HEADER HYDROLASE 13-APR-17 5VHD TITLE DHX36 WITH AN N-TERMINAL TRUNCATION BOUND TO ADP-ALF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAH (ASP-GLU-ALA-HIS) BOX POLYPEPTIDE 36; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: RESIDUES 150-1010; COMPND 5 SYNONYM: DEAH-BOX HELICASE 36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: DHX36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,A.FERRE-D'AMARE REVDAT 5 03-APR-24 5VHD 1 REMARK REVDAT 4 13-MAR-24 5VHD 1 REMARK REVDAT 3 04-JUL-18 5VHD 1 JRNL REVDAT 2 27-JUN-18 5VHD 1 JRNL REVDAT 1 13-JUN-18 5VHD 0 JRNL AUTH M.C.CHEN,R.TIPPANA,N.A.DEMESHKINA,P.MURAT,S.BALASUBRAMANIAN, JRNL AUTH 2 S.MYONG,A.R.FERRE-D'AMARE JRNL TITL STRUCTURAL BASIS OF G-QUADRUPLEX UNFOLDING BY THE DEAH/RHA JRNL TITL 2 HELICASE DHX36. JRNL REF NATURE V. 558 465 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29899445 JRNL DOI 10.1038/S41586-018-0209-9 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7423 - 4.8765 0.99 3682 142 0.1587 0.1830 REMARK 3 2 4.8765 - 3.8712 0.99 3617 146 0.1463 0.1861 REMARK 3 3 3.8712 - 3.3820 0.99 3624 141 0.1690 0.2218 REMARK 3 4 3.3820 - 3.0729 0.99 3595 149 0.1991 0.2362 REMARK 3 5 3.0729 - 2.8527 0.99 3573 137 0.2099 0.2690 REMARK 3 6 2.8527 - 2.6845 0.99 3581 148 0.2056 0.2484 REMARK 3 7 2.6845 - 2.5501 0.98 3584 141 0.2050 0.2499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6281 REMARK 3 ANGLE : 0.562 8548 REMARK 3 CHIRALITY : 0.041 1004 REMARK 3 PLANARITY : 0.003 1080 REMARK 3 DIHEDRAL : 14.144 3793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 167 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3194 -3.8791 -17.6446 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.3144 REMARK 3 T33: 0.2056 T12: -0.0044 REMARK 3 T13: 0.0301 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.4399 L22: 1.8578 REMARK 3 L33: 1.2739 L12: 0.3605 REMARK 3 L13: -0.7850 L23: -0.2600 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.3153 S13: -0.1014 REMARK 3 S21: -0.0684 S22: -0.0032 S23: 0.0866 REMARK 3 S31: -0.0629 S32: -0.1576 S33: 0.0018 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 359 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3130 0.7432 10.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.2937 REMARK 3 T33: 0.3379 T12: -0.0203 REMARK 3 T13: 0.0489 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.8593 L22: 0.8085 REMARK 3 L33: 2.8541 L12: -0.0743 REMARK 3 L13: -0.6601 L23: -0.6743 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.1734 S13: -0.0250 REMARK 3 S21: 0.0991 S22: 0.0050 S23: -0.1239 REMARK 3 S31: -0.0804 S32: 0.1687 S33: 0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 605 THROUGH 713 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5888 -7.8596 -4.