data_5VMN # _entry.id 5VMN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VMN pdb_00005vmn 10.2210/pdb5vmn/pdb WWPDB D_1000227680 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-07 2 'Structure model' 1 1 2018-03-14 3 'Structure model' 1 2 2018-04-25 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation.title' 9 4 'Structure model' '_database_2.pdbx_DOI' 10 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VMN _pdbx_database_status.recvd_initial_deposition_date 2017-04-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5VMO _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Banjara, S.' 1 ? 'Kvansakul, M.' 2 0000-0003-2639-2498 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 293 _citation.language ? _citation.page_first 5464 _citation.page_last 5477 _citation.title 'Grouper iridovirus GIV66 is a Bcl-2 protein that inhibits apoptosis by exclusively sequestering Bim.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA117.000591 _citation.pdbx_database_id_PubMed 29483196 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Banjara, S.' 1 ? primary 'Mao, J.' 2 ? primary 'Ryan, T.M.' 3 ? primary 'Caria, S.' 4 ? primary 'Kvansakul, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bak protein' 14943.972 1 ? ? 'UNP residues 1-127' ? 2 non-polymer syn 'NITRATE ION' 62.005 8 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 6 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSMTNINFSALLRGERMCPLTREIHSQMLIVTKSYSLVETFRAFPRLPNILEIGNNIVSDGNLNWGRILILLGISQL YFTKSESESERTQITEQLERFFRQDAISNWIASNGGWVTCASLDLRNYSSVT ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMTNINFSALLRGERMCPLTREIHSQMLIVTKSYSLVETFRAFPRLPNILEIGNNIVSDGNLNWGRILILLGISQL YFTKSESESERTQITEQLERFFRQDAISNWIASNGGWVTCASLDLRNYSSVT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 THR n 1 8 ASN n 1 9 ILE n 1 10 ASN n 1 11 PHE n 1 12 SER n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 ARG n 1 17 GLY n 1 18 GLU n 1 19 ARG n 1 20 MET n 1 21 CYS n 1 22 PRO n 1 23 LEU n 1 24 THR n 1 25 ARG n 1 26 GLU n 1 27 ILE n 1 28 HIS n 1 29 SER n 1 30 GLN n 1 31 MET n 1 32 LEU n 1 33 ILE n 1 34 VAL n 1 35 THR n 1 36 LYS n 1 37 SER n 1 38 TYR n 1 39 SER n 1 40 LEU n 1 41 VAL n 1 42 GLU n 1 43 THR n 1 44 PHE n 1 45 ARG n 1 46 ALA n 1 47 PHE n 1 48 PRO n 1 49 ARG n 1 50 LEU n 1 51 PRO n 1 52 ASN n 1 53 ILE n 1 54 LEU n 1 55 GLU n 1 56 ILE n 1 57 GLY n 1 58 ASN n 1 59 ASN n 1 60 ILE n 1 61 VAL n 1 62 SER n 1 63 ASP n 1 64 GLY n 1 65 ASN n 1 66 LEU n 1 67 ASN n 1 68 TRP n 1 69 GLY n 1 70 ARG n 1 71 ILE n 1 72 LEU n 1 73 ILE n 1 74 LEU n 1 75 LEU n 1 76 GLY n 1 77 ILE n 1 78 SER n 1 79 GLN n 1 80 LEU n 1 81 TYR n 1 82 PHE n 1 83 THR n 1 84 LYS n 1 85 SER n 1 86 GLU n 1 87 SER n 1 88 GLU n 1 89 SER n 1 90 GLU n 1 91 ARG n 1 92 THR n 1 93 GLN n 1 94 ILE n 1 95 THR n 1 96 GLU n 1 97 GLN n 1 98 LEU n 1 99 GLU n 1 100 ARG n 1 101 PHE n 1 102 PHE n 1 103 ARG n 1 104 GLN n 1 105 ASP n 1 106 ALA n 1 107 ILE n 1 108 SER n 1 109 ASN n 1 110 TRP n 1 111 ILE n 1 112 ALA n 1 113 SER n 1 114 ASN n 1 115 GLY n 1 116 GLY n 1 117 TRP n 1 118 VAL n 1 119 THR n 1 120 CYS n 1 121 ALA n 1 122 SER n 1 123 LEU n 1 124 ASP n 1 125 LEU n 1 126 ARG n 1 127 ASN n 1 128 TYR n 1 129 SER n 1 130 SER n 1 131 VAL n 1 132 