HEADER HYDROLASE/HYDROLASE INHIBITOR 05-MAY-17 5VPM TITLE CRYSTAL STRUCTURE OF HUMAN RENIN IN COMPLEX WITH A TITLE 2 BIPHENYLPIPDERIDINYLCARBINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 70-406; COMPND 5 SYNONYM: ANGIOTENSINOGENASE; COMPND 6 EC: 3.4.23.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK-F KEYWDS RENIN INHIBITOR, BIPHENYL, HYPERTENSION, CYP 3A4, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CONCHA,B.ZHAO REVDAT 3 29-JUL-20 5VPM 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 25-OCT-17 5VPM 1 JRNL REVDAT 1 18-OCT-17 5VPM 0 JRNL AUTH B.G.LAWHORN,T.TRAN,V.S.HONG,L.A.MORGAN,B.T.LE,M.R.HARPEL, JRNL AUTH 2 L.JOLIVETTE,E.DIAZ,B.SCHWARTZ,J.W.GROSS,T.TOMASZEK,S.SEMUS, JRNL AUTH 3 N.CONCHA,A.SMALLWOOD,D.A.HOLT,L.S.KALLANDER JRNL TITL DISCOVERY OF RENIN INHIBITORS CONTAINING A SIMPLE ASPARTATE JRNL TITL 2 BINDING MOIETY THAT IMPARTS REDUCED P450 INHIBITION. JRNL REF BIOORG. MED. CHEM. LETT. V. 27 4838 2017 JRNL REFN ESSN 1464-3405 JRNL PMID 28985999 JRNL DOI 10.1016/J.BMCL.2017.09.046 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 15066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 2.94000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.482 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.376 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5327 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4731 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7242 ; 1.335 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10987 ; 0.904 ; 2.993 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 7.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;35.695 ;24.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 806 ;14.875 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 815 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5903 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1095 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2672 ; 1.215 ; 4.747 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2671 ; 1.215 ; 4.746 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3333 ; 2.128 ; 7.115 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3334 ; 2.127 ; 7.115 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2655 ; 1.084 ; 4.821 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2648 ; 1.076 ; 4.808 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3898 ; 1.902 ; 7.183 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5611 ; 3.508 ;54.364 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5611 ; 3.418 ;54.366 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 337 5 REMARK 3 1 B 1 B 337 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1957 ; 0.21 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 2822 ; 0.68 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1957 ; 4.34 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2822 ; 4.54 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4791 -3.9373 -9.4436 