HEADER VIRAL PROTEIN/APOPTOSIS 28-APR-17 5VMO TITLE CRYSTAL STRUCTURE OF GROUPER IRIDOVIRUS GIV66:BIM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-127; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BCL-2 INTERACTING MEDIATOR OF CELL DEATH; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 117-142; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GROUPER IRIDOVIRUS; SOURCE 3 ORGANISM_TAXID: 127569; SOURCE 4 GENE: GIV66; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P3; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 12 ORGANISM_COMMON: ZEBRAFISH; SOURCE 13 ORGANISM_TAXID: 7955 KEYWDS APOPTOSIS, BCL-2, IRIDOVIRUS, GROUPER, VIRAL PROTEIN-APOPTOSIS KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BANJARA,M.KVANSAKUL REVDAT 4 04-OCT-23 5VMO 1 REMARK REVDAT 3 25-APR-18 5VMO 1 JRNL REVDAT 2 14-MAR-18 5VMO 1 JRNL REVDAT 1 07-MAR-18 5VMO 0 JRNL AUTH S.BANJARA,J.MAO,T.M.RYAN,S.CARIA,M.KVANSAKUL JRNL TITL GROUPER IRIDOVIRUS GIV66 IS A BCL-2 PROTEIN THAT INHIBITS JRNL TITL 2 APOPTOSIS BY EXCLUSIVELY SEQUESTERING BIM. JRNL REF J. BIOL. CHEM. V. 293 5464 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29483196 JRNL DOI 10.1074/JBC.RA117.000591 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9080 - 3.2516 1.00 2533 130 0.1648 0.2036 REMARK 3 2 3.2516 - 2.5811 1.00 2524 108 0.1571 0.1901 REMARK 3 3 2.5811 - 2.2549 1.00 2480 139 0.1348 0.1885 REMARK 3 4 2.2549 - 2.0487 1.00 2466 146 0.1324 0.1771 REMARK 3 5 2.0487 - 1.9019 1.00 2440 152 0.1611 0.2069 REMARK 3 6 1.9019 - 1.7898 1.00 2466 138 0.2049 0.2328 REMARK 3 7 1.7898 - 1.7001 1.00 2481 114 0.2307 0.2498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1186 REMARK 3 ANGLE : 1.623 1587 REMARK 3 CHIRALITY : 0.083 177 REMARK 3 PLANARITY : 0.011 200 REMARK 3 DIHEDRAL : 17.928 718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8377 -5.2382 -1.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.1498 REMARK 3 T33: 0.1097 T12: -0.0189 REMARK 3 T13: 0.0338 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.5879 L22: 7.5486 REMARK 3 L33: 5.5541 L12: -2.4732 REMARK 3 L13: -1.3565 L23: -1.4629 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.4785 S13: 0.1549 REMARK 3 S21: -0.9076 S22: 0.0196 S23: -0.1617 REMARK 3 S31: -0.4505 S32: -0.2685 S33: -0.0905 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7871 -3.4377 4.2978 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.2722 REMARK 3 T33: 0.2679 T12: 0.0605 REMARK 3 T13: 0.0654 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.5967 L22: 5.5800 REMARK 3 L33: 4.3776 L12: 1.2278 REMARK 3 L13: 0.9498 L23: 4.1383 REMARK 3 S TENSOR REMARK 3 S11: -0.4622 S12: -0.3586 S13: -0.4475 REMARK 3 S21: 0.1536 S22: 0.3958 S23: -0.6944 REMARK 3 S31: 0.7348 S32: 0.4105 S33: 0.1184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6889 10.8501 12.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1548 REMARK 3 T33: 0.1022 T12: -0.0108 REMARK 3 T13: -0.0357 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.9500 L22: 1.9734 REMARK 3 L33: 1.9890 L12: 0.2611 REMARK 3 L13: -1.0198 L23: 0.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: -0.3657 S13: -0.0623 REMARK 3 S21: 0.3687 S22: -0.1402 S23: -0.1324 REMARK 3 S31: -0.1493 S32: 0.1414 S33: -0.0760 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7249 4.4092 7.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.0912 REMARK 3 T33: 0.1159 T12: 0.0131 REMARK 3 T13: 0.0001 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 5.2960 L22: 3.1036 REMARK 3 L33: 2.2605 L12: 2.6292 REMARK 3 L13: -1.8019 L23: -1.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.2580 S13: -0.3030 REMARK 3 S21: 0.0098 S22: -0.0647 S23: -0.1732 REMARK 3 S31: 0.1620 S32: 0.0945 S33: 0.1003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8271 3.7811 4.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.0976 REMARK 3 T33: 0.1492 T12: 0.0201 REMARK 3 T13: 0.0071 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 5.4948 L22: 8.5213 REMARK 3 L33: 4.0741 L12: 3.3700 REMARK 3 L13: -1.4377 L23: -5.2400 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0770 S13: -0.1771 REMARK 3 S21: 0.1868 S22: 0.1961 S23: 0.3031 REMARK 3 S31: -0.0093 S32: -0.4131 S33: -0.1489 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6759 9.1189 -5.0574 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1463 REMARK 3 T33: 0.1229 T12: -0.0112 REMARK 3 T13: 0.0239 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 5.1249 L22: 5.7981 REMARK 3 L33: 3.9573 L12: -0.3121 REMARK 3 L13: -2.9152 L23: 1.9565 REMARK 3 S TENSOR REMARK 3 S11: -0.1805 S12: -0.2441 S13: -0.2192 REMARK 3 S21: 0.2191 S22: 0.0994 S23: -0.3257 REMARK 3 S31: 0.2949 S32: 0.2147 S33: -0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7223 13.1007 12.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2052 REMARK 3 T33: 0.1595 T12: -0.0149 REMARK 3 T13: -0.0713 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.3760 L22: 5.5022 REMARK 3 L33: 4.8105 L12: -2.1817 REMARK 3 L13: -1.5488 L23: 0.5395 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.5632 S13: 0.3661 REMARK 3 S21: 0.3329 S22: 0.0045 S23: -0.3957 REMARK 3 S31: -0.0451 S32: 0.6009 S33: 0.0362 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 20 % PEG 8K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.70667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.85333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.28000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.42667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 119 REMARK 465 LEU A 120 REMARK 465 ARG A 121 REMARK 465 ASN A 122 REMARK 465 TYR A 123 REMARK 465 SER A 124 REMARK 465 SER A 125 REMARK 465 VAL A 126 REMARK 465 THR A 127 REMARK 465 GLU B 141 REMARK 465 ALA B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 95 HO1 EDO A 205 1.33 REMARK 500 OH7 1PE A 201 O HOH A 301 1.78 REMARK 500 O HOH A 393 O HOH A 399 1.87 REMARK 500 O HOH A 330 O HOH A 366 2.09 REMARK 500 O HOH A 356 O HOH A 387 2.11 REMARK 500 OE2 GLU B 134 O HOH B 301 2.18 REMARK 500 O HOH A 389 O HOH A 390 2.19 REMARK 500 O HOH A 349 O HOH A 354 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 26 CG - SD - CE ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 400 DISTANCE = 7.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VMN RELATED DB: PDB DBREF 5VMO A 1 127 UNP Q5GAF0 Q5GAF0_9VIRU 1 127 DBREF 5VMO B 117 142 UNP B2KKY9 B2KKY9_DANRE 117 142 SEQADV 5VMO GLY A -4 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMO PRO A -3 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMO LEU A -2 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMO GLY A -1 UNP Q5GAF0 EXPRESSION TAG SEQADV 5VMO SER A 0 UNP Q5GAF0 EXPRESSION TAG SEQRES 1 A 132 GLY PRO LEU GLY SER MET THR ASN ILE ASN PHE SER ALA SEQRES 2 A 132 LEU LEU ARG GLY GLU ARG MET CYS PRO LEU THR ARG GLU SEQRES 3 A 132 ILE HIS SER GLN MET LEU ILE VAL THR LYS SER TYR SER SEQRES 4 A 132 LEU VAL GLU THR PHE ARG ALA PHE PRO ARG LEU PRO ASN SEQRES 5 A 132 ILE LEU GLU ILE GLY ASN ASN ILE VAL SER ASP GLY ASN SEQRES 6 A 132 LEU ASN TRP GLY ARG ILE LEU ILE LEU LEU GLY ILE SER SEQRES 7 A 132 GLN LEU TYR PHE THR LYS SER GLU SER GLU SER GLU ARG SEQRES 8 A 132 THR GLN ILE THR GLU GLN LEU GLU ARG PHE PHE ARG GLN SEQRES 9 A 132 ASP ALA ILE SER ASN TRP ILE ALA SER ASN GLY GLY TRP SEQRES 10 A 132 VAL THR CYS ALA SER LEU ASP LEU ARG ASN TYR SER SER SEQRES 11 A 132 VAL THR SEQRES 1 B 26 ALA LEU PRO PRO GLU MET VAL VAL ALA ARG GLU LEU ARG SEQRES 2 B 26 ARG ILE GLY ASP GLU PHE ASN ARG LEU TYR CYS GLU ALA HET 1PE A 201 38 HET EDO A 202 10 HET EDO A 203 10 HET EDO A 204 10 HET EDO A 205 10 HET EDO A 206 10 HET EDO A 207 10 HET EDO B 201 10 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 1PE C10 H22 O6 FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 HOH *119(H2 O) HELIX 1 AA1 ASN A 5 GLY A 12 1 8 HELIX 2 AA2 CYS A 16 THR A 30 1 15 HELIX 3 AA3 SER A 32 PHE A 42 1 11 HELIX 4 AA4 ASN A 47 VAL A 56 1 10 HELIX 5 AA5 SER A 57 GLY A 59 5 3 HELIX 6 AA6 ASN A 62 LYS A 79 1 18 HELIX 7 AA7 SER A 82 GLN A 99 1 18 HELIX 8 AA8 GLN A 99 ASN A 109 1 11 HELIX 9 AA9 GLY A 110 SER A 117 1 8 HELIX 10 AB1 PRO B 119 CYS B 140 1 22 SITE 1 AC1 6 GLY A 59 ASN A 60 LEU A 61 TRP A 105 SITE 2 AC1 6 HOH A 301 ARG B 126 SITE 1 AC2 3 ILE A 4 HOH A 313 HOH A 319 SITE 1 AC3 6 SER A 7 ARG A 11 GLU A 83 ARG A 86 SITE 2 AC3 6 THR A 87 THR A 90 SITE 1 AC4 6 ARG A 86 THR A 87 GLU A 91 HOH A 305 SITE 2 AC4 6 HOH A 329 HOH A 374 SITE 1 AC5 8 LEU A 10 ARG A 11 GLN A 74 PHE A 77 SITE 2 AC5 8 ARG A 95 GLN A 99 HOH A 317 HOH A 335 SITE 1 AC6 2 HOH A 331 HOH A 337 SITE 1 AC7 7 ASN A 47 LYS A 79 SER A 80 GLN A 88 SITE 2 AC7 7 GLN A 92 HOH A 320 HOH A 349 SITE 1 AC8 4 ARG B 126 ASN B 136 CYS B 140 HOH B 302 CRYST1 71.800 71.800 56.560 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013928 0.008041 0.000000 0.00000 SCALE2 0.000000 0.016082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017680 0.00000