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 132 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GIV66 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Grouper iridovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 127569 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 -4 GLY GLY A . n A 1 2 PRO 2 -3 -3 PRO PRO A . n A 1 3 LEU 3 -2 -2 LEU LEU A . n A 1 4 GLY 4 -1 -1 GLY GLY A . n A 1 5 SER 5 0 0 SER SER A . n A 1 6 MET 6 1 1 MET MET A . n A 1 7 THR 7 2 2 THR THR A . n A 1 8 ASN 8 3 3 ASN ASN A . n A 1 9 ILE 9 4 4 ILE ILE A . n A 1 10 ASN 10 5 5 ASN ASN A . n A 1 11 PHE 11 6 6 PHE PHE A . n A 1 12 SER 12 7 7 SER SER A . n A 1 13 ALA 13 8 8 ALA ALA A . n A 1 14 LEU 14 9 9 LEU LEU A . n A 1 15 LEU 15 10 10 LEU LEU A . n A 1 16 ARG 16 11 11 ARG ARG A . n A 1 17 GLY 17 12 12 GLY GLY A . n A 1 18 GLU 18 13 13 GLU GLU A . n A 1 19 ARG 19 14 14 ARG ARG A . n A 1 20 MET 20 15 15 MET MET A . n A 1 21 CYS 21 16 16 CYS CYS A . n A 1 22 PRO 22 17 17 PRO PRO A . n A 1 23 LEU 23 18 18 LEU LEU A . n A 1 24 THR 24 19 19 THR THR A . n A 1 25 ARG 25 20 20 ARG ARG A . n A 1 26 GLU 26 21 21 GLU GLU A . n A 1 27 ILE 27 22 22 ILE ILE A . n A 1 28 HIS 28 23 23 HIS HIS A . n A 1 29 SER 29 24 24 SER SER A . n A 1 30 GLN 30 25 25 GLN GLN A . n A 1 31 MET 31 26 26 MET MET A . n A 1 32 LEU 32 27 27 LEU LEU A . n A 1 33 ILE 33 28 28 ILE ILE A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 THR 35 30 30 THR THR A . n A 1 36 LYS 36 31 31 LYS LYS A . n A 1 37 SER 37 32 32 SER SER A . n A 1 38 TYR 38 33 33 TYR TYR A . n A 1 39 SER 39 34 34 SER SER A . n A 1 40 LEU 40 35 35 LEU LEU A . n A 1 41 VAL 41 36 36 VAL VAL A . n A 1 42 GLU 42 37 37 GLU GLU A . n A 1 43 THR 43 38 38 THR THR A . n A 1 44 PHE 44 39 39 PHE PHE A . n A 1 45 ARG 45 40 40 ARG ARG A . n A 1 46 ALA 46 41 41 ALA ALA A . n A 1 47 PHE 47 42 42 PHE PHE A . n A 1 48 PRO 48 43 43 PRO PRO A . n A 1 49 ARG 49 44 44 ARG ARG A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 PRO 51 46 46 PRO PRO A . n A 1 52 ASN 52 47 47 ASN ASN A . n A 1 53 ILE 53 48 48 ILE ILE A . n A 1 54 LEU 54 49 49 LEU LEU A . n A 1 55 GLU 55 50 50 GLU GLU A . n A 1 56 ILE 56 51 51 ILE ILE A . n A 1 57 GLY 57 52 52 GLY GLY A . n A 1 58 ASN 58 53 53 ASN ASN A . n A 1 59 ASN 59 54 54 ASN ASN A . n A 1 60 ILE 60 55 55 ILE ILE A . n A 1 61 VAL 61 56 56 VAL VAL A . n A 1 62 SER 62 57 57 SER SER A . n A 1 63 ASP 63 58 58 ASP ASP A . n A 1 64 GLY 64 59 59 GLY GLY A . n A 1 65 ASN 65 60 60 ASN ASN A . n A 1 66 LEU 66 61 61 LEU LEU A . n A 1 67 ASN 67 62 62 ASN ASN A . n A 1 68 TRP 68 63 63 TRP TRP A . n A 1 69 GLY 69 64 64 GLY GLY A . n A 1 70 ARG 70 65 65 ARG ARG A . n A 1 71 ILE 71 66 66 ILE ILE A . n A 1 72 LEU 72 67 67 LEU LEU A . n A 1 73 ILE 73 68 68 ILE ILE A . n A 1 74 LEU 74 69 69 LEU LEU A . n A 1 75 LEU 75 70 70 LEU LEU A . n A 1 76 GLY 76 71 71 GLY GLY A . n A 1 77 ILE 77 72 72 ILE ILE A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 GLN 79 74 74 GLN GLN A . n A 1 80 LEU 80 75 75 LEU LEU A . n A 1 81 TYR 81 76 76 TYR TYR A . n A 1 82 PHE 82 77 77 PHE PHE A . n A 1 83 THR 83 78 78 THR THR A . n A 1 84 LYS 84 79 79 LYS LYS A . n A 1 85 SER 85 80 80 SER SER A . n A 1 86 GLU 86 81 81 GLU GLU A . n A 1 87 SER 87 82 82 SER