HEADER ISOMERASE,OXIDOREDUCTASE 09-MAY-17 5VR0 TITLE CRYSTAL STRUCTURE OF GLUCOSE ISOMERASE FROM STREPTOMYCES RUBIGINOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE), RADIATION DAMAGE, KEYWDS 2 ISOMERASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOREK,Z.OTWINOWSKI REVDAT 4 04-OCT-23 5VR0 1 LINK REVDAT 3 01-JAN-20 5VR0 1 REMARK REVDAT 2 20-FEB-19 5VR0 1 REMARK REVDAT 1 02-MAY-18 5VR0 0 JRNL AUTH D.BOREK,R.BROMBERG,J.HATTNE,Z.OTWINOWSKI JRNL TITL REAL-SPACE ANALYSIS OF RADIATION-INDUCED SPECIFIC CHANGES JRNL TITL 2 WITH INDEPENDENT COMPONENT ANALYSIS. JRNL REF J SYNCHROTRON RADIAT V. 25 451 2018 JRNL REFN ESSN 1600-5775 JRNL PMID 29488925 JRNL DOI 10.1107/S1600577517018148 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 48877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1210 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.1560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3356 ; 0.007 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2884 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4574 ; 1.333 ; 1.779 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6792 ; 0.495 ; 1.762 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.441 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;26.983 ;18.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;12.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4043 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 0.587 ; 0.476 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1647 ; 0.587 ; 0.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 0.971 ; 0.711 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2084 ; 0.964 ; 0.711 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 1.122 ; 0.598 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1711 ; 1.122 ; 0.599 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2486 ; 1.812 ; 0.857 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4031 ; 4.657 ; 7.541 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3868 ; 4.054 ; 6.344 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2242 34.7452 29.1279 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.0526 REMARK 3 T33: 0.0226 T12: -0.0311 REMARK 3 T13: 0.0248 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 5.3185 L22: 1.8497 REMARK 3 L33: 2.6907 L12: 2.7700 REMARK 3 L13: 2.6487 L23: 0.6338 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: -0.2511 S13: 0.1166 REMARK 3 S21: 0.0725 S22: -0.1679 S23: 0.0978 REMARK 3 S31: 0.1429 S32: -0.0742 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3442 25.7333 9.4782 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0614 REMARK 3 T33: 0.0570 T12: -0.0197 REMARK 3 T13: 0.0197 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.5113 L22: 0.0286 REMARK 3 L33: 0.1058 L12: 0.0021 REMARK 3 L13: -0.1746 L23: -0.0465 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.1125 S13: -0.0922 REMARK 3 S21: 0.0076 S22: 0.0124 S23: 0.0020 REMARK 3 S31: 0.0044 S32: -0.0229 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6787 19.0953 20.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.0374 REMARK 3 T33: 0.0661 T12: -0.0030 REMARK 3 T13: 0.0132 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.2316 L22: 1.3649 REMARK 3 L33: 2.8091 L12: 0.2550 REMARK 3 L13: -1.6058 L23: 0.6360 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0700 S13: -0.0899 REMARK 3 S21: 0.0753 S22: -0.0706 S23: -0.0856 REMARK 3 S31: 0.0338 S32: 0.0514 S33: 0.0602 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1830 22.1849 12.2132 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0493 REMARK 3 T33: 0.0517 T12: -0.0153 REMARK 3 T13: 0.0165 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.6403 REMARK 3 L33: 1.6066 L12: 0.1282 REMARK 3 L13: -0.1070 L23: 0.5945 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0115 S13: -0.0138 REMARK 3 S21: 0.0296 S22: -0.0380 S23: -0.0103 REMARK 3 S31: 0.1170 S32: -0.0311 