HEADER TRANSFERASE 10-MAY-17 5VRH TITLE APOLIPOPROTEIN N-ACYLTRANSFERASE C387S ACTIVE SITE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN N-ACYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LNT, CUTE, B0657, JW0654; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LNT C387S, ACYL TRANSFERASE, MEMBRANE PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,C.L.NOLAND REVDAT 4 04-OCT-23 5VRH 1 REMARK REVDAT 3 09-AUG-17 5VRH 1 JRNL REVDAT 2 26-JUL-17 5VRH 1 JRNL REVDAT 1 12-JUL-17 5VRH 0 JRNL AUTH C.L.NOLAND,M.D.KATTKE,J.DIAO,S.L.GLOOR,H.PANTUA,M.REICHELT, JRNL AUTH 2 A.K.KATAKAM,D.YAN,J.KANG,I.ZILBERLEYB,M.XU,S.B.KAPADIA, JRNL AUTH 3 J.M.MURRAY JRNL TITL STRUCTURAL INSIGHTS INTO LIPOPROTEIN N-ACYLATION BY JRNL TITL 2 ESCHERICHIA COLI APOLIPOPROTEIN N-ACYLTRANSFERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6044 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28698362 JRNL DOI 10.1073/PNAS.1707813114 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2747 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 30207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0490 - 4.6027 1.00 3021 154 0.1887 0.2109 REMARK 3 2 4.6027 - 3.6540 0.93 2757 139 0.1769 0.2210 REMARK 3 3 3.6540 - 3.1923 0.97 2871 142 0.1856 0.2352 REMARK 3 4 3.1923 - 2.9005 1.00 2936 150 0.2062 0.2484 REMARK 3 5 2.9005 - 2.6926 1.00 2966 138 0.2120 0.2775 REMARK 3 6 2.6926 - 2.5339 0.85 2516 126 0.2226 0.2982 REMARK 3 7 2.5339 - 2.4070 1.00 2917 171 0.2355 0.2807 REMARK 3 8 2.4070 - 2.3022 1.00 2925 127 0.2448 0.3089 REMARK 3 9 2.3022 - 2.2136 1.00 2951 161 0.2564 0.3195 REMARK 3 10 2.2136 - 2.1372 0.99 2886 153 0.2927 0.2976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4091 REMARK 3 ANGLE : 0.648 5548 REMARK 3 CHIRALITY : 0.042 614 REMARK 3 PLANARITY : 0.005 688 REMARK 3 DIHEDRAL : 9.610 3305 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1768 -1.7006 -1.6683 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.1895 REMARK 3 T33: 0.2007 T12: -0.0242 REMARK 3 T13: 0.0030 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.1142 L22: 1.0582 REMARK 3 L33: 1.7335 L12: -0.2253 REMARK 3 L13: 0.1253 L23: -0.0460 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.1269 S13: -0.1199 REMARK 3 S21: 0.1923 S22: -0.0255 S23: 0.0324 REMARK 3 S31: 0.1089 S32: 0.0656 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7127 7.0878 -14.9569 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1765 REMARK 3 T33: 0.2488 T12: -0.0082 REMARK 3 T13: 0.0002 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3233 L22: 0.6331 REMARK 3 L33: 0.9797 L12: 0.0656 REMARK 3 L13: 0.3271 L23: -0.1990 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.0650 S13: 0.0147 REMARK 3 S21: 0.0258 S22: 0.0017 S23: 0.0657 REMARK 3 S31: -0.1327 S32: -0.0748 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8103 3.9670 -29.5616 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.2117 REMARK 3 T33: 0.2314 T12: -0.0214 REMARK 3 T13: -0.0017 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 1.1156 REMARK 3 L33: 2.2134 L12: 0.0413 REMARK 3 L13: -0.1200 L23: 0.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.1047 S13: -0.0669 REMARK 3 S21: -0.0624 S22: 0.0286 S23: -0.2000 REMARK 3 S31: -0.0282 S32: 0.2651 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 - 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.137 REMARK 200 RESOLUTION RANGE LOW (A) : 42.041 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 5VRG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.7 - 6.3, 27% PEG 500 REMARK 280 DME, 0.1 M SODIUM CHLORIDE, 0.1 M MAGNESIUM CHLORIDE, AND 0.01 M REMARK 280 COPPER(II) CHLORIDE DIHYDRATE, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.29300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 SER A 349 REMARK 465 ILE A 350 REMARK 465 LEU A 351 REMARK 465 ARG A 352 REMARK 465 PRO A 353 REMARK 465 LEU A 354 REMARK 465 ALA A 355 REMARK 465 PRO A 356 REMARK 465 PHE A 357 REMARK 465 PHE A 358 REMARK 