SER A . n A 1 88 GLU 88 83 83 GLU GLU A . n A 1 89 SER 89 84 84 SER SER A . n A 1 90 GLU 90 85 85 GLU GLU A . n A 1 91 ARG 91 86 86 ARG ARG A . n A 1 92 THR 92 87 87 THR THR A . n A 1 93 GLN 93 88 88 GLN GLN A . n A 1 94 ILE 94 89 89 ILE ILE A . n A 1 95 THR 95 90 90 THR THR A . n A 1 96 GLU 96 91 91 GLU GLU A . n A 1 97 GLN 97 92 92 GLN GLN A . n A 1 98 LEU 98 93 93 LEU LEU A . n A 1 99 GLU 99 94 94 GLU GLU A . n A 1 100 ARG 100 95 95 ARG ARG A . n A 1 101 PHE 101 96 96 PHE PHE A . n A 1 102 PHE 102 97 97 PHE PHE A . n A 1 103 ARG 103 98 98 ARG ARG A . n A 1 104 GLN 104 99 99 GLN GLN A . n A 1 105 ASP 105 100 100 ASP ASP A . n A 1 106 ALA 106 101 101 ALA ALA A . n A 1 107 ILE 107 102 102 ILE ILE A . n A 1 108 SER 108 103 103 SER SER A . n A 1 109 ASN 109 104 104 ASN ASN A . n A 1 110 TRP 110 105 105 TRP TRP A . n A 1 111 ILE 111 106 106 ILE ILE A . n A 1 112 ALA 112 107 107 ALA ALA A . n A 1 113 SER 113 108 108 SER SER A . n A 1 114 ASN 114 109 109 ASN ASN A . n A 1 115 GLY 115 110 110 GLY GLY A . n A 1 116 GLY 116 111 111 GLY GLY A . n A 1 117 TRP 117 112 112 TRP TRP A . n A 1 118 VAL 118 113 113 VAL VAL A . n A 1 119 THR 119 114 114 THR THR A . n A 1 120 CYS 120 115 115 CYS CYS A . n A 1 121 ALA 121 116 116 ALA ALA A . n A 1 122 SER 122 117 117 SER SER A . n A 1 123 LEU 123 118 118 LEU LEU A . n A 1 124 ASP 124 119 119 ASP ASP A . n A 1 125 LEU 125 120 120 LEU LEU A . n A 1 126 ARG 126 121 ? ? ? A . n A 1 127 ASN 127 122 ? ? ? A . n A 1 128 TYR 128 123 ? ? ? A . n A 1 129 SER 129 124 ? ? ? A . n A 1 130 SER 130 125 ? ? ? A . n A 1 131 VAL 131 126 ? ? ? A . n A 1 132 THR 132 127 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 1 201 1 NO3 NO3 A . C 2 NO3 1 202 2 NO3 NO3 A . D 2 NO3 1 203 3 NO3 NO3 A . E 2 NO3 1 204 4 NO3 NO3 A . F 2 NO3 1 205 5 NO3 NO3 A . G 2 NO3 1 206 6 NO3 NO3 A . H 2 NO3 1 207 7 NO3 NO3 A . I 2 NO3 1 208 8 NO3 NO3 A . J 3 EDO 1 209 2 EDO EDO A . K 3 EDO 1 210 4 EDO EDO A . L 3 EDO 1 211 5 EDO EDO A . M 3 EDO 1 212 6 EDO EDO A . N 3 EDO 1 213 7 EDO EDO A . O 3 EDO 1 214 8 EDO EDO A . P 4 HOH 1 301 22 HOH HOH A . P 4 HOH 2 302 83 HOH HOH A . P 4 HOH 3 303 21 HOH HOH A . P 4 HOH 4 304 99 HOH HOH A . P 4 HOH 5 305 109 HOH HOH A . P 4 HOH 6 306 71 HOH HOH A . P 4 HOH 7 307 14 HOH HOH A . P 4 HOH 8 308 113 HOH HOH A . P 4 HOH 9 309 10 HOH HOH A . P 4 HOH 10 310 77 HOH HOH A . P 4 HOH 11 311 66 HOH HOH A . P 4 HOH 12 312 86 HOH HOH A . P 4 HOH 13 313 58 HOH HOH A . P 4 HOH 14 314 31 HOH HOH A . P 4 HOH 15 315 70 HOH HOH A . P 4 HOH 16 316 45 HOH HOH A . P 4 HOH 17 317 51 HOH HOH A . P 4 HOH 18 318 72 HOH HOH A . P 4 HOH 19 319 52 HOH HOH A . P 4 HOH 20 320 3 HOH HOH A . P 4 HOH 21 321 88 HOH HOH A . P 4 HOH 22 322 53 HOH HOH A . P 4 HOH 23 323 47 HOH HOH A . P 4 HOH 24 324 20 HOH HOH A . P 4 HOH 25 325 50 HOH HOH A . P 4 HOH 26 326 37 HOH HOH A . P 4 HOH 27 327 6 HOH HOH A . P 4 HOH 28 328 105 HOH HOH A . P 4 HOH 29 329 102 HOH HOH A . P 4 HOH 30 330 74 HOH HOH A . P 4 HOH 31 331 89 HOH HOH A . P 4 HOH 32 332 81 HOH HOH A . P 4 HOH 33 333 16 HOH HOH A . P 4 HOH 34 334 25 HOH HOH A . P 4 HOH 35 335 23 HOH HOH A . P 4 HOH 36 336 54 HOH HOH A . P 4 HOH 37 337 9 HOH HOH A . P 4 HOH 38 338 100 HOH HOH A . P 4 HOH 39 339 19 HOH HOH A . P 4 