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.0538 REMARK 3 T33: 0.1163 T12: -0.0059 REMARK 3 T13: -0.0208 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.7734 L22: 0.3762 REMARK 3 L33: 1.6860 L12: -0.1278 REMARK 3 L13: 0.6203 L23: 0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.0953 S13: 0.1163 REMARK 3 S21: -0.0628 S22: 0.0828 S23: 0.0471 REMARK 3 S31: 0.0066 S32: 0.0893 S33: -0.0713 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 337 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2617 -33.3716 -27.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.1133 REMARK 3 T33: 0.0747 T12: -0.0119 REMARK 3 T13: 0.0294 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.9469 L22: 0.7213 REMARK 3 L33: 0.6272 L12: -0.3240 REMARK 3 L13: -0.4105 L23: -0.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: -0.2111 S13: -0.0004 REMARK 3 S21: -0.1088 S22: 0.1579 S23: -0.0106 REMARK 3 S31: -0.0081 S32: 0.0759 S33: -0.0777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-22% PEG3350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M TRIS-HCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.68900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.92350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.68900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.92350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 GLN A 167 REMARK 465 SER B 166 REMARK 465 GLN B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 SER A 209 OG REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 PHE A 250 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 250 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 LYS B 290 CG CD CE NZ REMARK 470 LYS B 291 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -16.92 81.65 REMARK 500 MET A 13 50.93 34.84 REMARK 500 ASP A 14 18.22 58.96 REMARK 500 LYS A 70 88.83 -150.28 REMARK 500 ASN A 72 -62.70 -122.29 REMARK 500 THR A 82 46.38 -99.00 REMARK 500 GLN A 172 108.77 -163.93 REMARK 500 ASN B 72 -64.10 -144.52 REMARK 500 GLU B 164 67.79 61.09 REMARK 500 ARG B 248 -162.45 -103.27 REMARK 500 ASP B 251 141.92 -177.27 REMARK 500 ALA B 296 41.98 -90.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VPM A 1 337 UNP P00797 RENI_HUMAN 70 406 DBREF 5VPM B 1 337 UNP P00797 RENI_HUMAN 70 406 SEQRES 1 A 337 GLY ASN THR THR SER SER VAL ILE LEU THR ASN TYR MET SEQRES 2 A 337 ASP THR GLN TYR TYR GLY GLU ILE GLY ILE GLY THR PRO SEQRES 3 A 337 PRO GLN THR PHE LYS VAL VAL PHE ASP THR GLY SER SER SEQRES 4 A 337 ASN VAL TRP VAL PRO SER SER LYS CYS SER ARG LEU TYR SEQRES 5 A 337 THR ALA CYS VAL TYR HIS LYS LEU PHE ASP ALA SER ASP SEQRES 6 A 337 SER SER SER TYR LYS HIS ASN GLY THR GLU LEU THR LEU SEQRES 7 A 337 ARG TYR SER THR GLY THR VAL SER GLY PHE LEU SER GLN SEQRES 8 A 337 ASP ILE ILE THR VAL GLY GLY ILE THR VAL THR GLN MET SEQRES 9 A 337 PHE GLY GLU VAL THR GLU MET PRO ALA LEU PRO PHE MET SEQRES 10 A 337 LEU ALA GLU PHE ASP GLY VAL VAL GLY MET GLY PHE ILE SEQRES 