data_5VL6 # _entry.id 5VL6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VL6 pdb_00005vl6 10.2210/pdb5vl6/pdb WWPDB D_1000226659 ? ? BMRB 30287 ? 10.13018/BMR30287 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-09-19 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5VL6 _pdbx_database_status.recvd_initial_deposition_date 2017-04-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS)' 30287 unspecified PDB . 5VLN unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bermudez, A.' 1 ? 'Patarroyo, M.E.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bermudez, A.' 1 ? primary 'Patarroyo, M.E.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Peptide 38138' _entity.formula_weight 1873.959 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS)' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NVHTFRGDNVHNSSSSL _entity_poly.pdbx_seq_one_letter_code_can NVHTFRGDNVHNSSSSL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 VAL n 1 3 HIS n 1 4 THR n 1 5 PHE n 1 6 ARG n 1 7 GLY n 1 8 ASP n 1 9 ASN n 1 10 VAL n 1 11 HIS n 1 12 ASN n 1 13 SER n 1 14 SER n 1 15 SER n 1 16 SER n 1 17 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Plasmodium falciparum' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5833 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VL6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5VL6 _struct.title 'Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VL6 _struct_keywords.text 'Modified peptide, Chemically synthesized, Pf-CelTOS, Alpha helix residues 8-14, CELL INVASION' _struct_keywords.pdbx_keywords 'CELL INVASION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5VL6 _struct_ref.pdbx_db_accession 5VL6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VL6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5VL6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 15 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 7 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 15 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.408 1.229 0.179 0.019 N 2 2 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.407 1.229 0.178 0.019 N 3 3 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.407 1.229 0.178 0.019 N 4 4 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.408 1.229 0.179 0.019 N 5 5 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.407 1.229 0.178 0.019 N 6 6 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.408 1.229 0.179 0.019 N 7 7 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.407 1.229 0.178 0.019 N 8 8 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.408 1.229 0.179 0.019 N 9 9 C A LEU 17 ? ? OXT A LEU 17 ? ? 1.407 1.229 0.178 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.29 111.50 8.79 1.30 N 2 1 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 123.94 120.30 3.64 0.50 N 3 1 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 123.72 118.30 5.42 0.90 N 4 1 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.20 118.30 -6.10 0.90 N 5 1 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.20 111.50 8.70 1.30 N 6 2 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.20 111.50 8.70 1.30 N 7 2 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 123.91 120.30 3.61 0.50 N 8 2 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.19 118.30 -6.11 0.90 N 9 2 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.26 111.50 8.76 1.30 N 10 3 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.22 111.50 8.72 1.30 N 11 3 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 123.97 120.30 3.67 0.50 N 12 3 