HOH 40 340 90 HOH HOH A . P 4 HOH 41 341 12 HOH HOH A . P 4 HOH 42 342 5 HOH HOH A . P 4 HOH 43 343 29 HOH HOH A . P 4 HOH 44 344 15 HOH HOH A . P 4 HOH 45 345 35 HOH HOH A . P 4 HOH 46 346 1 HOH HOH A . P 4 HOH 47 347 106 HOH HOH A . P 4 HOH 48 348 44 HOH HOH A . P 4 HOH 49 349 65 HOH HOH A . P 4 HOH 50 350 40 HOH HOH A . P 4 HOH 51 351 8 HOH HOH A . P 4 HOH 52 352 11 HOH HOH A . P 4 HOH 53 353 63 HOH HOH A . P 4 HOH 54 354 26 HOH HOH A . P 4 HOH 55 355 28 HOH HOH A . P 4 HOH 56 356 4 HOH HOH A . P 4 HOH 57 357 2 HOH HOH A . P 4 HOH 58 358 62 HOH HOH A . P 4 HOH 59 359 27 HOH HOH A . P 4 HOH 60 360 46 HOH HOH A . P 4 HOH 61 361 7 HOH HOH A . P 4 HOH 62 362 101 HOH HOH A . P 4 HOH 63 363 48 HOH HOH A . P 4 HOH 64 364 38 HOH HOH A . P 4 HOH 65 365 69 HOH HOH A . P 4 HOH 66 366 87 HOH HOH A . P 4 HOH 67 367 34 HOH HOH A . P 4 HOH 68 368 118 HOH HOH A . P 4 HOH 69 369 96 HOH HOH A . P 4 HOH 70 370 84 HOH HOH A . P 4 HOH 71 371 68 HOH HOH A . P 4 HOH 72 372 30 HOH HOH A . P 4 HOH 73 373 82 HOH HOH A . P 4 HOH 74 374 36 HOH HOH A . P 4 HOH 75 375 56 HOH HOH A . P 4 HOH 76 376 91 HOH HOH A . P 4 HOH 77 377 107 HOH HOH A . P 4 HOH 78 378 76 HOH HOH A . P 4 HOH 79 379 97 HOH HOH A . P 4 HOH 80 380 24 HOH HOH A . P 4 HOH 81 381 108 HOH HOH A . P 4 HOH 82 382 103 HOH HOH A . P 4 HOH 83 383 92 HOH HOH A . P 4 HOH 84 384 67 HOH HOH A . P 4 HOH 85 385 114 HOH HOH A . P 4 HOH 86 386 42 HOH HOH A . P 4 HOH 87 387 111 HOH HOH A . P 4 HOH 88 388 61 HOH HOH A . P 4 HOH 89 389 110 HOH HOH A . P 4 HOH 90 390 49 HOH HOH A . P 4 HOH 91 391 55 HOH HOH A . P 4 HOH 92 392 57 HOH HOH A . P 4 HOH 93 393 117 HOH HOH A . P 4 HOH 94 394 79 HOH HOH A . P 4 HOH 95 395 59 HOH HOH A . P 4 HOH 96 396 115 HOH HOH A . P 4 HOH 97 397 41 HOH HOH A . P 4 HOH 98 398 95 HOH HOH A . P 4 HOH 99 399 33 HOH HOH A . P 4 HOH 100 400 85 HOH HOH A . P 4 HOH 101 401 116 HOH HOH A . P 4 HOH 102 402 112 HOH HOH A . P 4 HOH 103 403 17 HOH HOH A . P 4 HOH 104 404 60 HOH HOH A . P 4 HOH 105 405 43 HOH HOH A . P 4 HOH 106 406 64 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 # _cell.entry_id 5VMN _cell.length_a 68.033 _cell.length_b 68.033 _cell.length_c 85.824 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VMN _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VMN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4.0 M sodium nitrate with 0.1 M sodium acetate pH 4.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9537 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX1 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VMN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 42.91 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24871 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1219 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.395 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 11.