NZ REMARK 470 LYS D 216 CG CD CE NZ REMARK 470 ARG D 297 CD NE CZ NH1 NH2 REMARK 470 GLN D 319 CD OE1 NE2 REMARK 470 GLU D 340 CG CD OE1 OE2 REMARK 470 LYS D 406 NZ REMARK 470 ARG D 408 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 412 CG CD OE1 OE2 REMARK 470 TYR D 435 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 443 CG CD OE1 OE2 REMARK 470 ARG D 450 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 451 CG CD OE1 OE2 REMARK 470 ARG D 455 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 470 CG CD OE1 OE2 REMARK 470 LYS D 471 CD CE NZ REMARK 470 GLU D 489 CD OE1 OE2 REMARK 470 ASP D 501 OD1 OD2 REMARK 470 GLN D 537 CG CD OE1 NE2 REMARK 470 LYS D 540 CG CD CE NZ REMARK 470 ARG D 541 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 580 CG OD1 OD2 REMARK 470 THR D 581 OG1 CG2 REMARK 470 GLN D 582 CG CD OE1 NE2 REMARK 470 ASN D 583 CG OD1 ND2 REMARK 470 MET D 588 CG SD CE REMARK 470 LYS D 599 CD CE NZ REMARK 470 GLU D 632 CG CD OE1 OE2 REMARK 470 ARG D 649 CD NE CZ NH1 NH2 REMARK 470 LYS D 674 CE NZ REMARK 470 LYS D 684 CD CE NZ REMARK 470 GLN D 685 CD OE1 NE2 REMARK 470 LYS D 741 CG CD CE NZ REMARK 470 LYS D 752 CG CD CE NZ REMARK 470 ASP D 753 CG OD1 OD2 REMARK 470 PHE D 776 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 777 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 780 CG CD CE NZ REMARK 470 GLN D 802 CG CD OE1 NE2 REMARK 470 ASN D 851 CG OD1 ND2 REMARK 470 LEU D 852 CG CD1 CD2 REMARK 470 LYS D 855 CG CD CE NZ REMARK 470 MET D 856 CG SD CE REMARK 470 LYS D 858 CG CD CE NZ REMARK 470 GLU D 877 CG CD OE1 OE2 REMARK 470 THR D 879 OG1 CG2 REMARK 470 GLU D 880 CG CD OE1 OE2 REMARK 470 ARG D 893 CD NE CZ NH1 NH2 REMARK 470 LYS D 921 CG CD CE NZ REMARK 470 ASN D 923 CG OD1 ND2 REMARK 470 GLU D 926 CG CD OE1 OE2 REMARK 470 LYS D 947 CD CE NZ REMARK 470 HIS D 965 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 972 OG1 CG2 REMARK 470 LYS D 973 CG CD CE NZ REMARK 470 ARG D 975 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP D 828 O HOH D 1201 1.83 REMARK 500 O HOH D 1244 O HOH D 1266 1.91 REMARK 500 OE1 GLU D 233 O HOH D 1202 2.01 REMARK 500 O ALA D 369 O HOH D 1203 2.02 REMARK 500 NE2 GLN D 937 O HOH D 1204 2.06 REMARK 500 O PHE D 729 O HOH D 1205 2.07 REMARK 500 N ASN D 288 O HOH D 1206 2.11 REMARK 500 N LEU D 688 O HOH D 1207 2.11 REMARK 500 O ASN D 288 O HOH D 1208 2.15 REMARK 500 O HOH D 1236 O HOH D 1249 2.17 REMARK 500 O HOH D 1261 O HOH D 1265 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 176 97.55 -69.29 REMARK 500 PHE D 380 48.39 -100.98 REMARK 500 SER D 