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5476 10.0355 10.4202 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0209 REMARK 3 T33: 0.0529 T12: -0.0286 REMARK 3 T13: 0.0385 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.7277 L22: 2.2470 REMARK 3 L33: 7.6800 L12: -0.1387 REMARK 3 L13: 0.2757 L23: 0.9897 REMARK 3 S TENSOR REMARK 3 S11: -0.1084 S12: -0.0243 S13: -0.1296 REMARK 3 S21: -0.0136 S22: 0.0432 S23: -0.0156 REMARK 3 S31: 0.4052 S32: -0.1008 S33: 0.0653 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1743 24.1024 2.2198 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.0509 REMARK 3 T33: 0.0685 T12: -0.0183 REMARK 3 T13: 0.0190 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0605 L22: 0.1963 REMARK 3 L33: 0.7729 L12: 0.0686 REMARK 3 L13: -0.0652 L23: -0.2748 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0001 S13: -0.0274 REMARK 3 S21: -0.0114 S22: -0.0344 S23: 0.0137 REMARK 3 S31: 0.0522 S32: -0.0046 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7949 21.3865 6.3537 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.0496 REMARK 3 T33: 0.0534 T12: -0.0317 REMARK 3 T13: 0.0144 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6016 L22: 1.8732 REMARK 3 L33: 2.6778 L12: 0.5827 REMARK 3 L13: -1.5143 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.1369 S13: -0.1115 REMARK 3 S21: -0.0914 S22: -0.0438 S23: -0.0818 REMARK 3 S31: 0.0291 S32: -0.0509 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4745 24.0862 14.1478 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.1110 REMARK 3 T33: 0.0270 T12: -0.0699 REMARK 3 T13: 0.0276 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.0673 L22: 5.3180 REMARK 3 L33: 4.5296 L12: -3.0349 REMARK 3 L13: 1.0011 L23: -4.1090 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0075 S13: -0.0828 REMARK 3 S21: 0.1027 S22: 0.0078 S23: 0.0653 REMARK 3 S31: -0.1099 S32: -0.0278 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9977 34.4407 -5.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0577 REMARK 3 T33: 0.0585 T12: -0.0138 REMARK 3 T13: 0.0021 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.1573 L22: 0.0472 REMARK 3 L33: 0.2887 L12: -0.0725 REMARK 3 L13: -0.0764 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0124 S13: -0.0212 REMARK 3 S21: -0.0149 S22: -0.0206 S23: 0.0165 REMARK 3 S31: 0.0221 S32: -0.0233 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7257 29.0853 9.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0753 REMARK 3 T33: 0.0712 T12: -0.0236 REMARK 3 T13: 0.0245 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2095 L22: 0.6057 REMARK 3 L33: 3.9443 L12: 0.8337 REMARK 3 L13: -0.2549 L23: 0.1721 REMARK 3 S TENSOR REMARK 3 S11: 0.1070 S12: -0.1527 S13: 0.0553 REMARK 3 S21: 0.0758 S22: -0.1241 S23: 0.0417 REMARK 3 S31: 0.0001 S32: -0.1839 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1918 40.3231 -0.4612 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0559 REMARK 3 T33: 0.0529 T12: -0.0069 REMARK 3 T13: 0.0028 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.1773 L22: 0.3052 REMARK 3 L33: 0.1959 L12: -0.0689 REMARK 3 L13: -0.1465 L23: -0.0821 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0122 S13: -0.0017 REMARK 3 S21: -0.0048 S22: -0.0285 S23: 0.0117 REMARK 3 S31: -0.0060 S32: -0.0044 S33: 0.0094 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6665 40.2796 0.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0794 REMARK 3 T33: 0.0668 T12: -0.0045 REMARK 3 T13: -0.0039 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.5818 L22: 1.7046 REMARK 3 L33: 2.6717 L12: 1.4638 REMARK 3 L13: 0.3175 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0736 S13: 0.0733 REMARK 3 S21: -0.0512 S22: -0.0287 S23: 0.1097 REMARK 3 S31: 0.1089 S32: -0.2929 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9272 44.5799 9.7858 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.0561 REMARK 3 T33: 0.0465 T12: -0.0060 REMARK 3 T13: 0.0062 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.7015 L22: 0.4533 REMARK 3 L33: 0.0655 L12: -0.0590 REMARK 3 L13: -0.1029 L23: 0.1575 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0175 S13: -0.0152 REMARK 3 S21: -0.0104 S22: -0.0235 S23: 0.0119 REMARK 3 S31: -0.0053 S32: -0.0106 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7958 39.7192 8.