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.396 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5VMN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24871 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.964 _refine.ls_d_res_high 1.650 _refine.ls_percent_reflns_obs 99.88 _refine.ls_R_factor_obs 0.1847 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1833 _refine.ls_R_factor_R_free 0.2142 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.87 _refine.ls_number_reflns_R_free 1210 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 22.60 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 992 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1154 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 41.964 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1052 'X-RAY DIFFRACTION' ? f_angle_d 1.017 ? ? 1403 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.821 ? ? 611 'X-RAY DIFFRACTION' ? f_chiral_restr 0.051 ? ? 156 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 183 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.6500 1.7161 2589 0.3256 100.00 0.3617 . . 127 . . 'X-RAY DIFFRACTION' . 1.7161 1.7942 2554 0.2882 100.00 0.3051 . . 154 . . 'X-RAY DIFFRACTION' . 1.7942 1.8888 2595 0.2309 100.00 0.2813 . . 127 . . 'X-RAY DIFFRACTION' . 1.8888 2.0071 2593 0.1995 100.00 0.2498 . . 137 . . 'X-RAY DIFFRACTION' . 2.0071 2.1621 2598 0.1654 100.00 0.2193 . . 115 . . 'X-RAY DIFFRACTION' . 2.1621 2.3796 2614 0.1615 100.00 0.1646 . . 145 . . 'X-RAY DIFFRACTION' . 2.3796 2.7239 2646 0.1602 100.00 0.1841 . . 132 . . 'X-RAY DIFFRACTION' . 2.7239 3.4316 2686 0.1770 100.00 0.2035 . . 124 . . 'X-RAY DIFFRACTION' . 3.4316 41.9774 2786 0.1815 99.00 0.2175 . . 149 . . # _struct.entry_id 5VMN _struct.title 'Crystal structure of grouper iridovirus GIV66' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VMN _struct_keywords.text 'Apoptosis, Bcl-2, iridovirus, grouper, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5GAF0_9VIRU _struct_ref.pdbx_db_accession Q5GAF0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTNINFSALLRGERMCPLTREIHSQMLIVTKSYSLVETFRAFPRLPNILEIGNNIVSDGNLNWGRILILLGISQLYFTKS ESESERTQITEQLERFFRQDAISNWIASNGGWVTCASLDLRNYSSVT ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VMN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 132 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5GAF0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VMN GLY A 1 ? UNP Q5GAF0 ? ? 'expression tag' -4 1 1 5VMN PRO A 2 ? UNP Q5GAF0 ? ? 'expression tag' -3 2 1 5VMN LEU A 3 ? UNP Q5GAF0 ? ? 'expression tag' -2 3 1 5VMN GLY A 4 ? UNP Q5GAF0 ? ? 'expression tag' -1 4 1 5VMN SER A 5 ? UNP Q5GAF0 ? ? 'expression tag' 0 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details 'Dimer as shown by SEC-SAXS' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 10 ? GLY A 17 ? ASN A 5 GLY A 12 1 ? 8 HELX_P HELX_P2 AA2 CYS A 21 ? TYR A 38 ? CYS A 16 TYR A 33 1 ? 18 HELX_P HELX_P3 AA3 SER A 39 ? ARG A 45 ? SER A 34 ARG A 40 1 ? 7 HELX_P HELX_P4 AA4 ASN A 52 ? VAL A 61 ? ASN A 47 VAL A 56 1 ? 10 HELX_P HELX_P5 AA5 ASN A 67 ? SER A 85 ? ASN A 62 SER A 80 1 ? 19 HELX_P HELX_P6 AA6 SER A 87 ? GLN A 104 ? SER A 82 GLN A 99 1 ? 18 HELX_P HELX_P7 AA7 GLN A 104 ? ASN A 114 ? GLN A 99 ASN A 109 1 ? 11 HELX_P HELX_P8 AA8 GLY A 115 ? LEU A 123 ? GLY A 110 LEU A 118 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NO3 201 ? 7 'binding site for residue NO3 A 201' AC2 Software A NO3 202 ? 10 'binding site for residue NO3 A 202' AC3 Software A NO3 203 ? 6 'binding site for residue NO3 A 203' AC4 Software A NO3 204 ? 