HEADER TRANSFERASE 03-MAY-17 5VON TITLE METHIONINE SYNTHASE FOLATE-BINDING DOMAIN FROM THERMUS THERMOPHILUS TITLE 2 HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-METHYLTETRAHYDROFOLATE HOMOCYSTEINE S-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FOLATE-BINDING DOMAIN RESIDUES 353-648; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: TTHA0618; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, PTERIN BINDING, B12 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMADA,M.KOUTMOS REVDAT 3 04-OCT-23 5VON 1 REMARK REVDAT 2 16-MAY-18 5VON 1 JRNL REVDAT 1 17-JAN-18 5VON 0 JRNL AUTH K.YAMADA,M.KOUTMOS JRNL TITL THE FOLATE-BINDING MODULE OF THERMUS THERMOPHILUS JRNL TITL 2 COBALAMIN-DEPENDENT METHIONINE SYNTHASE DISPLAYS A DISTINCT JRNL TITL 3 VARIATION OF THE CLASSICAL TIM BARREL: A TIM BARREL WITH A JRNL TITL 4 `TWIST'. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 41 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29372898 JRNL DOI 10.1107/S2059798317018290 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.27000 REMARK 3 B22 (A**2) : 2.27000 REMARK 3 B33 (A**2) : -4.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2260 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2272 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.297 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5173 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;29.645 ;22.718 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;12.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 495 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 2.350 ; 4.768 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1126 ; 2.351 ; 4.766 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1407 ; 3.560 ; 7.146 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1408 ; 3.558 ; 7.149 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 2.793 ; 5.241 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1134 ; 2.792 ; 5.241 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1647 ; 4.578 ; 7.704 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2433 ; 6.286 ;56.910 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2426 ; 6.286 ;56.885 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5VON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 53.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 14.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : 0.47100 REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BOF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.55650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.59300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.83475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.59300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.27825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.59300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.59300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.83475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.59300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.59300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.27825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.55650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3142 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 353 REMARK 465 ALA A 354 REMARK 465 SER A 355 REMARK 465 LEU A 356 REMARK 465 TYR A 357 REMARK 465 GLN A 358 REMARK 465 ALA A 359 REMARK 465 VAL A 360 REMARK 465 SER A 361 REMARK 465 LEU A 362 REMARK 465 LYS A 363 REMARK 465 GLN A 364 REMARK 465 GLU A 365 REMARK 465 ALA A 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3146 O HOH A 3146 7555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 633 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 GLU A 633 O - C - N ANGL. DEV. = 17.1 DEGREES REMARK 500 GLY A 634 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 375 56.40 -90.76 REMARK 500 THR A 417 102.64 -1.73 REMARK 500 ASP A 495 -158.55 -131.11 REMARK 500 LEU A 533 131.05 86.68 REMARK 500 GLN A 539 -0.79 77.50 REMARK 500 GLU A 646 -43.14 73.64 REMARK 500 ALA A 647 40.05 -102.