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.40 118.30 -5.90 0.90 N 13 3 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.17 111.50 8.67 1.30 N 14 4 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.21 111.50 8.71 1.30 N 15 4 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 123.95 120.30 3.65 0.50 N 16 4 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.25 118.30 -6.05 0.90 N 17 4 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.27 111.50 8.77 1.30 N 18 5 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.19 111.50 8.69 1.30 N 19 5 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 123.94 120.30 3.64 0.50 N 20 5 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.38 118.30 -5.92 0.90 N 21 5 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.20 111.50 8.70 1.30 N 22 6 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.13 111.50 8.63 1.30 N 23 6 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 123.96 120.30 3.66 0.50 N 24 6 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.11 118.30 -6.19 0.90 N 25 6 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.27 111.50 8.77 1.30 N 26 7 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.30 111.50 8.80 1.30 N 27 7 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 124.01 120.30 3.71 0.50 N 28 7 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.17 118.30 -6.13 0.90 N 29 7 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.25 111.50 8.75 1.30 N 30 8 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.24 111.50 8.74 1.30 N 31 8 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 123.96 120.30 3.66 0.50 N 32 8 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.28 118.30 -6.02 0.90 N 33 8 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.21 111.50 8.71 1.30 N 34 9 ND1 A HIS 3 ? ? CE1 A HIS 3 ? ? NE2 A HIS 3 ? ? 120.33 111.50 8.83 1.30 N 35 9 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 124.17 120.30 3.87 0.50 N 36 9 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 112.48 118.30 -5.82 0.90 N 37 9 ND1 A HIS 11 ? ? CE1 A HIS 11 ? ? NE2 A HIS 11 ? ? 120.26 111.50 8.76 1.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 12 ? ? 71.79 47.14 2 1 SER A 15 ? ? 69.53 -15.65 3 1 SER A 16 ? ? 178.92 -37.38 4 2 VAL A 2 ? ? -126.22 -70.41 5 2 THR A 4 ? ? -97.79 39.93 6 2 PHE A 5 ? ? -79.73 -75.12 7 2 ASN A 12 ? ? 72.92 49.63 8 2 SER A 13 ? ? 60.57 67.23 9 2 SER A 15 ? ? 68.42 -13.41 10 2 SER A 16 ? ? -177.94 -40.18 11 3 THR A 4 ? ? -98.08 36.16 12 3 PHE A 5 ? ? -77.25 -75.63 13 3 ASN A 12 ? ? 72.96 48.70 14 3 SER A 13 ? ? 60.51 67.52 15 3 SER A 15 ? ? 68.84 -13.89 16 3 SER A 16 ? ? -178.51 -40.07 17 4 ASN A 12 ? ? 71.92 49.19 18 4 SER A 13 ? ? 61.87 68.41 19 4 SER A 16 ? ? -163.46 -64.01 20 5 THR A 4 ? ? 79.07 53.97 21 5 ARG A 6 ? ? 65.04 61.63 22 5 ASN A 12 ? ? 74.15 47.29 23 5 SER A 15 ? ? 69.80 -15.06 24 5 SER A 16 ? ? -174.40 -49.66 25 6 VAL A 2 ? ? 69.18 -31.99 26 6 ASN A 12 ? ? 70.71 49.19 27 6 SER A 13 ? ? 61.94 69.38 28 6 SER A 16 ? ? -164.10 -62.48 29 7 THR A 4 ? ? 37.52 34.96 30 7 PHE A 5 ? ? -167.19 -40.49 31 7 ASP A 8 ? ? 73.61 37.33 32 7 ASN A 12 ? ? 72.66 47.05 33 7 SER A 15 ? ? 69.80 -16.09 34 7 SER A 16 ? ? 178.76 -37.38 35 8 THR A 4 ? ? -96.91 32.31 36 8 PHE A 5 ? ? -74.09 -73.56 37 8 ASN A 12 ? ? 72.95 48.64 38 8 SER A 13 ? ? 61.11 67.10 39 8 SER A 15 ? ? 68.77 -13.89 40 8 SER A 16 ? ? -178.31 -40.02 41 9 THR A 4 ? ? 79.24 53.15 42 9 ARG A 6 ? ? 67.65 62.23 43 9 ASN A 12 ? ? 71.85 48.01 44 9 SER A 13 ? ? 61.16 68.20 45 9 SER A 15 ? ? 