HEADER MEMBRANE PROTEIN 19-APR-17 5VJ8 TITLE BACKBONE STRUCTURE OF THE YERSINIA PESTIS OUTER MEMBRANE PROTEIN AIL TITLE 2 IN PHOSPHOLIPID BILAYER NANODISC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESION INVASION LOCUS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATTACHMENT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: AVJ24_14645, AVO31_14870; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS ADHESION INVASION LOCUS, NANODISC, MEMBRANE PROTEIN, BETA-BARREL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.K.DUTTA,Y.YONG,F.M.MARASSI REVDAT 5 14-JUN-23 5VJ8 1 REMARK REVDAT 4 01-JAN-20 5VJ8 1 REMARK REVDAT 3 28-NOV-18 5VJ8 1 JRNL REVDAT 2 20-SEP-17 5VJ8 1 REMARK REVDAT 1 17-MAY-17 5VJ8 0 JRNL AUTH S.K.DUTTA,Y.YAO,F.M.MARASSI JRNL TITL STRUCTURAL INSIGHTS INTO THE YERSINIA PESTIS OUTER MEMBRANE JRNL TITL 2 PROTEIN AIL IN LIPID BILAYERS. JRNL REF J PHYS CHEM B V. 121 7561 2017 JRNL REFN ISSN 1520-5207 JRNL PMID 28726410 JRNL DOI 10.1021/ACS.JPCB.7B03941 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227519. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.66 MM [U-13C; U-15N; U-2H] REMARK 210 AIL, 49.5 MM DMPC, 16.5 MM DMPG, REMARK 210 5 MM SODIUM CHLORIDE, 25 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY; 3D TROSY-HNCA; REMARK 210 3D 15N-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, X-PLOR NIH REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 59 -51.45 -129.78 REMARK 500 1 ASN A 82 93.89 -175.25 REMARK 500 1 GLU A 83 44.13 39.69 REMARK 500 1 TYR A 84 -46.26 -141.62 REMARK 500 1 ALA A 98 52.54 -143.68 REMARK 500 1 SER A 101 -72.19 -147.37 REMARK 500 2 LYS A 24 -147.67 69.98 REMARK 500 2 ASN A 39 -54.96 -124.13 REMARK 500 2 ASP A 40 -55.22 -178.45 REMARK 500 2 PHE A 61 -54.43 79.58 REMARK 500 2 ASN A 82 93.59 -176.75 REMARK 500 2 GLU A 83 46.72 36.48 REMARK 500 2 TYR A 84 -45.96 -142.57 REMARK 500 2 ALA A 98 33.02 -155.04 REMARK 500 2 SER A 111 80.27 -168.29 REMARK 500 3 SER A 4 -88.28 -120.96 REMARK 500 3 PHE A 61 -70.31 77.83 REMARK 500 3 ASN A 82 92.82 -174.80 REMARK 500 3 GLU A 83 41.45 38.93 REMARK 500 3 TYR A 84 -45.62 -142.19 REMARK 500 3 SER A 107 -169.02 -169.33 REMARK 500 3 ASN A 128 -33.66 -162.99 REMARK 500 3 ASP A 141 -118.87 60.64 REMARK 500 4 ASP A 40 -33.74 179.78 REMARK 500 4 PHE A 61 114.87 75.84 REMARK 500 4 ASN A 82 94.09 -177.97 REMARK 500 4 GLU A 83 46.06 38.03 REMARK 500 4 TYR A 84 -43.34 -141.90 REMARK 500 5 GLU A 17 -55.70 -159.72 REMARK 500 5 TYR A 20 -64.71 -158.05 REMARK 500 5 LYS A 24 -173.28 68.91 REMARK 500 5 PHE A 61 -135.58 70.79 REMARK 500 5 ASN A 82 94.73 179.64 REMARK 500 5 TYR A 84 -43.35 -141.59 REMARK 500 5 SER A 109 -165.97 -164.45 REMARK 500 5 ASP A 142 -66.25 -103.68 REMARK 500 6 SER A 57 -48.72 -157.51 REMARK 500 6 ASN A 82 94.54 -179.24 REMARK 500 6 GLU A 83 45.88 39.63 REMARK 500 6 TYR A 84 -43.52 -141.46 REMARK 500 6 SER A 101 36.29 -143.11 REMARK 500 7 SER A 13 -165.89 -125.61 REMARK 500 7 ARG A 52 -67.67 -106.13 REMARK 500 7 ASN A 82 93.61 179.93 REMARK 500 7 GLU A 83 48.46 36.67 REMARK 500 7 TYR A 84 -43.52 -141.97 REMARK 500 7 PHE A 100 -51.59 -120.29 REMARK 500 7 SER A 101 -68.58 -169.90 REMARK 500 7 ARG A 110 -66.93 -105.64 REMARK 500 8 SER A 13 -157.05 -134.45 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2N2L RELATED DB: PDB REMARK 900 RELATED ID: 30284 RELATED DB: BMRB REMARK 900 BACKBONE STRUCTURE OF THE YERSINIA PESTIS OUTER MEMBRANE PROTEIN REMARK 900 AIL IN PHOSPHOLIPID BILAYER NANODISC DBREF1 5VJ8 A 1 156 UNP A0A154RMF1_YERPE DBREF2 5VJ8 A A0A154RMF1 24 179 SEQRES 1 A 156 GLU GLY GLU SER SER ILE SER ILE GLY TYR ALA GLN SER SEQRES 2 A 156 ARG VAL LYS GLU ASP GLY TYR LYS LEU ASP LYS ASN PRO SEQRES 3 A 156 ARG GLY PHE ASN LEU LYS TYR ARG TYR GLU PHE ASN ASN SEQRES 4 A 156 ASP TRP GLY VAL ILE GLY SER PHE ALA GLN THR ARG ARG SEQRES 5 A 156 GLY PHE GLU GLU SER VAL ASP GLY PHE LYS LEU ILE ASP SEQRES 6 A 156 GLY ASP PHE LYS TYR TYR SER VAL THR ALA GLY PRO VAL SEQRES 7 A 156 PHE ARG ILE ASN GLU TYR VAL SER LEU TYR GLY LEU LEU SEQRES 8 A 156 GLY ALA GLY HIS GLY LYS ALA LYS PHE SER SER ILE PHE SEQRES 9 A 156 GLY GLN SER GLU SER ARG SER LYS THR SER LEU ALA TYR SEQRES 10 A 156 GLY ALA GLY LEU GLN PHE ASN PRO HIS PRO ASN PHE VAL SEQRES 11 A 156 ILE ASP ALA SER TYR GLU TYR SER LYS LEU ASP ASP VAL SEQRES 12 A 156 LYS VAL GLY THR TRP MET LEU GLY ALA GLY TYR ARG PHE SHEET 1 AA1 9 SER A 5 ARG A 14 0 SHEET 2 AA1 9 ARG A 27 TYR A 35 -1 O LYS A 32 N SER A 7 SHEET 3 AA1 9 GLY A 42 GLU A 56 -1 O GLY A 45 N TYR A 33 SHEET 4 AA1 9 ILE A 64 ARG A 80 -1 O SER A 72 N ALA A 48 SHEET 5 AA1 9 SER A 86 LYS A 97 -1 O LEU A 87 N PHE A 79 SHEET 6 AA1 9 THR A 113 HIS A 126 -1 O SER A 114 N GLY A 94 SHEET 7 AA1 9 PHE A 129 SER A 138 -1 O TYR A 137 N TYR A 117 SHEET 8 AA1 9 VAL A 145 ARG A 155 -1 O THR A 147 N GLU A 136 SHEET 9 AA1 9 SER A 5 ARG A 14 -1 N GLN A 12 O TRP A 148 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1