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VOO RELATED DB: PDB REMARK 900 RELATED ID: 5VOP RELATED DB: PDB DBREF 5VON A 353 648 UNP Q5SKM5 Q5SKM5_THET8 353 648 SEQRES 1 A 296 VAL ALA SER LEU TYR GLN ALA VAL SER LEU LYS GLN GLU SEQRES 2 A 296 ALA SER LEU PHE LEU VAL GLY GLU ARG LEU ASN ALA THR SEQRES 3 A 296 GLY SER LYS ARG PHE ARG GLU MET LEU PHE ALA ARG ASP SEQRES 4 A 296 LEU GLU GLY ILE LEU ALA LEU ALA ARG GLU GLN VAL GLU SEQRES 5 A 296 GLU GLY ALA HIS ALA LEU ASP LEU SER VAL ALA TRP THR SEQRES 6 A 296 GLY ARG ASP GLU LEU GLU ASP LEU ARG TRP LEU LEU PRO SEQRES 7 A 296 HIS LEU ALA THR ALA LEU THR VAL PRO VAL MET VAL ASP SEQRES 8 A 296 SER THR SER PRO GLU ALA MET GLU LEU ALA LEU LYS TYR SEQRES 9 A 296 LEU PRO GLY ARG VAL LEU LEU ASN SER ALA ASN LEU GLU SEQRES 10 A 296 ASP GLY LEU GLU ARG PHE ASP ARG VAL ALA SER LEU ALA SEQRES 11 A 296 LYS ALA HIS GLY ALA ALA LEU VAL VAL LEU ALA ILE ASP SEQRES 12 A 296 GLU LYS GLY MET ALA LYS THR ARG GLU GLU LYS VAL ARG SEQRES 13 A 296 VAL ALA LEU ARG MET TYR GLU ARG LEU THR GLU HIS HIS SEQRES 14 A 296 GLY LEU ARG PRO GLU ASP LEU LEU PHE ASP LEU LEU THR SEQRES 15 A 296 PHE PRO ILE THR GLN GLY ASP GLU GLU SER ARG PRO LEU SEQRES 16 A 296 ALA LYS GLU THR LEU LEU ALA MET GLU GLU LEU ARG GLU SEQRES 17 A 296 ARG LEU PRO GLY VAL GLY PHE VAL LEU GLY VAL SER ASN SEQRES 18 A 296 VAL SER PHE GLY LEU LYS PRO ARG ALA ARG ARG VAL LEU SEQRES 19 A 296 ASN SER VAL PHE LEU ASP GLU ALA ARG LYS ARG GLY LEU SEQRES 20 A 296 THR ALA ALA ILE VAL ASP ALA GLY LYS ILE LEU PRO ILE SEQRES 21 A 296 SER GLN ILE PRO GLU GLU ALA TYR ALA LEU ALA LEU ASP SEQRES 22 A 296 LEU ILE TYR ASP ARG ARG LYS GLU GLY PHE ASP PRO LEU SEQRES 23 A 296 LEU ALA PHE MET ALA TYR PHE GLU ALA HIS HET GOL A3001 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *67(H2 O) HELIX 1 AA1 SER A 380 ARG A 390 1 11 HELIX 2 AA2 ASP A 391 GLU A 405 1 15 HELIX 3 AA3 ASP A 420 LEU A 436 1 17 HELIX 4 AA4 SER A 446 LEU A 457 1 12 HELIX 5 AA5 GLY A 471 GLY A 486 1 16 HELIX 6 AA6 THR A 502 HIS A 520 1 19 HELIX 7 AA7 ARG A 524 GLU A 526 5 3 HELIX 8 AA8 PRO A 546 LEU A 562 1 17 HELIX 9 AA9 SER A 572 PHE A 576 5 5 HELIX 10 AB1 LYS A 579 ARG A 597 1 19 HELIX 11 AB2 ASP A 605 ILE A 609 5 5 HELIX 12 AB3 PRO A 611 ILE A 615 5 5 HELIX 13 AB4 PRO A 616 TYR A 628 1 13 HELIX 14 AB5 ASP A 636 PHE A 645 1 10 SHEET 1 AA1 9 PHE A 369 ASN A 376 0 SHEET 2 AA1 9 ALA A 409 SER A 413 1 O ASP A 411 N GLY A 372 SHEET 3 AA1 9 VAL A 440 ASP A 443 1 O ASP A 443 N LEU A 412 SHEET 4 AA1 9 VAL A 461 ALA A 466 1 O ASN A 464 N VAL A 442 SHEET 5 AA1 9 ALA A 488 LEU A 492 1 O VAL A 490 N LEU A 463 SHEET 6 AA1 9 LEU A 528 ASP A 531 1 O ASP A 531 N VAL A 491 SHEET 7 AA1 9 GLY A 566 GLY A 570 1 O GLY A 566 N PHE A 530 SHEET 8 AA1 9 ALA A 601 VAL A 604 1 O ILE A 603 N LEU A 569 SHEET 9 AA1 9 PHE A 369 ASN A 376 1 N VAL A 371 O ALA A 602 SHEET 1 AA2 2 ILE A 494 ASP A 495 0 SHEET 2 AA2 2 GLY A 498 MET A 499 -1 O GLY A 498 N ASP A 495 CISPEP 1 ASN A 464 SER A 465 0 4.52 SITE 1 AC1 6 GLU A 515 ARG A 516 GLU A 519 HIS A 520 SITE 2 AC1 6 HOH A3130 HOH A3146 CRYST1 55.186 55.186 197.113 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005073 0.00000