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.2920 REMARK 3 T33: 0.2787 T12: -0.0306 REMARK 3 T13: 0.0334 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.0398 L22: 0.7496 REMARK 3 L33: 0.6186 L12: -0.6983 REMARK 3 L13: -0.6277 L23: 0.2839 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.0022 S13: 0.0632 REMARK 3 S21: -0.1665 S22: -0.0470 S23: -0.1312 REMARK 3 S31: -0.0766 S32: 0.0688 S33: -0.0432 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 714 THROUGH 990 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8336 -30.2763 5.6236 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.2073 REMARK 3 T33: 0.3639 T12: -0.0091 REMARK 3 T13: 0.0112 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.7660 L22: 1.6393 REMARK 3 L33: 3.2299 L12: 0.1549 REMARK 3 L13: -1.2447 L23: 0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: -0.2672 S13: -0.0308 REMARK 3 S21: 0.2504 S22: -0.1119 S23: -0.0990 REMARK 3 S31: -0.1077 S32: 0.0731 S33: -0.0216 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 46.734 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.14950 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SEMET LABELED PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE AND REMARK 280 20% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 150 REMARK 465 ILE D 151 REMARK 465 ASN D 152 REMARK 465 GLN D 153 REMARK 465 GLU D 154 REMARK 465 LYS D 155 REMARK 465 ARG D 156 REMARK 465 PRO D 157 REMARK 465 PHE D 158 REMARK 465 ARG D 159 REMARK 465 ILE D 160 REMARK 465 ARG D 161 REMARK 465 ASP D 162 REMARK 465 LYS D 163 REMARK 465 TYR D 164 REMARK 465 ILE D 165 REMARK 465 ASP D 166 REMARK 465 GLN D 413 REMARK 465 LYS D 414 REMARK 465 GLU D 415 REMARK 465 HIS D 416 REMARK 465 ARG D 417 REMARK 465 SER D 418 REMARK 465 GLN D 419 REMARK 465 PHE D 420 REMARK 465 LYS D 421 REMARK 465 LYS D 422 REMARK 465 GLY D 423 REMARK 465 PHE D 424 REMARK 465 MET D 425 REMARK 465 GLN D 426 REMARK 465 GLY D 427 REMARK 465 HIS D 428 REMARK 465 VAL D 429 REMARK 465 ASN D 430 REMARK 465 ARG D 431 REMARK 465 GLN D 432 REMARK 465 GLU D 433 REMARK 465 LYS D 434 REMARK 465 LEU D 851A REMARK 465 GLY D 851B REMARK 465 LYS D 851C REMARK 465 LYS D 851D REMARK 465 ARG D 851E REMARK 465 LYS D 851F REMARK 465 ASP D 922 REMARK 465 ASN D 923 REMARK 465 ASP D 924 REMARK 465 GLU D 991 REMARK 465 LYS D 992 REMARK 465 ALA D 993 REMARK 465 THR D 994 REMARK 465 PRO D 995 REMARK 465 ARG D 996 REMARK 465 ASN D 997 