4 'binding site for residue NO3 A 204' AC5 Software A NO3 205 ? 7 'binding site for residue NO3 A 205' AC6 Software A NO3 206 ? 5 'binding site for residue NO3 A 206' AC7 Software A NO3 207 ? 3 'binding site for residue NO3 A 207' AC8 Software A NO3 208 ? 6 'binding site for residue NO3 A 208' AC9 Software A EDO 209 ? 4 'binding site for residue EDO A 209' AD1 Software A EDO 210 ? 4 'binding site for residue EDO A 210' AD2 Software A EDO 211 ? 8 'binding site for residue EDO A 211' AD3 Software A EDO 212 ? 4 'binding site for residue EDO A 212' AD4 Software A EDO 213 ? 5 'binding site for residue EDO A 213' AD5 Software A EDO 214 ? 6 'binding site for residue EDO A 214' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 CYS A 21 ? CYS A 16 . ? 1_555 ? 2 AC1 7 PRO A 22 ? PRO A 17 . ? 1_555 ? 3 AC1 7 LEU A 23 ? LEU A 18 . ? 1_555 ? 4 AC1 7 PRO A 48 ? PRO A 43 . ? 6_545 ? 5 AC1 7 ARG A 49 ? ARG A 44 . ? 6_545 ? 6 AC1 7 LEU A 50 ? LEU A 45 . ? 6_545 ? 7 AC1 7 ASN A 59 ? ASN A 54 . ? 4_545 ? 8 AC2 10 LEU A 3 ? LEU A -2 . ? 1_555 ? 9 AC2 10 PRO A 2 ? PRO A -3 . ? 1_555 ? 10 AC2 10 GLY A 64 ? GLY A 59 . ? 4_545 ? 11 AC2 10 ASN A 65 ? ASN A 60 . ? 4_545 ? 12 AC2 10 LEU A 66 ? LEU A 61 . ? 4_545 ? 13 AC2 10 TRP A 110 ? TRP A 105 . ? 4_545 ? 14 AC2 10 NO3 D . ? NO3 A 203 . ? 4_545 ? 15 AC2 10 HOH P . ? HOH A 302 . ? 1_555 ? 16 AC2 10 HOH P . ? HOH A 306 . ? 4_545 ? 17 AC2 10 HOH P . ? HOH A 311 . ? 4_545 ? 18 AC3 6 ASN A 65 ? ASN A 60 . ? 1_555 ? 19 AC3 6 LEU A 66 ? LEU A 61 . ? 1_555 ? 20 AC3 6 ASN A 67 ? ASN A 62 . ? 1_555 ? 21 AC3 6 NO3 C . ? NO3 A 202 . ? 3_444 ? 22 AC3 6 HOH P . ? HOH A 311 . ? 1_555 ? 23 AC3 6 HOH P . ? HOH A 368 . ? 1_555 ? 24 AC4 4 ILE A 33 ? ILE A 28 . ? 1_555 ? 25 AC4 4 SER A 37 ? SER A 32 . ? 1_555 ? 26 AC4 4 HOH P . ? HOH A 340 . ? 1_555 ? 27 AC4 4 HOH P . ? HOH A 347 . ? 1_555 ? 28 AC5 7 THR A 7 ? THR A 2 . ? 1_555 ? 29 AC5 7 ILE A 9 ? ILE A 4 . ? 1_555 ? 30 AC5 7 ASN A 10 ? ASN A 5 . ? 1_555 ? 31 AC5 7 PHE A 11 ? PHE A 6 . ? 1_555 ? 32 AC5 7 SER A 12 ? SER A 7 . ? 1_555 ? 33 AC5 7 GLU A 99 ? GLU A 94 . ? 1_555 ? 34 AC5 7 HOH P . ? HOH A 304 . ? 1_555 ? 35 AC6 5 ASN A 8 ? ASN A 3 . ? 1_555 ? 36 AC6 5 ILE A 9 ? ILE A 4 . ? 1_555 ? 37 AC6 5 PHE A 11 ? PHE A 6 . ? 1_555 ? 38 AC6 5 TRP A 117 ? TRP A 112 . ? 1_555 ? 39 AC6 5 HOH P . ? HOH A 325 . ? 1_555 ? 40 AC7 3 GLU A 86 ? GLU A 81 . ? 1_555 ? 41 AC7 3 SER A 87 ? SER A 82 . ? 1_555 ? 42 AC7 3 ARG A 91 ? ARG A 86 . ? 1_555 ? 43 AC8 6 ARG A 45 ? ARG A 40 . ? 1_555 ? 44 AC8 6 SER A 62 ? SER A 57 . ? 7_555 ? 45 AC8 6 ASP A 63 ? ASP A 58 . ? 7_555 ? 46 AC8 6 LYS A 84 ? LYS A 79 . ? 1_555 ? 47 AC8 6 EDO L . ? EDO A 211 . ? 1_555 ? 48 AC8 6 HOH P . ? HOH A 328 . ? 1_555 ? 49 AC9 4 ARG A 49 ? ARG A 44 . ? 1_555 ? 50 AC9 4 GLY A 116 ? GLY A 111 . ? 6_445 ? 51 AC9 4 TRP A 117 ? TRP A 112 . ? 6_445 ? 52 AC9 4 VAL A 118 ? VAL A 113 . ? 6_445 ? 53 AD1 4 ASN A 67 ? ASN A 62 . ? 1_555 ? 54 AD1 4 TRP A 68 ? TRP A 63 . ? 1_555 ? 55 AD1 4 GLY A 69 ? GLY A 64 . ? 1_555 ? 56 AD1 4 HOH P . ? HOH A 364 . ? 1_555 ? 57 AD2 8 PHE A 44 ? PHE A 39 . ? 1_555 ? 58 AD2 8 ARG A 45 ? ARG A 40 . ? 1_555 ? 59 AD2 8 PHE A 47 ? PHE A 42 . ? 1_555 ? 60 AD2 8 ASN A 59 ? ASN A 54 . ? 7_555 ? 61 AD2 8 SER A 62 ? SER A 57 . ? 7_555 ? 