68.84 -13.55 46 9 SER A 16 ? ? -177.83 -40.05 # _pdbx_nmr_ensemble.entry_id 5VL6 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' # _pdbx_nmr_representative.entry_id 5VL6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '16.6 mg/mL 38138, trifluoroethanol/water' _pdbx_nmr_sample_details.solvent_system trifluoroethanol/water _pdbx_nmr_sample_details.label 38138 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS)' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 38138 _pdbx_nmr_exptl_sample.concentration 16.6 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 295 mmHg 'AMBIENT ATM' 3.7 NULL 'TEMPERATURE AMBIENT' ? 'Not defined' '38138 (295)' 0.1 pH ? 0.1 K 2 285 mmHg 'AMBIENT ATM' 3.7 NULL 'TEMPERATURE 285 K' ? 'Not defined' '38138 (285)' 0.1 pH ? 0.1 K 3 305 mmHg 'AMBIENT ATM' 3.7 NULL 'TEMPERATURE 305 K' ? 'Not defined' '38138 (305)' 0.1 pH ? 0.1 K 4 315 mmHg 'AMBIENT ATM' 3.7 NULL 'TEMPERATURE 315 K' ? 'Not defined' '38138 (315)' 0.1 pH ? 0.1 K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D DQF-COSY; 2D 1H-1H TOCSY; 2D 1H-1H NOESY' 1 anisotropic 2 2 1 '2D 1H-1H TOCSY' 1 anisotropic 3 3 1 '2D 1H-1H TOCSY' 1 anisotropic 4 4 1 '2D 1H-1H TOCSY' 1 anisotropic # _pdbx_nmr_details.entry_id 5VL6 _pdbx_nmr_details.text NULL # _pdbx_nmr_refine.entry_id 5VL6 _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details '193 NOES' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'Insight II' ? 'ACCELRYS SOFTWARE INC.' 1 'structure solution' 'Insight II' ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 ASP N N N N 45 ASP CA C N S 46 ASP C C N N 47 ASP O O N N 48 ASP CB C N N 49 ASP CG C N N 50 ASP OD1 O N N 51 ASP OD2 O N N 52 ASP OXT O N N 53 ASP H H N N 54 ASP H2 H N N 55 ASP HA H N N 56 ASP HB2 H N N 57 ASP HB3 H N N 58 ASP HD2 H N N 59 ASP HXT H N N 60 GLY N N N N 61 GLY CA C N N 62 GLY C C N N 63 GLY O O N N 64 GLY OXT O N N 65 GLY H H N N 66 GLY H2 H N N 67 GLY HA2 H N N 68 GLY HA3 H N N 69 GLY HXT H N N 70 HIS N N N N 71 HIS CA C N S 72 HIS C C N N 73 HIS O O N N 74 HIS CB C N N 75 HIS CG C Y N 76 HIS ND1 N Y N 77 HIS CD2 C Y N 78 HIS CE1 C Y N 79 HIS NE2 N Y N 80 HIS OXT O N N 81 HIS H H N N 82 HIS H2 H N N 83 HIS HA H N N 84 HIS HB2 H N N 85 HIS HB3 H N N 86 HIS HD1 H N N 87 HIS HD2 H N N 88 HIS HE1 H N N 89 HIS HE2 H N N 90 HIS HXT H N N 91 LEU N N N N 92 LEU CA C N S 93 LEU C C N N 94 LEU O O N N 95 LEU CB C N N 96 LEU CG C N N 97 LEU CD1 C N N 98 LEU CD2 C N N 99 LEU OXT O N N 100 LEU H H N N 101 LEU H2 H N N 102 LEU HA H N N 103 LEU HB2 H N N 104 LEU HB3 H N N 105 LEU HG H N N 106 LEU HD11 H N N 107 LEU HD12 H N N 108 LEU HD13 H N N 109 LEU HD21 H N N 110 LEU HD22 H N N 111 LEU HD23 H N N 112 LEU HXT H N N 113 PHE N N N N 114 PHE CA C N S 115 PHE C C N N 116 PHE O O N N 117 PHE CB C N N 118 PHE CG C Y N 119 PHE CD1 C Y N 120 PHE CD2 C Y N 121 PHE CE1 C Y N 122 PHE CE2 C Y N 123 PHE CZ C Y N 124 PHE OXT O N N 125 PHE H H N N 126 PHE H2 H N N 127 PHE HA H N N 128 PHE HB2 H N N 129 PHE HB3 H N N 130 PHE HD1 H N N 131 PHE HD2 H N N 132 PHE HE1 H N N 133 PHE HE2 H N N 134 PHE HZ H N N 135 PHE HXT H N N 136 SER N N N N 137 SER CA C N S 138 SER C C N N 139 SER O O N N 140 SER CB C N N 141 SER OG O N N 142 SER OXT O N N 143 SER H H N N 144 SER H2 H N N 145 SER HA H N N 146 SER HB2 H N N 147 SER HB3 H N N 148 SER HG H N N 149 SER HXT H N N 150 THR N N N N 151 THR CA C N S 152 THR C C N N 153 THR O O N N 154 THR CB C N R 155 THR OG1 O N N 156 THR CG2 C N N 157 THR OXT O N N 158 THR H H N N 159 THR H2 H N N 160 THR HA H N N 161 THR HB H N N 162 THR HG1 H N N 163 THR HG21 H N N 164 THR HG22 H N N 165 THR HG23 H N N 166 THR HXT H N N 167 VAL N N N N 168 VAL CA C N S 169 