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0610 REMARK 3 T33: 0.0386 T12: -0.0202 REMARK 3 T13: -0.0088 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.0071 L22: 0.9557 REMARK 3 L33: 3.1156 L12: -1.3546 REMARK 3 L13: 1.9047 L23: -1.0699 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: 0.1659 S13: -0.0062 REMARK 3 S21: -0.0276 S22: -0.0882 S23: 0.0025 REMARK 3 S31: -0.0131 S32: 0.3061 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5616 43.8308 18.7328 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0533 REMARK 3 T33: 0.0505 T12: -0.0065 REMARK 3 T13: 0.0129 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.3131 L22: 0.6554 REMARK 3 L33: 0.1365 L12: 0.0040 REMARK 3 L13: 0.1620 L23: 0.1167 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0392 S13: -0.0109 REMARK 3 S21: 0.0306 S22: -0.0074 S23: 0.0075 REMARK 3 S31: -0.0075 S32: -0.0175 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2747 37.5922 22.8693 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0518 REMARK 3 T33: 0.0442 T12: -0.0059 REMARK 3 T13: 0.0078 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.1552 L22: 0.4261 REMARK 3 L33: 0.1296 L12: -0.1321 REMARK 3 L13: -0.0698 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.0402 S13: -0.0439 REMARK 3 S21: 0.0403 S22: -0.0239 S23: 0.0285 REMARK 3 S31: 0.0035 S32: -0.0067 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 324 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7282 63.6532 29.2365 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0513 REMARK 3 T33: 0.0402 T12: 0.0029 REMARK 3 T13: 0.0159 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.6769 L22: 4.7953 REMARK 3 L33: 3.5751 L12: -1.7253 REMARK 3 L13: 0.9640 L23: -1.5985 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.0005 S13: 0.0080 REMARK 3 S21: 0.1496 S22: 0.0110 S23: 0.0388 REMARK 3 S31: -0.0597 S32: 0.0565 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 332 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6913 75.0796 12.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0548 REMARK 3 T33: 0.0631 T12: 0.0308 REMARK 3 T13: 0.0019 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.9783 L22: 0.6573 REMARK 3 L33: 0.7931 L12: -0.1405 REMARK 3 L13: 0.6089 L23: -0.5728 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.1045 S13: 0.0737 REMARK 3 S21: 0.1113 S22: 0.0065 S23: 0.0465 REMARK 3 S31: -0.1210 S32: -0.0946 S33: 0.0505 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 367 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5408 64.5961 22.2709 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0587 REMARK 3 T33: 0.0458 T12: -0.0012 REMARK 3 T13: 0.0018 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.3390 L22: 1.1021 REMARK 3 L33: 0.6353 L12: -0.3053 REMARK 3 L13: 0.4619 L23: -0.4290 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.0161 S13: 0.0319 REMARK 3 S21: 0.0655 S22: -0.0265 S23: 0.0068 REMARK 3 S31: -0.0352 S32: -0.0078 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 383 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8072 53.9334 29.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.0427 T22: 0.0458 REMARK 3 T33: 0.0116 T12: -0.0059 REMARK 3 T13: -0.0085 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.1003 L22: 5.6566 REMARK 3 L33: 4.3154 L12: -1.3968 REMARK 3 L13: -0.5771 L23: 2.2170 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.1128 S13: -0.0412 REMARK 3 S21: 0.2356 S22: 0.0142 S23: -0.0561 REMARK 3 S31: 0.2654 S32: 0.0595 S33: -0.0428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 43.