62 AD2 8 LYS A 84 ? LYS A 79 . ? 1_555 ? 63 AD2 8 NO3 I . ? NO3 A 208 . ? 1_555 ? 64 AD2 8 HOH P . ? HOH A 328 . ? 1_555 ? 65 AD3 4 PHE A 47 ? PHE A 42 . ? 7_555 ? 66 AD3 4 PRO A 48 ? PRO A 43 . ? 7_555 ? 67 AD3 4 ILE A 56 ? ILE A 51 . ? 7_555 ? 68 AD3 4 HOH P . ? HOH A 350 . ? 1_555 ? 69 AD4 5 ARG A 25 ? ARG A 20 . ? 1_555 ? 70 AD4 5 HIS A 28 ? HIS A 23 . ? 1_555 ? 71 AD4 5 SER A 29 ? SER A 24 . ? 1_555 ? 72 AD4 5 LEU A 32 ? LEU A 27 . ? 1_555 ? 73 AD4 5 HOH P . ? HOH A 313 . ? 1_555 ? 74 AD5 6 GLU A 42 ? GLU A 37 . ? 7_555 ? 75 AD5 6 ARG A 45 ? ARG A 40 . ? 7_555 ? 76 AD5 6 ASN A 67 ? ASN A 62 . ? 1_555 ? 77 AD5 6 ILE A 73 ? ILE A 68 . ? 1_555 ? 78 AD5 6 HOH P . ? HOH A 339 . ? 7_555 ? 79 AD5 6 HOH P . ? HOH A 361 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 316 ? ? O A HOH 369 ? ? 2.01 2 1 O A HOH 340 ? ? O A HOH 385 ? ? 2.03 3 1 O A HOH 311 ? ? O A HOH 384 ? ? 2.14 4 1 O A HOH 309 ? ? O A HOH 374 ? ? 2.18 5 1 O A HOH 309 ? ? O A HOH 386 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O2 A EDO 212 ? ? 1_555 O2 A EDO 212 ? ? 7_555 1.74 2 1 CG2 A THR 38 ? ? 1_555 CG2 A THR 38 ? ? 7_555 1.91 3 1 O A HOH 306 ? ? 1_555 O A HOH 358 ? ? 3_444 2.05 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 13 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -110.12 _pdbx_validate_torsion.psi -108.82 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 346 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id P _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.5030 -25.8505 14.7089 0.5029 0.4680 0.5616 -0.0189 -0.0889 0.0591 2.9485 3.1739 0.5171 -2.9749 0.8599 -0.6391 0.1896 -0.0355 -0.7311 0.0974 0.3308 -0.1526 0.7409 -0.2471 -0.4961 'X-RAY DIFFRACTION' 2 ? refined 0.0482 -9.8640 9.9029 0.2570 0.2705 0.2529 0.0005 -0.0147 -0.0053 5.0235 2.1402 1.5310 -0.8974 0.6620 -0.6445 -0.2213 -0.4953 0.3857 0.1920 0.1499 -0.1010 -0.1329 -0.0124 0.0782 'X-RAY DIFFRACTION' 3 ? refined -0.3184 -18.7481 5.4437 0.2120 0.2022 0.2455 -0.0084 -0.0460 0.0456 5.1384 2.1696 3.5607 -1.1668 0.2024 0.1690 0.0482 -0.0905 -0.4148 0.0033 -0.0203 0.1177 0.2155 0.0167 -0.0245 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid -4 through 11 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 12 through 47 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 48 through 120 ) ; # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 406 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.56 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 121 ? A ARG 126 2 1 Y 1 A ASN 122 ? A ASN 127 3 1 Y 1 A TYR 123 ? A TYR 128 4 1 Y 1 A SER 124 ? A SER 129 5 1 Y 1 A SER 125 ? A SER 130 6 1 Y 1 A VAL 126 ? A VAL 131 7 1 Y 1 A THR 127 ? A THR 132 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 NO3 N N N N 260 NO3 O1 O N N 261 NO3 O2 O N N 262 NO3 O3 O N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 NO3 N O1 doub N N 246 NO3 N O2 sing N N 247 NO3 N O3 sing N N 248 PHE N CA sing N N 249 PHE N H sing N N 250 PHE N H2 sing N N 251 PHE CA C sing N N 252 PHE CA CB sing N N 253 PHE CA HA sing N N 254 PHE C O doub N N 255 PHE C OXT sing N N 256 PHE CB CG sing N N 257 PHE CB HB2 sing N N 258 PHE CB HB3 sing N N 259 PHE CG CD1 doub Y N 260 PHE CG CD2 sing Y N 261 PHE CD1 