11 A 337 GLU GLN ALA ILE GLY ARG VAL THR PRO ILE PHE ASP ASN SEQRES 12 A 337 ILE ILE SER GLN GLY VAL LEU LYS GLU ASP VAL PHE SER SEQRES 13 A 337 PHE TYR TYR ASN ARG ASP SER GLU ASN SER GLN SER LEU SEQRES 14 A 337 GLY GLY GLN ILE VAL LEU GLY GLY SER ASP PRO GLN HIS SEQRES 15 A 337 TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU ILE LYS THR SEQRES 16 A 337 GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SER VAL GLY SEQRES 17 A 337 SER SER THR LEU LEU CYS GLU ASP GLY CYS LEU ALA LEU SEQRES 18 A 337 VAL ASP THR GLY ALA SER TYR ILE SER GLY SER THR SER SEQRES 19 A 337 SER ILE GLU LYS LEU MET GLU ALA LEU GLY ALA LYS LYS SEQRES 20 A 337 ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN GLU GLY PRO SEQRES 21 A 337 THR LEU PRO ASP ILE SER PHE HIS LEU GLY GLY LYS GLU SEQRES 22 A 337 TYR THR LEU THR SER ALA ASP TYR VAL PHE GLN GLU SER SEQRES 23 A 337 TYR SER SER LYS LYS LEU CYS THR LEU ALA ILE HIS ALA SEQRES 24 A 337 MET ASP ILE PRO PRO PRO THR GLY PRO THR TRP ALA LEU SEQRES 25 A 337 GLY ALA THR PHE ILE ARG LYS PHE TYR THR GLU PHE ASP SEQRES 26 A 337 ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU ALA ARG SEQRES 1 B 337 GLY ASN THR THR SER SER VAL ILE LEU THR ASN TYR MET SEQRES 2 B 337 ASP THR GLN TYR TYR GLY GLU ILE GLY ILE GLY THR PRO SEQRES 3 B 337 PRO GLN THR PHE LYS VAL VAL PHE ASP THR GLY SER SER SEQRES 4 B 337 ASN VAL TRP VAL PRO SER SER LYS CYS SER ARG LEU TYR SEQRES 5 B 337 THR ALA CYS VAL TYR HIS LYS LEU PHE ASP ALA SER ASP SEQRES 6 B 337 SER SER SER TYR LYS HIS ASN GLY THR GLU LEU THR LEU SEQRES 7 B 337 ARG TYR SER THR GLY THR VAL SER GLY PHE LEU SER GLN SEQRES 8 B 337 ASP ILE ILE THR VAL GLY GLY ILE THR VAL THR GLN MET SEQRES 9 B 337 PHE GLY GLU VAL THR GLU MET PRO ALA LEU PRO PHE MET SEQRES 10 B 337 LEU ALA GLU PHE ASP GLY VAL VAL GLY MET GLY PHE ILE SEQRES 11 B 337 GLU GLN ALA ILE GLY ARG VAL THR PRO ILE PHE ASP ASN SEQRES 12 B 337 ILE ILE SER GLN GLY VAL LEU LYS GLU ASP VAL PHE SER SEQRES 13 B 337 PHE TYR TYR ASN ARG ASP SER GLU ASN SER GLN SER LEU SEQRES 14 B 337 GLY GLY GLN ILE VAL LEU GLY GLY SER ASP PRO GLN HIS SEQRES 15 B 337 TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU ILE LYS THR SEQRES 16 B 337 GLY VAL TRP GLN ILE GLN MET LYS GLY VAL SER VAL GLY SEQRES 17 B 337 SER SER THR LEU LEU CYS GLU ASP GLY CYS LEU ALA LEU SEQRES 18 B 337 VAL ASP THR GLY ALA SER TYR ILE SER GLY SER THR SER SEQRES 19 B 337 SER ILE GLU LYS LEU MET GLU ALA LEU GLY ALA LYS LYS SEQRES 20 B 337 ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN GLU GLY PRO SEQRES 21 B 337 THR LEU PRO ASP ILE SER PHE HIS LEU GLY GLY LYS GLU SEQRES 22 B 337 TYR THR LEU THR SER ALA ASP TYR VAL PHE GLN GLU SER SEQRES 23 B 337 TYR SER SER LYS LYS LEU CYS THR LEU ALA ILE HIS ALA SEQRES 24 B 337 MET ASP ILE PRO PRO PRO THR GLY PRO THR TRP ALA LEU SEQRES 25 B 337 GLY ALA THR PHE ILE ARG LYS PHE TYR THR GLU PHE ASP SEQRES 26 B 337 ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU ALA ARG HET NAG A 401 14 HET 9G7 