559 -55.31 73.94 REMARK 500 ASN D 584 71.19 -69.18 REMARK 500 LEU D 616 49.19 -85.40 REMARK 500 ARG D 635 20.25 -148.35 REMARK 500 PRO D 699 46.72 -78.87 REMARK 500 PHE D 729 -114.68 57.91 REMARK 500 LYS D 752 -123.16 54.41 REMARK 500 LYS D 862 -52.58 64.34 REMARK 500 ASN D 884 33.42 -96.36 REMARK 500 SER D 895 -104.06 53.50 REMARK 500 ASN D 923 -50.33 60.81 REMARK 500 GLU D 932 -48.94 67.35 REMARK 500 LYS D 973 72.19 -104.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 239 OG1 REMARK 620 2 GLU D 337 OE1 88.1 REMARK 620 3 ADP D1103 O1B 77.0 165.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF D1102 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP D1103 O3B REMARK 620 2 BEF D1102 F1 107.3 REMARK 620 3 BEF D1102 F2 116.8 112.2 REMARK 620 4 BEF D1102 F3 103.4 109.8 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF D 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP D 1103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VHE RELATED DB: PDB REMARK 900 RELATED ID: 5VHD RELATED DB: PDB REMARK 900 RELATED ID: 5VHA RELATED DB: PDB DBREF 5VHC D 150 1008 UNP Q05B79 Q05B79_BOVIN 150 1010 SEQADV 5VHC TYR D 435 UNP Q05B79 GLU 435 CONFLICT SEQADV 5VHC TYR D 436 UNP Q05B79 GLU 436 CONFLICT SEQADV 5VHC TYR D 437 UNP Q05B79 LYS 437 CONFLICT SEQADV 5VHC PRO D 1009 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1010 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1011 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1012 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1013 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1014 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1015 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1016 UNP Q05B79 EXPRESSION TAG SEQADV 5VHC HIS D 1017 UNP Q05B79 EXPRESSION TAG SEQRES 1 D 870 MET ILE ASN GLN GLU LYS ARG PRO PHE ARG ILE ARG ASP SEQRES 2 D 870 LYS TYR ILE ASP ARG ASP SER GLU TYR LEU LEU GLN GLU SEQRES 3 D 870 ASN GLU PRO ASP ALA THR LEU ASP GLN GLN LEU LEU GLU SEQRES 4 D 870 ASP LEU GLN LYS LYS LYS THR ASP LEU ARG TYR ILE GLU SEQRES 5 D 870 MET GLN ARG PHE ARG GLU LYS LEU PRO SER TYR GLY MET SEQRES 6 D 870 GLN LYS GLU LEU VAL ASN MET ILE ASP ASN HIS GLN VAL SEQRES 7 D 870 THR VAL ILE SER GLY GLU THR GLY CYS GLY LYS THR THR SEQRES 8 D 870 GLN VAL THR GLN PHE ILE LEU ASP ASN TYR ILE GLU ARG SEQRES 9 D 870 GLY LYS GLY SER ALA CYS ARG ILE VAL CYS THR GLN PRO SEQRES 10 D 870 ARG ARG ILE SER ALA ILE SER VAL ALA GLU ARG VAL ALA SEQRES 11 D 870 ALA GLU ARG ALA GLU SER CYS GLY ASN GLY ASN SER THR SEQRES 12 D 870 GLY TYR GLN ILE ARG LEU GLN SER