VAL C C N N 170 VAL O O N N 171 VAL CB C N N 172 VAL CG1 C N N 173 VAL CG2 C N N 174 VAL OXT O N N 175 VAL H H N N 176 VAL H2 H N N 177 VAL HA H N N 178 VAL HB H N N 179 VAL HG11 H N N 180 VAL HG12 H N N 181 VAL HG13 H N N 182 VAL HG21 H N N 183 VAL HG22 H N N 184 VAL HG23 H N N 185 VAL HXT H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 ASP N CA sing N N 43 ASP N H sing N N 44 ASP N H2 sing N N 45 ASP CA C sing N N 46 ASP CA CB sing N N 47 ASP CA HA sing N N 48 ASP C O doub N N 49 ASP C OXT sing N N 50 ASP CB CG sing N N 51 ASP CB HB2 sing N N 52 ASP CB HB3 sing N N 53 ASP CG OD1 doub N N 54 ASP CG OD2 sing N N 55 ASP OD2 HD2 sing N N 56 ASP OXT HXT sing N N 57 GLY N CA sing N N 58 GLY N H sing N N 59 GLY N H2 sing N N 60 GLY CA C sing N N 61 GLY CA HA2 sing N N 62 GLY CA HA3 sing N N 63 GLY C O doub N N 64 GLY C OXT sing N N 65 GLY OXT HXT sing N N 66 HIS N CA sing N N 67 HIS N H sing N N 68 HIS N H2 sing N N 69 HIS CA C sing N N 70 HIS CA CB sing N N 71 HIS CA HA sing N N 72 HIS C O doub N N 73 HIS C OXT sing N N 74 HIS CB CG sing N N 75 HIS CB HB2 sing N N 76 HIS CB HB3 sing N N 77 HIS CG ND1 sing Y N 78 HIS CG CD2 doub Y N 79 HIS ND1 CE1 doub Y N 80 HIS ND1 HD1 sing N N 81 HIS CD2 NE2 sing Y N 82 HIS CD2 HD2 sing N N 83 HIS CE1 NE2 sing Y N 84 HIS CE1 HE1 sing N N 85 HIS NE2 HE2 sing N N 86 HIS OXT HXT sing N N 87 LEU N CA sing N N 88 LEU N H sing N N 89 LEU N H2 sing N N 90 LEU CA C sing N N 91 LEU CA CB sing N N 92 LEU CA HA sing N N 93 LEU C O doub N N 94 LEU C OXT sing N N 95 LEU CB CG sing N N 96 LEU CB HB2 sing N N 97 LEU CB HB3 sing N N 98 LEU CG CD1 sing N N 99 LEU CG CD2 sing N N 100 LEU CG HG sing N N 101 LEU CD1 HD11 sing N N 102 LEU CD1 HD12 sing N N 103 LEU CD1 HD13 sing N N 104 LEU CD2 HD21 sing N N 105 LEU CD2 HD22 sing N N 106 LEU CD2 HD23 sing N N 107 LEU OXT HXT sing N N 108 PHE N CA sing N N 109 PHE N H sing N N 110 PHE N H2 sing N N 111 PHE CA C sing N N 112 PHE CA CB sing N N 113 PHE CA HA sing N N 114 PHE C O doub N N 115 PHE C OXT sing N N 116 PHE CB CG sing N N 117 PHE CB HB2 sing N N 118 PHE CB HB3 sing N N 119 PHE CG CD1 doub Y N 120 PHE CG CD2 sing Y N 121 PHE CD1 CE1 sing Y N 122 PHE CD1 HD1 sing N N 123 PHE CD2 CE2 doub Y N 124 PHE CD2 HD2 sing N N 125 PHE CE1 CZ doub Y N 126 PHE CE1 HE1 sing N N 127 PHE CE2 CZ sing Y N 128 PHE CE2 HE2 sing N N 129 PHE CZ HZ sing N N 130 PHE OXT HXT sing N N 131 SER N CA sing N N 132 SER N H sing N N 133 SER N H2 sing N N 134 SER CA C sing N N 135 SER CA CB sing N N 136 SER CA HA sing N N 137 SER C O doub N N 138 SER C OXT sing N N 139 SER CB OG sing N N 140 SER CB HB2 sing N N 141 SER CB HB3 sing N N 142 SER OG HG sing N N 143 SER OXT HXT sing N N 144 THR N CA sing N N 145 THR N H sing N N 146 THR N H2 sing N N 147 THR CA C sing N N 148 THR CA CB sing N N 149 THR CA HA sing N N 150 THR C O doub N N 151 THR C OXT sing N N 152 THR CB OG1 sing N N 153 THR CB CG2 sing N N 154 THR CB HB sing N N 155 THR OG1 HG1 sing N N 156 THR CG2 HG21 sing N N 157 THR CG2 HG22 sing N N 158 THR CG2 HG23 sing N N 159 THR OXT HXT sing N N 160 VAL N CA sing N N 161 VAL N H sing N N 162 VAL N H2 sing N N 163 VAL CA C sing N N 164 VAL CA CB sing N N 165 VAL CA HA sing N N 166 VAL C O doub N N 167 VAL C OXT sing N N 168 VAL CB CG1 sing N N 169 VAL CB CG2 sing N N 170 VAL CB HB sing N N 171 VAL CG1 HG11 sing N N 172 VAL CG1 HG12 sing N N 173 VAL CG1 HG13 sing N N 174 VAL CG2 HG21 sing N N 175 VAL CG2 HG22 sing N N 176 VAL CG2 HG23 sing N N 177 VAL OXT HXT sing N N 178 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 5VL6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_