A 402 40 HET SO4 A 403 5 HET NAG B 401 14 HET 9G7 B 402 40 HET SO4 B 403 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 9G7 METHYL [(4S)-4-(3'-ETHYL-6-FLUORO[1,1'-BIPHENYL]-2-YL)- HETNAM 2 9G7 4-HYDROXY-4-{(3R)-1-[(PIPERIDIN-4-YL)ACETYL]PIPERIDIN- HETNAM 3 9G7 3-YL}BUTYL]CARBAMATE HETNAM SO4 SULFATE ION FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 9G7 2(C32 H44 F N3 O4) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *10(H2 O) HELIX 1 AA1 TYR A 52 TYR A 57 1 6 HELIX 2 AA2 ASP A 62 SER A 66 5 5 HELIX 3 AA3 PRO A 112 MET A 117 1 6 HELIX 4 AA4 ALA A 133 VAL A 137 5 5 HELIX 5 AA5 PRO A 139 GLN A 147 1 9 HELIX 6 AA6 ASP A 179 TYR A 183 5 5 HELIX 7 AA7 SER A 232 GLY A 244 1 13 HELIX 8 AA8 GLU A 258 LEU A 262 5 5 HELIX 9 AA9 THR A 277 VAL A 282 1 6 HELIX 10 AB1 GLY A 313 ARG A 318 1 6 HELIX 11 AB2 TYR B 52 TYR B 57 1 6 HELIX 12 AB3 ASP B 62 SER B 66 5 5 HELIX 13 AB4 PRO B 112 MET B 117 1 6 HELIX 14 AB5 PHE B 129 VAL B 137 5 9 HELIX 15 AB6 PRO B 139 SER B 146 1 8 HELIX 16 AB7 ASP B 179 GLN B 181 5 3 HELIX 17 AB8 SER B 232 GLY B 244 1 13 HELIX 18 AB9 ASN B 257 GLY B 259 5 3 HELIX 19 AC1 THR B 277 VAL B 282 1 6 HELIX 20 AC2 GLY B 313 ARG B 318 1 6 SHEET 1 AA1 9 LYS A 70 TYR A 80 0 SHEET 2 AA1 9 GLY A 83 VAL A 96 -1 O LEU A 89 N THR A 74 SHEET 3 AA1 9 GLN A 16 ILE A 23 -1 N GLY A 22 O THR A 95 SHEET 4 AA1 9 SER A 5 TYR A 12 -1 N THR A 10 O TYR A 18 SHEET 5 AA1 9 GLY A 171 LEU A 175 -1 O LEU A 175 N SER A 5 SHEET 6 AA1 9 VAL A 154 PHE A 157 -1 N SER A 156 O VAL A 174 SHEET 7 AA1 9 PHE A 320 ASP A 325 -1 O PHE A 324 N PHE A 155 SHEET 8 AA1 9 ARG A 330 LEU A 335 -1 O ALA A 334 N TYR A 321 SHEET 9 AA1 9 HIS A 188 ASN A 191 -1 N ILE A 190 O ILE A 331 SHEET 1 AA213 LYS A 70 TYR A 80 0 SHEET 2 AA213 GLY A 83 VAL A 96 -1 O LEU A 89 N THR A 74 SHEET 3 AA213 ILE A 99 GLU A 110 -1 O VAL A 101 N ILE A 94 SHEET 4 AA213 VAL A 41 PRO A 44 1 N VAL A 41 O GLY A 106 SHEET 5 AA213 GLY A 123 GLY A 126 -1 O VAL A 124 N TRP A 42 SHEET 6 AA213 GLN A 28 ASP A 35 1 N VAL A 33 O VAL A 125 SHEET 7 AA213 GLN A 16 ILE A 23 -1 N GLY A 19 O VAL A 32 SHEET 8 AA213 SER A 5 TYR A 12 -1 N THR A 10 O TYR A 18 SHEET 9 AA213 GLY A 171 LEU A 175 -1 O LEU A 175 N SER A 5 SHEET 10 AA213 VAL A 154 PHE A 157 -1 N SER A 156 O VAL A 174 SHEET 11 AA213 PHE A 320 ASP A 325 -1 O PHE A 324 N PHE A 155 SHEET 12 AA213 ARG A 330 LEU A 335 -1 O ALA A 334 N TYR A 321 SHEET 13 AA213 HIS A 188 ASN A 191 -1 N ILE A 190 O ILE A 331 SHEET 1 AA3 3 GLN A 199 MET A 202 0 SHEET 2 AA3 3 CYS A 218 VAL A 222 -1 O CYS A 218 N MET A 202 SHEET 3 AA3 3 TRP A 310 LEU A 312 1 O TRP A 310 N LEU A 221 SHEET 1 AA4 4 SER A 210 LEU A 213 0 SHEET 2 AA4 4 GLY A 204 VAL A 207 -1 N VAL A 207 O SER A 210 SHEET 3 AA4 4 ILE A 265 LEU A 269 -1 O SER A 266 N SER A 206 SHEET 4 AA4 4 LYS A 272 LEU A 276 -1 O TYR A 274 N PHE A 267 SHEET 1 AA5 2 ILE A 229 GLY A 231 0 SHEET 2 AA5 2 ILE A 297 ALA A 299 1 O HIS A 298 N ILE A 229 SHEET 1 AA6 3 LYS A 246 LYS A 247 0 SHEET 2 AA6 3 TYR A 252 LYS A 