ARG LEU PRO ARG LYS SEQRES 13 D 870 GLN GLY SER ILE LEU TYR CYS THR THR GLY ILE ILE LEU SEQRES 14 D 870 GLN TRP LEU GLN SER ASP PRO HIS LEU SER SER VAL SER SEQRES 15 D 870 HIS ILE VAL LEU ASP GLU ILE HIS GLU ARG ASN LEU GLN SEQRES 16 D 870 SER ASP VAL LEU MET THR VAL VAL LYS ASP LEU LEU SER SEQRES 17 D 870 TYR ARG PRO ASP LEU LYS VAL VAL LEU MET SER ALA THR SEQRES 18 D 870 LEU ASN ALA GLU LYS PHE SER GLU TYR PHE GLY ASN CYS SEQRES 19 D 870 PRO MET ILE HIS ILE PRO GLY PHE THR PHE PRO VAL VAL SEQRES 20 D 870 GLU TYR LEU LEU GLU ASP ILE ILE GLU LYS ILE ARG TYR SEQRES 21 D 870 VAL PRO GLU GLN LYS GLU HIS ARG SER GLN PHE LYS LYS SEQRES 22 D 870 GLY PHE MET GLN GLY HIS VAL ASN ARG GLN GLU LYS TYR SEQRES 23 D 870 TYR TYR GLU ALA ILE TYR LYS GLU ARG TRP PRO GLY TYR SEQRES 24 D 870 LEU ARG GLU LEU ARG GLN ARG TYR SER ALA SER THR VAL SEQRES 25 D 870 ASP VAL VAL GLU MET MET ASP ASP GLU LYS VAL ASP LEU SEQRES 26 D 870 ASN LEU ILE ALA ALA LEU ILE ARG TYR ILE VAL LEU GLU SEQRES 27 D 870 GLU GLU ASP GLY ALA ILE LEU VAL PHE LEU PRO GLY TRP SEQRES 28 D 870 ASP ASN ILE SER THR LEU HIS ASP LEU LEU MET SER GLN SEQRES 29 D 870 VAL MET PHE LYS SER ASP LYS PHE ILE ILE ILE PRO LEU SEQRES 30 D 870 HIS SER LEU MET PRO THR VAL ASN GLN THR GLN VAL PHE SEQRES 31 D 870 LYS ARG THR PRO PRO GLY VAL ARG LYS ILE VAL ILE ALA SEQRES 32 D 870 THR ASN ILE ALA GLU THR SER ILE THR ILE ASP ASP VAL SEQRES 33 D 870 VAL TYR VAL ILE ASP GLY GLY LYS ILE LYS GLU THR HIS SEQRES 34 D 870 PHE ASP THR GLN ASN ASN ILE SER THR MET SER ALA GLU SEQRES 35 D 870 TRP VAL SER LYS ALA ASN ALA LYS GLN ARG LYS GLY ARG SEQRES 36 D 870 ALA GLY ARG VAL GLN PRO GLY HIS CYS TYR HIS LEU TYR SEQRES 37 D 870 ASN SER LEU ARG ALA SER LEU LEU ASP ASP TYR GLN LEU SEQRES 38 D 870 PRO GLU ILE LEU ARG THR PRO LEU GLU GLU LEU CYS LEU SEQRES 39 D 870 GLN ILE LYS ILE LEU ARG LEU GLY GLY ILE ALA HIS PHE SEQRES 40 D 870 LEU SER ARG LEU MET ASP PRO PRO SER ASN GLU ALA VAL SEQRES 41 D 870 LEU LEU SER ILE LYS HIS LEU MET GLU LEU ASN ALA LEU SEQRES 42 D 870 ASP LYS GLN GLU GLU LEU THR PRO LEU GLY VAL HIS LEU SEQRES 43 D 870 ALA ARG LEU PRO VAL GLU PRO HIS ILE GLY LYS MET ILE SEQRES 44 D 870 LEU PHE GLY ALA LEU PHE CYS CYS LEU ASP PRO VAL LEU SEQRES 45 D 870 THR ILE ALA ALA SER LEU SER PHE LYS ASP PRO PHE VAL SEQRES 46 D 870 ILE PRO LEU GLY LYS GLU LYS VAL ALA ASP ALA ARG ARG SEQRES 47 D 870 LYS GLU LEU ALA LYS ASP THR LYS SER ASP HIS LEU THR SEQRES 48 D 870 VAL VAL ASN ALA PHE LYS GLY TRP GLU LYS ALA LYS GLN SEQRES 49 D 870 ARG GLY PHE ARG TYR GLU LYS ASP TYR CYS TRP GLU TYR SEQRES 50 D 870 PHE LEU SER SER