REMARK 465 LEU D 998 REMARK 465 PRO D 999 REMARK 465 PRO D 1000 REMARK 465 ARG D 1001 REMARK 465 PHE D 1002 REMARK 465 GLN D 1003 REMARK 465 ASP D 1004 REMARK 465 GLY D 1005 REMARK 465 TYR D 1006 REMARK 465 TYR D 1007 REMARK 465 SER D 1008 REMARK 465 PRO D 1009 REMARK 465 HIS D 1010 REMARK 465 HIS D 1011 REMARK 465 HIS D 1012 REMARK 465 HIS D 1013 REMARK 465 HIS D 1014 REMARK 465 HIS D 1015 REMARK 465 HIS D 1016 REMARK 465 HIS D 1017 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 192 CE NZ REMARK 470 LYS D 194 CE NZ REMARK 470 ARG D 204 CZ NH1 NH2 REMARK 470 PHE D 205 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 208 CD CE NZ REMARK 470 LYS D 216 CG CD CE NZ REMARK 470 ARG D 297 CD NE CZ NH1 NH2 REMARK 470 GLN D 319 CD OE1 NE2 REMARK 470 GLU D 340 CG CD OE1 OE2 REMARK 470 LYS D 375 CD CE NZ REMARK 470 LYS D 406 NZ REMARK 470 ARG D 408 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 412 CG CD OE1 OE2 REMARK 470 TYR D 435 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 443 CG CD OE1 OE2 REMARK 470 GLU D 451 CG CD OE1 OE2 REMARK 470 GLN D 454 CG CD OE1 NE2 REMARK 470 ARG D 455 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 470 CG CD OE1 OE2 REMARK 470 LYS D 471 CD CE NZ REMARK 470 GLU D 489 CD OE1 OE2 REMARK 470 ASP D 501 OD1 OD2 REMARK 470 GLN D 537 CG CD OE1 NE2 REMARK 470 LYS D 540 CG CD CE NZ REMARK 470 ARG D 541 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 580 CG OD1 OD2 REMARK 470 THR D 581 OG1 CG2 REMARK 470 GLN D 582 CG CD OE1 NE2 REMARK 470 ASN D 583 CG OD1 ND2 REMARK 470 ASN D 584 CG OD1 ND2 REMARK 470 MET D 588 CG SD CE REMARK 470 LYS D 599 CD CE NZ REMARK 470 GLU D 632 CG CD OE1 OE2 REMARK 470 ARG D 649 CD NE CZ NH1 NH2 REMARK 470 LYS D 674 CE NZ REMARK 470 LYS D 684 CD CE NZ REMARK 470 GLN D 685 CD OE1 NE2 REMARK 470 LEU D 737 CG CD1 CD2 REMARK 470 LYS D 741 CG CD CE NZ REMARK 470 LYS D 752 CG CD CE NZ REMARK 470 ASP D 753 CG OD1 OD2 REMARK 470 PHE D 776 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 777 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 780 CG CD CE NZ REMARK 470 GLU D 822 CG CD OE1 OE2 REMARK 470 GLU D 830 CG CD OE1 OE2 REMARK 470 ASN D 851 CG OD1 ND2 REMARK 470 MET D 856 CG SD CE REMARK 470 LYS D 858 CG CD CE NZ REMARK 470 GLU D 877 CG CD OE1 OE2 REMARK 470 THR D 879 OG1 CG2 REMARK 470 GLU D 880 CG CD OE1 OE2 REMARK 470 ARG D 893 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 920 CD OE1 NE2 REMARK 470 LYS D 921 CG CD CE NZ REMARK 470 GLN D 925 CG CD OE1 NE2 REMARK 470 GLU D 926 CG CD OE1 OE2 REMARK 470 GLN D 937 CG CD OE1 NE2 REMARK 470 LYS D 947 CD CE NZ REMARK 470 GLU D 962 CG CD OE1 OE2 REMARK 470 HIS D 965 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 970 CG CD CE NZ REMARK 470 THR D 972 OG1 CG2 REMARK 470 LYS D 973 CG CD CE NZ REMARK 470 ARG D 975 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 990 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 718 O HOH D 1201 2.02 REMARK 500 O HOH D 1294 O HOH D 1297 2.08 REMARK 500 OE2 GLU D 397 O HOH D 1202 2.18 REMARK 500 O LEU D 630 NH1 ARG D 635 2.18 REMARK 500 O HOH D 1242 O HOH D 1266 2.19 REMARK 500 OD2 ASP D 324 O HOH D 1203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 168 32.79 -92.88 REMARK 500 ASN D 290 -159.37 -85.15 REMARK 500 PHE D 380 45.03 -98.98 REMARK 500 ASN D 554 0.54 -68.07 REMARK 500 SER D 559 -59.47 68.04 REMARK 500 LEU D 616 48.45 -87.77 REMARK 500 ARG D 635 15.75 -149.55 REMARK 500 PRO D 699 47.74 -78.39 REMARK 500 CYS D 716 50.41 -140.19 REMARK 500 PHE D 729 -113.21 55.93 REMARK 500 LYS D 739 10.34 82.78 REMARK 500 LYS D 752 -124.63 57.36 REMARK 500 LYS D 862 -54.43 62.55 REMARK 500 ASN D 884 34.67 -95.95 REMARK 500 SER D 895 -5.09 61.25 REMARK 500 GLU D 932 -51.84 69.95 REMARK 500 THR D 972 -52.26 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D1308 DISTANCE = 6.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP D 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF D 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VHA RELATED DB: PDB REMARK 900 RELATED ID: 5VHC RELATED DB: PDB REMARK 900 RELATED ID: 5VHE RELATED DB: PDB DBREF 5VHD D 150 1008 UNP Q05B79 Q05B79_BOVIN 150 1010 SEQADV 5VHD TYR D 435 UNP Q05B79 GLU 435 CONFLICT SEQADV 5VHD TYR D 436 UNP Q05B79 GLU 436 CONFLICT SEQADV 5VHD TYR D 437 UNP Q05B79 LYS 437 CONFLICT SEQADV 5VHD PRO D 1009 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1010 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1011 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1012 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1013 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1014 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1015 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1016 UNP Q05B79 EXPRESSION TAG SEQADV 5VHD HIS D 1017 UNP Q05B79 EXPRESSION TAG SEQRES 1 D 870 MET ILE ASN GLN GLU LYS ARG PRO PHE ARG ILE ARG ASP SEQRES 2 D 870 LYS TYR ILE ASP ARG ASP SER GLU TYR LEU LEU GLN GLU SEQRES 3 D 870 ASN GLU PRO ASP ALA THR LEU ASP GLN GLN LEU LEU GLU SEQRES 4 D 870 ASP LEU GLN LYS LYS LYS THR ASP LEU ARG TYR ILE GLU SEQRES 5 D 870 MET GLN ARG PHE ARG GLU LYS LEU PRO SER TYR GLY MET SEQRES 6 D 870 GLN LYS GLU LEU VAL ASN