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 125.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1XIB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACL2, 16-22% MPD (V/V) AND 0.1 REMARK 280 M TRIS-HCL PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.42700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.03050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.13950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.42700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.03050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.13950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.42700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.03050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.13950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.42700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.03050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.13950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 43030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -857.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.85400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 98.06100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.85400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 98.06100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 838 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 152 O HOH A 750 4565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -76.65 -83.44 REMARK 500 ASP A 24 -167.68 -121.53 REMARK 500 PHE A 26 17.04 -145.08 REMARK 500 PHE A 94 -25.42 -140.74 REMARK 500 GLU A 186 108.41 79.11 REMARK 500 GLU A 186 107.64 80.07 REMARK 500 ASN A 247 -169.53 -171.37 REMARK 500 LYS A 253 -172.91 -176.35 REMARK 500 ALA A 343 66.02 -151.67 REMARK 500 PHE A 357 -74.30 -156.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.08 SIDE CHAIN REMARK 500 ARG A 205 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 617 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 895 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 GLU A 8 OE2 43.1 REMARK 620 3 HOH A 650 O 63.5 53.3 REMARK 620 4 HOH A 721 O 60.3 51.6 3.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 391 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 85.8 REMARK 620 3 ASP A 245 OD2 101.4 97.1 REMARK 620 4 ASP A 287 OD2 157.7 83.3 99.2 REMARK 620 5 HOH A 630 O 98.8 170.2 90.5 89.5 REMARK 620 6 HOH A 631 O 77.9 97.0 165.8 84.2 75.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 390 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HIS A 220 NE2 77.0 REMARK 620 3 ASP A 255 OD1 108.3 91.6 REMARK 620 4 ASP A 255 OD2 158.7 88.8 55.7 REMARK 620 5 ASP A 257 OD1 88.4 162.3 83.3 102.1 REMARK 620 6 HOH A 837 O 99.9 100.1 151.3 98.2 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 893 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 295 OD2 REMARK 620 2 ASP A 297 OD2 118.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 894 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 339 O REMARK 620 2 HOH A 573 O 89.5 REMARK 620 3 HOH A 594 O 90.5 81.1 REMARK 620 4 HOH A 622 O 95.2 154.3 73.7 REMARK 620 5 HOH A 666 O 102.0 67.8 146.2 134.9 REMARK 620 6 HOH A 676 O 176.8 87.6 90.4 87.9 75.7 REMARK 620 7 HOH A 878 O 73.9 122.6 150.5 82.8 63.1 106.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 881 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 882 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 883 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 884 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 885 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 886 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 887 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 889 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 890 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 891 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 