ASN THR LEU GLN MET LEU HIS ASN MET SEQRES 51 D 870 LYS GLY GLN PHE ALA GLU HIS LEU LEU GLY ALA GLY PHE SEQRES 52 D 870 VAL SER SER ARG ASN PRO GLN ASP PRO GLU SER ASN ILE SEQRES 53 D 870 ASN SER ASP ASN GLU LYS ILE ILE LYS ALA VAL ILE CYS SEQRES 54 D 870 ALA GLY LEU TYR PRO LYS VAL ALA LYS ILE ARG LEU ASN SEQRES 55 D 870 LEU GLY LYS LYS ARG LYS MET VAL LYS VAL TYR THR LYS SEQRES 56 D 870 THR ASP GLY VAL VAL ALA ILE HIS PRO LYS SER VAL ASN SEQRES 57 D 870 VAL GLU GLN THR GLU PHE ASN TYR ASN TRP LEU ILE TYR SEQRES 58 D 870 HIS LEU LYS MET ARG THR SER SER ILE TYR LEU TYR ASP SEQRES 59 D 870 CYS THR GLU VAL SER PRO TYR CYS LEU LEU PHE PHE GLY SEQRES 60 D 870 GLY ASP ILE SER ILE GLN LYS ASP ASN ASP GLN GLU THR SEQRES 61 D 870 ILE ALA VAL ASP GLU TRP ILE ILE PHE GLN SER PRO ALA SEQRES 62 D 870 ARG ILE ALA HIS LEU VAL LYS GLU LEU ARG LYS GLU LEU SEQRES 63 D 870 ASP ILE LEU LEU GLN GLU LYS ILE GLU SER PRO HIS PRO SEQRES 64 D 870 VAL ASP TRP LYS ASP THR LYS SER ARG ASP CYS ALA VAL SEQRES 65 D 870 LEU SER ALA ILE ILE ASP LEU ILE LYS THR GLN GLU LYS SEQRES 66 D 870 ALA THR PRO ARG ASN LEU PRO PRO ARG PHE GLN ASP GLY SEQRES 67 D 870 TYR TYR SER PRO HIS HIS HIS HIS HIS HIS HIS HIS HET MG D1101 1 HET BEF D1102 4 HET ADP D1103 27 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 BEF BE F3 1- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *97(H2 O) HELIX 1 AA1 ASP D 179 LYS D 194 1 16 HELIX 2 AA2 ASP D 196 GLU D 207 1 12 HELIX 3 AA3 LEU D 209 MET D 214 1 6 HELIX 4 AA4 MET D 214 HIS D 225 1 12 HELIX 5 AA5 GLY D 237 ARG D 253 1 17 HELIX 6 AA6 LYS D 255 ALA D 258 5 4 HELIX 7 AA7 ARG D 267 ARG D 282 1 16 HELIX 8 AA8 THR D 314 ASP D 324 1 11 HELIX 9 AA9 ASN D 342 ARG D 359 1 18 HELIX 10 AB1 ASN D 372 PHE D 380 1 9 HELIX 11 AB2 LEU D 399 ARG D 408 1 10 HELIX 12 AB3 TYR D 436 GLN D 454 1 19 HELIX 13 AB4 SER D 457 MET D 467 1 11 HELIX 14 AB5 ASP D 473 GLU D 488 1 16 HELIX 15 AB6 GLY D 499 SER D 512 1 14 HELIX 16 AB7 GLN D 513 SER D 518 1 6 HELIX 17 AB8 PRO D 531 GLN D 537 1 7 HELIX 18 AB9 VAL D 538 LYS D 540 5 3 HELIX 19 AC1 ASN D 554 GLU D 557 5 4 HELIX 20 AC2 SER D 594 GLY D 603 1 10 HELIX 21 AC3 ASN D 618 SER D 623 1 6 HELIX 22 AC4 PRO D 631 ARG D 635 5 5 HELIX 23 AC5 LEU D 638 LEU D 648 1 11 HELIX 24 AC6 GLY D 652 LEU D 660 1 9 HELIX 25 AC7 SER D 665 LEU D 679 1 15 HELIX 26 AC8 THR D 689 LEU D 698 1 10 HELIX 27 AC9 GLU D 701 PHE D 714 1 14 HELIX 28 AD1 CYS D 716 SER D 728 1 13 HELIX 29 AD2 LYS D 739 LYS D 752 1 14 HELIX 30 AD3 SER D 756 GLY D 775 1 20 HELIX 31 AD4 GLY D 775 TYR D 786 1 12 HELIX 32 AD5 SER D 789 ALA D 810 1 22 HELIX 