MET ILE ASP ASN HIS GLN VAL SEQRES 7 D 870 THR VAL ILE SER GLY GLU THR GLY CYS GLY LYS THR THR SEQRES 8 D 870 GLN VAL THR GLN PHE ILE LEU ASP ASN TYR ILE GLU ARG SEQRES 9 D 870 GLY LYS GLY SER ALA CYS ARG ILE VAL CYS THR GLN PRO SEQRES 10 D 870 ARG ARG ILE SER ALA ILE SER VAL ALA GLU ARG VAL ALA SEQRES 11 D 870 ALA GLU ARG ALA GLU SER CYS GLY ASN GLY ASN SER THR SEQRES 12 D 870 GLY TYR GLN ILE ARG LEU GLN SER ARG LEU PRO ARG LYS SEQRES 13 D 870 GLN GLY SER ILE LEU TYR CYS THR THR GLY ILE ILE LEU SEQRES 14 D 870 GLN TRP LEU GLN SER ASP PRO HIS LEU SER SER VAL SER SEQRES 15 D 870 HIS ILE VAL LEU ASP GLU ILE HIS GLU ARG ASN LEU GLN SEQRES 16 D 870 SER ASP VAL LEU MET THR VAL VAL LYS ASP LEU LEU SER SEQRES 17 D 870 TYR ARG PRO ASP LEU LYS VAL VAL LEU MET SER ALA THR SEQRES 18 D 870 LEU ASN ALA GLU LYS PHE SER GLU TYR PHE GLY ASN CYS SEQRES 19 D 870 PRO MET ILE HIS ILE PRO GLY PHE THR PHE PRO VAL VAL SEQRES 20 D 870 GLU TYR LEU LEU GLU ASP ILE ILE GLU LYS ILE ARG TYR SEQRES 21 D 870 VAL PRO GLU GLN LYS GLU HIS ARG SER GLN PHE LYS LYS SEQRES 22 D 870 GLY PHE MET GLN GLY HIS VAL ASN ARG GLN GLU LYS TYR SEQRES 23 D 870 TYR TYR GLU ALA ILE TYR LYS GLU ARG TRP PRO GLY TYR SEQRES 24 D 870 LEU ARG GLU LEU ARG GLN ARG TYR SER ALA SER THR VAL SEQRES 25 D 870 ASP VAL VAL GLU MET MET ASP ASP GLU LYS VAL ASP LEU SEQRES 26 D 870 ASN LEU ILE ALA ALA LEU ILE ARG TYR ILE VAL LEU GLU SEQRES 27 D 870 GLU GLU ASP GLY ALA ILE LEU VAL PHE LEU PRO GLY TRP SEQRES 28 D 870 ASP ASN ILE SER THR LEU HIS ASP LEU LEU MET SER GLN SEQRES 29 D 870 VAL MET PHE LYS SER ASP LYS PHE ILE ILE ILE PRO LEU SEQRES 30 D 870 HIS SER LEU MET PRO THR VAL ASN GLN THR GLN VAL PHE SEQRES 31 D 870 LYS ARG THR PRO PRO GLY VAL ARG LYS ILE VAL ILE ALA SEQRES 32 D 870 THR ASN ILE ALA GLU THR SER ILE THR ILE ASP ASP VAL SEQRES 33 D 870 VAL TYR VAL ILE ASP GLY GLY LYS ILE LYS GLU THR HIS SEQRES 34 D 870 PHE ASP THR GLN ASN ASN ILE SER THR MET SER ALA GLU SEQRES 35 D 870 TRP VAL SER LYS ALA ASN ALA LYS GLN ARG LYS GLY ARG SEQRES 36 D 870 ALA GLY ARG VAL GLN PRO GLY HIS CYS TYR HIS LEU TYR SEQRES 37 D 870 ASN SER LEU ARG ALA SER LEU LEU ASP ASP TYR GLN LEU SEQRES 38 D 870 PRO GLU ILE LEU ARG THR PRO LEU GLU GLU LEU CYS LEU SEQRES 39 D 870 GLN ILE LYS ILE LEU ARG LEU GLY GLY ILE ALA HIS PHE SEQRES 40 D 870 LEU SER ARG LEU MET ASP PRO PRO SER ASN GLU ALA VAL SEQRES 41 D 870 LEU LEU SER ILE LYS HIS LEU MET GLU LEU ASN ALA LEU SEQRES 42 D 870 ASP LYS GLN GLU GLU LEU THR PRO LEU GLY VAL HIS LEU SEQRES 43 D 870 ALA ARG LEU PRO VAL GLU PRO HIS ILE GLY LYS MET ILE SEQRES 44 D 870 LEU PHE GLY ALA LEU PHE CYS CYS LEU