893 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 894 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 895 DBREF 5VR0 A 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET MRD A 389 8 HET MN A 390 1 HET MN A 391 1 HET CL A 881 1 HET CL A 882 1 HET CL A 883 1 HET CL A 884 1 HET CL A 885 1 HET CL A 886 1 HET CL A 887 1 HET CL A 888 1 HET CL A 889 1 HET CL A 890 1 HET CL A 891 1 HET CL A 892 1 HET CA A 893 1 HET CA A 894 1 HET CA A 895 1 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 MRD C6 H14 O2 FORMUL 3 MN 2(MN 2+) FORMUL 5 CL 12(CL 1-) FORMUL 17 CA 3(CA 2+) FORMUL 20 HOH *489(H2 O) HELIX 1 AA1 THR A 6 ASP A 9 5 4 HELIX 2 AA2 LEU A 15 GLY A 19 1 5 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 ASP A 55 ILE A 59 1 5 HELIX 5 AA5 SER A 64 GLY A 83 1 20 HELIX 6 AA6 HIS A 96 LYS A 100 5 5 HELIX 7 AA7 ASP A 108 LEU A 129 1 22 HELIX 8 AA8 SER A 145 LYS A 149 5 5 HELIX 9 AA9 ASP A 150 GLY A 173 1 24 HELIX 10 AB1 THR A 195 GLU A 204 1 10 HELIX 11 AB2 ARG A 208 GLU A 210 5 3 HELIX 12 AB3 GLU A 217 MET A 223 1 7 HELIX 13 AB4 ASN A 227 ALA A 238 1 12 HELIX 14 AB5 ASP A 264 GLY A 279 1 16 HELIX 15 AB6 ASP A 295 ASP A 323 1 29 HELIX 16 AB7 ASP A 323 SER A 333 1 11 HELIX 17 AB8 ARG A 334 ALA A 339 1 6 HELIX 18 AB9 GLY A 346 ASP A 352 1 7 HELIX 19 AC1 ASP A 353 PHE A 357 5 5 HELIX 20 AC2 ASP A 361 ARG A 368 1 8 HELIX 21 AC3 ALA A 371 GLY A 385 1 15 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 MET A 88 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N PHE A 53 O THR A 90 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 LINK OE1 GLU A 8 CA CA A 895 1555 6555 3.02 LINK OE2 GLU A 8 CA CA A 895 1555 6555 2.96 LINK OE2 GLU A 181 MN MN A 391 1555 1555 2.30 LINK OE2 GLU A 217 MN MN A 390 1555 1555 2.04 LINK OE1 GLU A 217 MN MN A 391 1555 1555 2.31 LINK NE2 HIS A 220 MN MN A 390 1555 1555 2.41 LINK OD2 ASP A 245 MN MN A 391 1555 1555 2.24 LINK OD1 ASP A 255 MN MN A 390 1555 1555 2.34 LINK OD2 ASP A 255 MN MN A 390 1555 1555 2.35 LINK OD1 ASP A 257 MN MN A 390 1555 1555 2.18 LINK OD2 ASP A 287 MN MN A 391 1555 1555 2.31 LINK OD2 ASP A 295 CA CA A 893 1555 1555 2.56 LINK OD2 ASP A 297 CA CA A 893 1555 1555 2.90 LINK O ALA A 339 CA CA A 894 1555 1555 2.42 LINK MN MN A 390 O HOH A 837 1555 1555 2.19 LINK MN MN A 391 O HOH A 630 1555 1555 2.42 LINK MN MN A 391 O HOH A 631 1555 1555 2.52 LINK O HOH A 573 CA CA A 894 1555 1555 2.31 LINK O HOH A 594 CA CA A 894 1555 1555 2.59 LINK O HOH A 622 CA CA A 894 1555 1555 2.30 LINK O HOH A 650 CA CA A 895 6554 1555 2.30 LINK O HOH A 666 CA CA A 894 1555 1555 2.64 LINK O HOH A 676 CA CA A 894 7555 1555 2.36 LINK O HOH A 721 CA CA A 895 4565 1555 2.74 LINK O HOH A 878 CA CA A 894 4565 1555 2.32 CISPEP 1 GLU A 186 PRO A 187 0 14.56 CISPEP 2 GLU A 186 PRO A 187 0 13.93 SITE 1 AC1 7 PRO A 25 PHE A 26 HIS A 54 THR A 95 SITE 2 AC1 7 HOH A 562 HOH A 798 HOH A 855 SITE 1 AC2 5 GLU A 217 HIS A 220 ASP A 255 ASP A 257 SITE 2 AC2 5 HOH A 837 SITE 1 AC3 6 GLU A 181 GLU A 217 ASP A 245 ASP A 287 SITE 2 AC3 6 HOH A 630 HOH A 631 SITE 1 AC4 4 GLU A 204 PRO A 209 LYS A 240 HOH A 512 SITE 1 AC5 3 ALA A 201 ARG A 205 GLN A 234 SITE 1 AC6 6 GLY A 239 LYS A 240 LEU A 241 HOH A 479 SITE 2 AC6 6 HOH A 834 HOH A 866 SITE 1 AC7 6 GLU A 294 ASP A 295 GLY A 369 MET A 370 SITE 2 AC7 6 ALA A 371 HOH A 783 SITE 1 AC8 4 ARG A 23 ASP A 28 ALA A 29 HOH A 854 SITE 1 AC9 3 ARG A 109 HOH A 684 CA A 895 SITE 1 AD1 4 ASP A 9 ARG A 284 TYR A 310 HOH A 835 SITE 1 AD2 2 ARG A 32 HOH A 797 SITE 1 AD3 3 THR A 30 GLU A 294 HOH A 531 SITE 1 AD4 6 ARG A 266 TRP A 270 HOH A 766 HOH A 816 SITE 2 AD4 6 HOH A 853 HOH A 863 SITE 1 AD5 4 GLY A 263 ARG A 266 HOH A 532 HOH A 853 SITE 1 AD6 2 ASP A 295 ASP A 297 SITE 1 AD7 7 ALA A 339 HOH A 573 HOH A 594 HOH A 622 SITE 2 AD7 7 HOH A 666 HOH A 676 HOH A 878 SITE 1 AD8 4 GLU A 8 HOH A 650 HOH A 721 CL A 886 CRYST1 92.854 98.061 102.279 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009777 0.00000