CE1 sing Y N 262 PHE CD1 HD1 sing N N 263 PHE CD2 CE2 doub Y N 264 PHE CD2 HD2 sing N N 265 PHE CE1 CZ doub Y N 266 PHE CE1 HE1 sing N N 267 PHE CE2 CZ sing Y N 268 PHE CE2 HE2 sing N N 269 PHE CZ HZ sing N N 270 PHE OXT HXT sing N N 271 PRO N CA sing N N 272 PRO N CD sing N N 273 PRO N H sing N N 274 PRO CA C sing N N 275 PRO CA CB sing N N 276 PRO CA HA sing N N 277 PRO C O doub N N 278 PRO C OXT sing N N 279 PRO CB CG sing N N 280 PRO CB HB2 sing N N 281 PRO CB HB3 sing N N 282 PRO CG CD sing N N 283 PRO CG HG2 sing N N 284 PRO CG HG3 sing N N 285 PRO CD HD2 sing N N 286 PRO CD HD3 sing N N 287 PRO OXT HXT sing N N 288 SER N CA sing N N 289 SER N H sing N N 290 SER N H2 sing N N 291 SER CA C sing N N 292 SER CA CB sing N N 293 SER CA HA sing N N 294 SER C O doub N N 295 SER C OXT sing N N 296 SER CB OG sing N N 297 SER CB HB2 sing N N 298 SER CB HB3 sing N N 299 SER OG HG sing N N 300 SER OXT HXT sing N N 301 THR N CA sing N N 302 THR N H sing N N 303 THR N H2 sing N N 304 THR CA C sing N N 305 THR CA CB sing N N 306 THR CA HA sing N N 307 THR C O doub N N 308 THR C OXT sing N N 309 THR CB OG1 sing N N 310 THR CB CG2 sing N N 311 THR CB HB sing N N 312 THR OG1 HG1 sing N N 313 THR CG2 HG21 sing N N 314 THR CG2 HG22 sing N N 315 THR CG2 HG23 sing N N 316 THR OXT HXT sing N N 317 TRP N CA sing N N 318 TRP N H sing N N 319 TRP N H2 sing N N 320 TRP CA C sing N N 321 TRP CA CB sing N N 322 TRP CA HA sing N N 323 TRP C O doub N N 324 TRP C OXT sing N N 325 TRP CB CG sing N N 326 TRP CB HB2 sing N N 327 TRP CB HB3 sing N N 328 TRP CG CD1 doub Y N 329 TRP CG CD2 sing Y N 330 TRP CD1 NE1 sing Y N 331 TRP CD1 HD1 sing N N 332 TRP CD2 CE2 doub Y N 333 TRP CD2 CE3 sing Y N 334 TRP NE1 CE2 sing Y N 335 TRP NE1 HE1 sing N N 336 TRP CE2 CZ2 sing Y N 337 TRP CE3 CZ3 doub Y N 338 TRP CE3 HE3 sing N N 339 TRP CZ2 CH2 doub Y N 340 TRP CZ2 HZ2 sing N N 341 TRP CZ3 CH2 sing Y N 342 TRP CZ3 HZ3 sing N N 343 TRP CH2 HH2 sing N N 344 TRP OXT HXT sing N N 345 TYR N CA sing N N 346 TYR N H sing N N 347 TYR N H2 sing N N 348 TYR CA C sing N N 349 TYR CA CB sing N N 350 TYR CA HA sing N N 351 TYR C O doub N N 352 TYR C OXT sing N N 353 TYR CB CG sing N N 354 TYR CB HB2 sing N N 355 TYR CB HB3 sing N N 356 TYR CG CD1 doub Y N 357 TYR CG CD2 sing Y N 358 TYR CD1 CE1 sing Y N 359 TYR CD1 HD1 sing N N 360 TYR CD2 CE2 doub Y N 361 TYR CD2 HD2 sing N N 362 TYR CE1 CZ doub Y N 363 TYR CE1 HE1 sing N N 364 TYR CE2 CZ sing Y N 365 TYR CE2 HE2 sing N N 366 TYR CZ OH sing N N 367 TYR OH HH sing N N 368 TYR OXT HXT sing N N 369 VAL N CA sing N N 370 VAL N H sing N N 371 VAL N H2 sing N N 372 VAL CA C sing N N 373 VAL CA CB sing N N 374 VAL CA HA sing N N 375 VAL C O doub N N 376 VAL C OXT sing N N 377 VAL CB CG1 sing N N 378 VAL CB CG2 sing N N 379 VAL CB HB sing N N 380 VAL CG1 HG11 sing N N 381 VAL CG1 HG12 sing N N 382 VAL CG1 HG13 sing N N 383 VAL CG2 HG21 sing N N 384 VAL CG2 HG22 sing N N 385 VAL CG2 HG23 sing N N 386 VAL OXT HXT sing N N 387 # _atom_sites.entry_id 5VMN _atom_sites.fract_transf_matrix[1][1] 0.014699 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014699 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011652 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_