HEADER VIRAL PROTEIN 27-APR-17 5VMN TITLE CRYSTAL STRUCTURE OF GROUPER IRIDOVIRUS GIV66 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-127; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GROUPER IRIDOVIRUS; SOURCE 3 ORGANISM_TAXID: 127569; SOURCE 4 GENE: GIV66; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P3 KEYWDS APOPTOSIS, BCL-2, IRIDOVIRUS, GROUPER, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BANJARA,M.KVANSAKUL REVDAT 4 13-MAR-24 5VMN 1 REMARK REVDAT 3 25-APR-18 5VMN 1 JRNL REVDAT 2 14-MAR-18 5VMN 1 JRNL REVDAT 1 07-MAR-18 5VMN 0 JRNL AUTH S.BANJARA,J.MAO,T.M.RYAN,S.CARIA,M.KVANSAKUL JRNL TITL GROUPER IRIDOVIRUS GIV66 IS A BCL-2 PROTEIN THAT INHIBITS JRNL TITL 2 APOPTOSIS BY EXCLUSIVELY SEQUESTERING BIM. JRNL REF J. BIOL. CHEM. V. 293 5464 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29483196 JRNL DOI 10.1074/JBC.RA117.000591 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9774 - 3.4316 0.99 2786 149 0.1815 0.2175 REMARK 3 2 3.4316 - 2.7239 1.00 2686 124 0.1770 0.2035 REMARK 3 3 2.7239 - 2.3796 1.00 2646 132 0.1602 0.1841 REMARK 3 4 2.3796 - 2.1621 1.00 2614 145 0.1615 0.1646 REMARK 3 5 2.1621 - 2.0071 1.00 2598 115 0.1654 0.2193 REMARK 3 6 2.0071 - 1.8888 1.00 2593 137 0.1995 0.2498 REMARK 3 7 1.8888 - 1.7942 1.00 2595 127 0.2309 0.2813 REMARK 3 8 1.7942 - 1.7161 1.00 2554 154 0.2882 0.3051 REMARK 3 9 1.7161 - 1.6500 1.00 2589 127 0.3256 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1052 REMARK 3 ANGLE : 1.017 1403 REMARK 3 CHIRALITY : 0.051 156 REMARK 3 PLANARITY : 0.007 183 REMARK 3 DIHEDRAL : 16.821 611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5030 -25.8505 14.7089 REMARK 3 T TENSOR REMARK 3 T11: 0.5029 T22: 0.4680 REMARK 3 T33: 0.5616 T12: -0.0189 REMARK 3 T13: -0.0889 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.9485 L22: 3.1739 REMARK 3 L33: 0.5171 L12: -2.9749 REMARK 3 L13: 0.8599 L23: -0.6391 REMARK 3 S TENSOR REMARK 3 S11: 0.1896 S12: -0.0355 S13: -0.7311 REMARK 3 S21: 0.0974 S22: 0.3308 S23: -0.1526 REMARK 3 S31: 0.7409 S32: -0.2471 S33: -0.4961 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0482 -9.8640 9.9029 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.2705 REMARK 3 T33: 0.2529 T12: 0.0005 REMARK 3 T13: -0.0147 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.0235 L22: 2.1402 REMARK 3 L33: 1.5310 L12: -0.8974 REMARK 3 L13: 0.6620 L23: -0.6445 REMARK 3 S TENSOR REMARK 3 S11: -0.2213 S12: -0.4953 S13: 0.3857 REMARK 3 S21: 0.1920 S22: 0.1499 S23: -0.1010 REMARK 3 S31: -0.1329 S32: -0.0124 S33: 0.0782 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3184 -18.7481 5.4437 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2022 REMARK 3 T33: 0.2455 T12: -0.0084 REMARK 3 T13: -0.0460 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 5.1384 L22: 2.1696 REMARK 3 L33: 3.5607 L12: -1.1668 REMARK 3 L13: 0.2024 L23: 0.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.0905 S13: -0.4148 REMARK 3 S21: 0.0033 S22: -0.0203 S23: 0.1177 REMARK 3 S31: 0.2155 S32: 0.0167 S33: -0.0245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 2.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0 M SODIUM NITRATE WITH 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.91200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.01650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.01650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.36800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.01650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.01650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.45600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.01650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.01650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.36800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.01650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.01650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.45600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.91200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 