ASP PRO VAL LEU SEQRES 45 D 870 THR ILE ALA ALA SER LEU SER PHE LYS ASP PRO PHE VAL SEQRES 46 D 870 ILE PRO LEU GLY LYS GLU LYS VAL ALA ASP ALA ARG ARG SEQRES 47 D 870 LYS GLU LEU ALA LYS ASP THR LYS SER ASP HIS LEU THR SEQRES 48 D 870 VAL VAL ASN ALA PHE LYS GLY TRP GLU LYS ALA LYS GLN SEQRES 49 D 870 ARG GLY PHE ARG TYR GLU LYS ASP TYR CYS TRP GLU TYR SEQRES 50 D 870 PHE LEU SER SER ASN THR LEU GLN MET LEU HIS ASN MET SEQRES 51 D 870 LYS GLY GLN PHE ALA GLU HIS LEU LEU GLY ALA GLY PHE SEQRES 52 D 870 VAL SER SER ARG ASN PRO GLN ASP PRO GLU SER ASN ILE SEQRES 53 D 870 ASN SER ASP ASN GLU LYS ILE ILE LYS ALA VAL ILE CYS SEQRES 54 D 870 ALA GLY LEU TYR PRO LYS VAL ALA LYS ILE ARG LEU ASN SEQRES 55 D 870 LEU GLY LYS LYS ARG LYS MET VAL LYS VAL TYR THR LYS SEQRES 56 D 870 THR ASP GLY VAL VAL ALA ILE HIS PRO LYS SER VAL ASN SEQRES 57 D 870 VAL GLU GLN THR GLU PHE ASN TYR ASN TRP LEU ILE TYR SEQRES 58 D 870 HIS LEU LYS MET ARG THR SER SER ILE TYR LEU TYR ASP SEQRES 59 D 870 CYS THR GLU VAL SER PRO TYR CYS LEU LEU PHE PHE GLY SEQRES 60 D 870 GLY ASP ILE SER ILE GLN LYS ASP ASN ASP GLN GLU THR SEQRES 61 D 870 ILE ALA VAL ASP GLU TRP ILE ILE PHE GLN SER PRO ALA SEQRES 62 D 870 ARG ILE ALA HIS LEU VAL LYS GLU LEU ARG LYS GLU LEU SEQRES 63 D 870 ASP ILE LEU LEU GLN GLU LYS ILE GLU SER PRO HIS PRO SEQRES 64 D 870 VAL ASP TRP LYS ASP THR LYS SER ARG ASP CYS ALA VAL SEQRES 65 D 870 LEU SER ALA ILE ILE ASP LEU ILE LYS THR GLN GLU LYS SEQRES 66 D 870 ALA THR PRO ARG ASN LEU PRO PRO ARG PHE GLN ASP GLY SEQRES 67 D 870 TYR TYR SER PRO HIS HIS HIS HIS HIS HIS HIS HIS HET ADP D1101 27 HET ALF D1102 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 ALF AL F4 1- FORMUL 4 HOH *108(H2 O) HELIX 1 AA1 ASP D 179 LYS D 194 1 16 HELIX 2 AA2 ASP D 196 GLU D 207 1 12 HELIX 3 AA3 LEU D 209 MET D 214 1 6 HELIX 4 AA4 MET D 214 HIS D 225 1 12 HELIX 5 AA5 GLY D 237 ARG D 253 1 17 HELIX 6 AA6 LYS D 255 ALA D 258 5 4 HELIX 7 AA7 ARG D 267 ARG D 282 1 16 HELIX 8 AA8 THR D 314 ASP D 324 1 11 HELIX 9 AA9 ASN D 342 LEU D 356 1 15 HELIX 10 AB1 ASN D 372 PHE D 380 1 9 HELIX 11 AB2 LEU D 399 ARG D 408 1 10 HELIX 12 AB3 TYR D 436 GLN D 454 1 19 HELIX 13 AB4 SER D 457 MET D 467 1 11 HELIX 14 AB5 ASP D 473 GLU D 488 1 16 HELIX 15 AB6 GLY D 499 SER D 512 1 14 HELIX 16 AB7 GLN D 513 SER D 518 1 6 HELIX 17 AB8 PRO D 531 GLN D 537 1 7 HELIX 18 AB9 VAL D 538 LYS D 540 5 3 HELIX 19 AC1 ASN D 554 GLU D 557 5 4 HELIX 20 AC2 SER D 594 GLY D 603 1 10 HELIX 21 AC3 ASN D 618 SER D 623 1 6 HELIX 22 AC4 PRO D 631 ARG D 635 5 5 HELIX 23 AC5 LEU D 638 LEU D 648 1 11 HELIX 24 AC6 GLY D 652 LEU D 660 1 