255 -1 O VAL A 253 N LYS A 246 SHEET 3 AA6 3 LEU A 292 LEU A 295 -1 O CYS A 293 N VAL A 254 SHEET 1 AA7 9 GLU B 75 LEU B 78 0 SHEET 2 AA7 9 VAL B 85 VAL B 96 -1 O VAL B 85 N LEU B 78 SHEET 3 AA7 9 GLN B 16 ILE B 23 -1 N GLY B 22 O THR B 95 SHEET 4 AA7 9 SER B 5 TYR B 12 -1 N THR B 10 O TYR B 18 SHEET 5 AA7 9 GLY B 171 LEU B 175 -1 O LEU B 175 N SER B 5 SHEET 6 AA7 9 VAL B 154 TYR B 159 -1 N SER B 156 O VAL B 174 SHEET 7 AA7 9 PHE B 320 ASP B 325 -1 O PHE B 324 N PHE B 155 SHEET 8 AA7 9 ARG B 330 ALA B 336 -1 O GLY B 332 N GLU B 323 SHEET 9 AA7 9 TYR B 183 ASN B 191 -1 N ILE B 190 O ILE B 331 SHEET 1 AA813 GLU B 75 LEU B 78 0 SHEET 2 AA813 VAL B 85 VAL B 96 -1 O VAL B 85 N LEU B 78 SHEET 3 AA813 ILE B 99 GLU B 110 -1 O GLU B 107 N PHE B 88 SHEET 4 AA813 VAL B 41 PRO B 44 1 N VAL B 41 O GLY B 106 SHEET 5 AA813 GLY B 123 GLY B 126 -1 O VAL B 124 N TRP B 42 SHEET 6 AA813 GLN B 28 ASP B 35 1 N VAL B 33 O VAL B 125 SHEET 7 AA813 GLN B 16 ILE B 23 -1 N GLY B 19 O VAL B 32 SHEET 8 AA813 SER B 5 TYR B 12 -1 N THR B 10 O TYR B 18 SHEET 9 AA813 GLY B 171 LEU B 175 -1 O LEU B 175 N SER B 5 SHEET 10 AA813 VAL B 154 TYR B 159 -1 N SER B 156 O VAL B 174 SHEET 11 AA813 PHE B 320 ASP B 325 -1 O PHE B 324 N PHE B 155 SHEET 12 AA813 ARG B 330 ALA B 336 -1 O GLY B 332 N GLU B 323 SHEET 13 AA813 TYR B 183 ASN B 191 -1 N ILE B 190 O ILE B 331 SHEET 1 AA9 4 SER B 210 LEU B 213 0 SHEET 2 AA9 4 GLN B 199 VAL B 207 -1 N VAL B 207 O SER B 210 SHEET 3 AA9 4 ILE B 265 LEU B 269 -1 O HIS B 268 N LYS B 203 SHEET 4 AA9 4 LYS B 272 LEU B 276 -1 O LEU B 276 N ILE B 265 SHEET 1 AB1 4 SER B 210 LEU B 213 0 SHEET 2 AB1 4 GLN B 199 VAL B 207 -1 N VAL B 207 O SER B 210 SHEET 3 AB1 4 CYS B 218 VAL B 222 -1 O ALA B 220 N ILE B 200 SHEET 4 AB1 4 TRP B 310 LEU B 312 1 O TRP B 310 N LEU B 221 SHEET 1 AB2 2 ILE B 229 GLY B 231 0 SHEET 2 AB2 2 ILE B 297 ALA B 299 1 O HIS B 298 N ILE B 229 SHEET 1 AB3 3 LYS B 246 LYS B 247 0 SHEET 2 AB3 3 TYR B 252 LYS B 255 -1 O VAL B 253 N LYS B 246 SHEET 3 AB3 3 LEU B 292 THR B 294 -1 O CYS B 293 N VAL B 254 SSBOND 1 CYS A 48 CYS A 55 1555 1555 2.04 SSBOND 2 CYS A 214 CYS A 218 1555 1555 2.04 SSBOND 3 CYS A 256 CYS A 293 1555 1555 2.05 SSBOND 4 CYS B 48 CYS B 55 1555 1555 2.04 SSBOND 5 CYS B 214 CYS B 218 1555 1555 2.03 SSBOND 6 CYS B 256 CYS B 293 1555 1555 2.05 LINK ND2 ASN A 72 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN B 72 C1 NAG B 401 1555 1555 1.45 CISPEP 1 THR A 25 PRO A 26 0 0.51 CISPEP 2 LEU A 114 PRO A 115 0 9.34 CISPEP 3 PRO A 304 PRO A 305 0 10.13 CISPEP 4 GLY A 307 PRO A 308 0 -1.77 CISPEP 5 THR B 25 PRO B 26 0 -4.13 CISPEP 6 LEU B 114 PRO B 115 0 8.21 CISPEP 7 PRO B 304 PRO B 305 0 -1.14 CISPEP 8 GLY B 307 PRO B 308 0 7.34 CRYST1 55.378 103.847 145.520 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006872 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.532947 0.837350 -0.121702 27.87502 1 MTRIX2 2 0.845432 -0.521040 0.117316 -52.87689 1 MTRIX3 2 0.034823 -0.165414 -0.985609 -43.77201 1