33 AD6 ASP D 820 ASN D 824 5 5 HELIX 34 AD7 ASN D 829 TYR D 842 1 14 HELIX 35 AD8 SER D 906 GLY D 914 1 9 HELIX 36 AD9 ALA D 940 SER D 963 1 24 HELIX 37 AE1 SER D 974 THR D 989 1 16 SHEET 1 AA1 8 GLN D 299 ARG D 301 0 SHEET 2 AA1 8 THR D 292 ILE D 296 -1 N ILE D 296 O GLN D 299 SHEET 3 AA1 8 SER D 308 THR D 313 1 O TYR D 311 N GLY D 293 SHEET 4 AA1 8 ARG D 260 GLN D 265 1 N CYS D 263 O LEU D 310 SHEET 5 AA1 8 HIS D 332 ASP D 336 1 O VAL D 334 N VAL D 262 SHEET 6 AA1 8 LYS D 363 SER D 368 1 O LYS D 363 N ILE D 333 SHEET 7 AA1 8 VAL D 227 GLY D 232 1 N ILE D 230 O LEU D 366 SHEET 8 AA1 8 MET D 385 ILE D 388 1 O ILE D 388 N SER D 231 SHEET 1 AA2 6 VAL D 395 TYR D 398 0 SHEET 2 AA2 6 GLY D 611 HIS D 615 1 O HIS D 615 N TYR D 398 SHEET 3 AA2 6 VAL D 565 ASP D 570 1 N ASP D 570 O TYR D 614 SHEET 4 AA2 6 ALA D 492 PHE D 496 1 N LEU D 494 O ILE D 569 SHEET 5 AA2 6 ARG D 547 ALA D 552 1 O VAL D 550 N VAL D 495 SHEET 6 AA2 6 PHE D 521 LEU D 526 1 N ILE D 524 O ILE D 549 SHEET 1 AA3 2 LYS D 573 PHE D 579 0 SHEET 2 AA3 2 SER D 586 TRP D 592 -1 O SER D 589 N GLU D 576 SHEET 1 AA4 7 LYS D 891 MET D 892 0 SHEET 2 AA4 7 TYR D 898 LEU D 899 -1 O TYR D 898 N MET D 892 SHEET 3 AA4 7 VAL D 866 ILE D 869 1 N ALA D 868 O LEU D 899 SHEET 4 AA4 7 MET D 856 TYR D 860 -1 N VAL D 859 O VAL D 867 SHEET 5 AA4 7 VAL D 845 ASN D 851 -1 N LYS D 847 O TYR D 860 SHEET 6 AA4 7 TRP D 885 TYR D 888 -1 O LEU D 886 N ALA D 846 SHEET 7 AA4 7 CYS D 902 GLU D 904 -1 O THR D 903 N ILE D 887 SHEET 1 AA5 3 ILE D 917 LYS D 921 0 SHEET 2 AA5 3 GLU D 926 VAL D 930 -1 O ALA D 929 N SER D 918 SHEET 3 AA5 3 ILE D 934 PHE D 936 -1 O ILE D 934 N VAL D 930 LINK OG1 THR D 239 MG MG D1101 1555 1555 2.03 LINK OE1 GLU D 337 MG MG D1101 1555 1555 2.30 LINK MG MG D1101 O1B ADP D1103 1555 1555 2.51 LINK BE BEF D1102 O3B ADP D1103 1555 1555 1.40 CISPEP 1 TYR D 842 PRO D 843 0 9.13 CISPEP 2 ARG D 893 THR D 894 0 9.33 SITE 1 AC1 4 THR D 239 GLU D 337 BEF D1102 ADP D1103 SITE 1 AC2 11 THR D 234 GLY D 235 LYS D 238 GLU D 337 SITE 2 AC2 11 ALA D 369 SER D 559 ARG D 604 ARG D 607 SITE 3 AC2 11 MG D1101 ADP D1103 HOH D1260 SITE 1 AC3 19 GLU D 233 GLY D 235 CYS D 236 GLY D 237 SITE 2 AC3 19 LYS D 238 THR D 239 THR D 240 ARG D 277 SITE 3 AC3 19 THR D 561 ASP D 563 ARG D 607 VAL D 608 SITE 4 AC3 19 MG D1101 BEF D1102 HOH D1209 HOH D1234 SITE 5 AC3 19 HOH D1248 HOH D1259 HOH D1261 CRYST1 61.878 111.516 62.966 90.00 110.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016161 0.000000 0.006097 0.00000 SCALE2 0.000000 0.008967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016974 0.00000