9 HELIX 25 AC7 SER D 665 LEU D 679 1 15 HELIX 26 AC8 THR D 689 LEU D 698 1 10 HELIX 27 AC9 GLU D 701 PHE D 714 1 14 HELIX 28 AD1 CYS D 716 SER D 728 1 13 HELIX 29 AD2 LYS D 739 LYS D 752 1 14 HELIX 30 AD3 SER D 756 GLY D 775 1 20 HELIX 31 AD4 GLY D 775 TYR D 786 1 12 HELIX 32 AD5 SER D 789 ALA D 810 1 22 HELIX 33 AD6 ASP D 820 ASN D 824 5 5 HELIX 34 AD7 ASN D 829 TYR D 842 1 14 HELIX 35 AD8 SER D 906 GLY D 914 1 9 HELIX 36 AD9 PRO D 939 SER D 963 1 25 HELIX 37 AE1 SER D 974 THR D 989 1 16 SHEET 1 AA1 8 GLN D 299 ARG D 301 0 SHEET 2 AA1 8 THR D 292 ILE D 296 -1 N ILE D 296 O GLN D 299 SHEET 3 AA1 8 SER D 308 THR D 313 1 O TYR D 311 N GLY D 293 SHEET 4 AA1 8 ARG D 260 GLN D 265 1 N GLN D 265 O CYS D 312 SHEET 5 AA1 8 HIS D 332 LEU D 335 1 O VAL D 334 N VAL D 262 SHEET 6 AA1 8 LYS D 363 SER D 368 1 O VAL D 365 N LEU D 335 SHEET 7 AA1 8 VAL D 227 GLY D 232 1 N ILE D 230 O LEU D 366 SHEET 8 AA1 8 MET D 385 ILE D 388 1 O ILE D 388 N SER D 231 SHEET 1 AA2 6 VAL D 395 TYR D 398 0 SHEET 2 AA2 6 GLY D 611 HIS D 615 1 O CYS D 613 N VAL D 396 SHEET 3 AA2 6 VAL D 565 ASP D 570 1 N ASP D 570 O TYR D 614 SHEET 4 AA2 6 ALA D 492 PHE D 496 1 N LEU D 494 O ILE D 569 SHEET 5 AA2 6 ARG D 547 ALA D 552 1 O VAL D 550 N VAL D 495 SHEET 6 AA2 6 PHE D 521 LEU D 526 1 N ILE D 524 O ILE D 549 SHEET 1 AA3 2 LYS D 573 ASP D 580 0 SHEET 2 AA3 2 ILE D 585 TRP D 592 -1 O GLU D 591 N ILE D 574 SHEET 1 AA4 7 LYS D 891 ARG D 893 0 SHEET 2 AA4 7 ILE D 897 LEU D 899 -1 O TYR D 898 N MET D 892 SHEET 3 AA4 7 VAL D 866 ILE D 869 1 N ALA D 868 O ILE D 897 SHEET 4 AA4 7 LYS D 858 TYR D 860 -1 N VAL D 859 O VAL D 867 SHEET 5 AA4 7 VAL D 845 ARG D 849 -1 N LYS D 847 O TYR D 860 SHEET 6 AA4 7 TRP D 885 TYR D 888 -1 O LEU D 886 N ALA D 846 SHEET 7 AA4 7 CYS D 902 GLU D 904 -1 O THR D 903 N ILE D 887 SHEET 1 AA5 3 ILE D 917 GLN D 920 0 SHEET 2 AA5 3 THR D 927 VAL D 930 -1 O ALA D 929 N SER D 918 SHEET 3 AA5 3 ILE D 934 GLN D 937 -1 O ILE D 934 N VAL D 930 CISPEP 1 GLY D 738 LYS D 739 0 16.24 CISPEP 2 TYR D 842 PRO D 843 0 10.49 SITE 1 AC1 16 LEU D 209 GLY D 235 CYS D 236 GLY D 237 SITE 2 AC1 16 LYS D 238 THR D 239 THR D 240 ARG D 277 SITE 3 AC1 16 SER D 559 THR D 561 ASP D 563 ARG D 607 SITE 4 AC1 16 VAL D 608 ALF D1102 HOH D1211 HOH D1221 SITE 1 AC2 10 THR D 234 GLY D 235 LYS D 238 GLU D 337 SITE 2 AC2 10 ALA D 369 SER D 559 ARG D 604 ARG D 607 SITE 3 AC2 10 ADP D1101 HOH D1211 CRYST1 62.030 112.500 63.180 90.00 110.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016121 0.000000 0.005973 0.00000 SCALE2 0.000000 0.008889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016879 0.00000