346 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 121 REMARK 465 ASN A 122 REMARK 465 TYR A 123 REMARK 465 SER A 124 REMARK 465 SER A 125 REMARK 465 VAL A 126 REMARK 465 THR A 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 316 O HOH A 369 2.01 REMARK 500 O HOH A 340 O HOH A 385 2.03 REMARK 500 O HOH A 311 O HOH A 384 2.14 REMARK 500 O HOH A 309 O HOH A 374 2.18 REMARK 500 O HOH A 309 O HOH A 386 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 EDO A 212 O2 EDO A 212 7555 1.74 REMARK 500 CG2 THR A 38 CG2 THR A 38 7555 1.91 REMARK 500 O HOH A 306 O HOH A 358 3444 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 -108.82 -110.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 406 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VMO RELATED DB: PDB DBREF 5VMN A 1 127 UNP Q5GAF0 Q5GAF0_9VIRU 1 127 SEQADV 5VMN GLY A -4 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMN PRO A -3 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMN LEU A -2 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMN GLY A -1 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMN SER A 0 UNP Q5GAF0 EXPRESSION TAG SEQRES 1 A 132 GLY PRO LEU GLY SER MET THR ASN ILE ASN PHE SER ALA SEQRES 2 A 132 LEU LEU ARG GLY GLU ARG MET CYS PRO LEU THR ARG GLU SEQRES 3 A 132 ILE HIS SER GLN MET LEU ILE VAL THR LYS SER TYR SER SEQRES 4 A 132 LEU VAL GLU THR PHE ARG ALA PHE PRO ARG LEU PRO ASN SEQRES 5 A 132 ILE LEU GLU ILE GLY ASN ASN ILE VAL SER ASP GLY ASN SEQRES 6 A 132 LEU ASN TRP GLY ARG ILE LEU ILE LEU LEU GLY ILE SER SEQRES 7 A 132 GLN LEU TYR PHE THR LYS SER GLU SER GLU SER GLU ARG SEQRES 8 A 132 THR GLN ILE THR GLU GLN LEU GLU ARG PHE PHE ARG GLN SEQRES 9 A 132 ASP ALA ILE SER ASN TRP ILE ALA SER ASN GLY GLY TRP SEQRES 10 A 132 VAL THR CYS ALA SER LEU ASP LEU ARG ASN TYR SER SER SEQRES 11 A 132 VAL THR HET NO3 A 201 4 HET NO3 A 202 4 HET NO3 A 203 4 HET NO3 A 204 4 HET NO3 A 205 4 HET NO3 A 206 4 HET NO3 A 207 4 HET NO3 A 208 4 HET EDO A 209 4 HET EDO A 210 4 HET EDO A 211 4 HET EDO A 212 4 HET EDO A 213 4 HET EDO A 214 4 HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NO3 8(N O3 1-) FORMUL 10 EDO 6(C2 H6 O2) FORMUL 16 HOH *106(H2 O) HELIX 1 AA1 ASN A 5 GLY A 12 1 8 HELIX 2 AA2 CYS A 16 TYR A 33 1 18 HELIX 3 AA3 SER A 34 ARG A 40 1 7 HELIX 4 AA4 ASN A 47 VAL A 56 1 10 HELIX 5 AA5 ASN A 62 SER A 80 1 19 HELIX 6 AA6 SER A 82 GLN A 99 1 18 HELIX 7 AA7 GLN A 99 ASN A 109 1 11 HELIX 8 AA8 GLY A 110 LEU A 118 1 9 SITE 1 AC1 7 CYS A 16 PRO A 17 LEU A 18 PRO A 43 SITE 2 AC1 7 ARG A 44 LEU A 45 ASN A 54 SITE 1 AC2 10 LEU A -2 PRO A -3 GLY A 59 ASN A 60 SITE 2 AC2 10 LEU A 61 TRP A 105 NO3 A 203 HOH A 302 SITE 3 AC2 10 HOH A 306 HOH A 311 SITE 1 AC3 6 ASN A 60 LEU A 61 ASN A 62 NO3 A 202 SITE 2 AC3 6 HOH A 311 HOH A 368 SITE 1 AC4 4 ILE A 28 SER A 32 HOH A 340 HOH A 347 SITE 1 AC5 7 THR A 2 ILE A 4 ASN A 5 PHE A 6 SITE 2 AC5 7 SER A 7 GLU A 94 HOH A 304 SITE 1 AC6 5 ASN A 3 ILE A 4 PHE A 6 TRP A 112 SITE 2 AC6 5 HOH A 325 SITE 1 AC7 3 GLU A 81 SER A 82 ARG A 86 SITE 1 AC8 6 ARG A 40 SER A 57 ASP A 58 LYS A 79 SITE 2 AC8 6 EDO A 211 HOH A 328 SITE 1 AC9 4 ARG A 44 GLY A 111 TRP A 112 VAL A 113 SITE 1 AD1 4 ASN A 62 TRP A 63 GLY A 64 HOH A 364 SITE 1 AD2 8 PHE A 39 ARG A 40 PHE A 42 ASN A 54 SITE 2 AD2 8 SER A 57 LYS A 79 NO3 A 208 HOH A 328 SITE 1 AD3 4 PHE A 42 PRO A 43 ILE A 51 HOH A 350 SITE 1 AD4 5 ARG A 20 HIS A 23 SER A 24 LEU A 27 SITE 2 AD4 5 HOH A 313 SITE 1 AD5 6 GLU A 37 ARG A 40 ASN A 62 ILE A 68 SITE 2 AD5 6 HOH A 339 HOH A 361 CRYST1 68.033 68.033 85.824 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011652 0.00000