465 ASP A 359 REMARK 465 LEU A 360 REMARK 465 PRO A 361 REMARK 465 MET A 362 REMARK 465 ARG A 508 REMARK 465 GLN A 509 REMARK 465 ARG A 510 REMARK 465 ARG A 511 REMARK 465 LYS A 512 REMARK 465 GLY A 513 REMARK 465 ASN A 514 REMARK 465 SER A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 347 CG CD1 CD2 REMARK 470 LEU A 507 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 133 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 144 -11.95 73.27 REMARK 500 PRO A 147 30.88 -86.42 REMARK 500 LEU A 149 74.73 65.93 REMARK 500 PRO A 266 -167.54 -77.41 REMARK 500 ALA A 323 68.22 -157.43 REMARK 500 PHE A 341 -41.67 70.04 REMARK 500 SER A 387 -118.49 51.15 REMARK 500 SER A 387 -118.71 51.49 REMARK 500 LYS A 418 39.97 -87.36 REMARK 500 SER A 419 -140.33 -124.24 REMARK 500 ASN A 446 -1.67 -147.32 REMARK 500 ILE A 448 78.79 58.49 REMARK 500 PRO A 454 0.56 -67.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 152 TYR A 153 149.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 947 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 948 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 949 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 950 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 954 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 8.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 381 OE2 REMARK 620 2 ASP A 403 OD2 76.7 REMARK 620 3 HOH A 844 O 155.2 78.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VRG RELATED DB: PDB DBREF 5VRH A 2 512 UNP P23930 LNT_ECOLI 2 512 SEQADV 5VRH MET A -1 UNP P23930 INITIATING METHIONINE SEQADV 5VRH GLY A 0 UNP P23930 EXPRESSION TAG SEQADV 5VRH SER A 1 UNP P23930 EXPRESSION TAG SEQADV 5VRH SER A 387 UNP P23930 CYS 387 ENGINEERED MUTATION SEQADV 5VRH GLY A 513 UNP P23930 EXPRESSION TAG SEQADV 5VRH ASN A 514 UNP P23930 EXPRESSION TAG SEQADV 5VRH SER A 515 UNP P23930 EXPRESSION TAG SEQADV 5VRH HIS A 516 UNP P23930 EXPRESSION TAG SEQADV 5VRH HIS A 517 UNP P23930 EXPRESSION TAG SEQADV 5VRH HIS A 518 UNP P23930 EXPRESSION TAG SEQADV 5VRH HIS A 519 UNP P23930 EXPRESSION TAG SEQADV 5VRH HIS A 520 UNP P23930 EXPRESSION TAG SEQRES 1 A 522 MET GLY SER ALA PHE ALA SER LEU ILE GLU ARG GLN ARG SEQRES 2 A 522 ILE ARG LEU LEU LEU ALA LEU LEU PHE GLY ALA CYS GLY SEQRES 3 A 522 THR LEU ALA PHE SER PRO TYR ASP VAL TRP PRO ALA ALA SEQRES 4 A 522 ILE ILE SER LEU MET GLY LEU GLN ALA LEU THR PHE ASN SEQRES 5 A 522 ARG ARG PRO LEU GLN SER ALA ALA ILE GLY PHE CYS TRP SEQRES 6 A 522 GLY PHE GLY LEU PHE GLY SER GLY ILE ASN TRP VAL TYR SEQRES 7 A 522 VAL SER ILE ALA THR PHE GLY GLY MET PRO GLY PRO VAL SEQRES 8 A 522 ASN ILE PHE LEU VAL VAL LEU LEU ALA ALA TYR LEU SER SEQRES 9 A 522 LEU TYR THR GLY LEU PHE ALA GLY VAL LEU SER ARG LEU SEQRES 10 A 522 TRP PRO LYS THR THR TRP LEU ARG VAL ALA ILE ALA ALA SEQRES 11 A 522 PRO ALA LEU TRP GLN VAL THR GLU PHE LEU ARG GLY TRP SEQRES 12 A 522 VAL LEU THR GLY PHE PRO TRP LEU GLN PHE GLY TYR SER SEQRES 13 A 522 GLN ILE ASP GLY PRO LEU LYS GLY LEU ALA PRO ILE MET SEQRES 14 A 522 GLY VAL GLU ALA ILE ASN PHE LEU LEU MET MET VAL SER SEQRES 15 A 522 GLY LEU LEU ALA LEU ALA LEU VAL LYS ARG ASN TRP ARG SEQRES 16 A 522 PRO LEU VAL VAL ALA VAL VAL LEU PHE ALA LEU PRO PHE SEQRES 17 A 522 PRO LEU ARG TYR ILE GLN TRP PHE THR PRO GLN PRO GLU SEQRES 18 A 522 LYS THR ILE GLN VAL SER MET VAL GLN GLY ASP ILE PRO SEQRES 19 A 522 GLN SER LEU LYS TRP ASP GLU GLY GLN LEU LEU ASN THR SEQRES 20 A 522 LEU LYS ILE TYR TYR ASN ALA THR ALA PRO LEU MET GLY SEQRES 21 A 522 LYS SER SER LEU ILE ILE TRP PRO GLU SER ALA ILE THR SEQRES 22 A 522 ASP LEU GLU ILE ASN GLN GLN PRO PHE LEU LYS ALA LEU SEQRES 23 A 522 ASP GLY GLU LEU ARG ASP LYS GLY SER SER LEU VAL THR SEQRES 24 A 522 GLY ILE VAL ASP ALA ARG LEU ASN LYS GLN ASN ARG TYR SEQRES 25 A 522 ASP THR TYR ASN THR ILE ILE THR LEU GLY LYS GLY ALA SEQRES 26 A 522 PRO TYR SER TYR GLU SER ALA ASP ARG TYR ASN LYS ASN SEQRES 27 A 522 HIS LEU VAL PRO PHE GLY GLU PHE VAL PRO LEU GLU SER SEQRES 28 A 522 ILE LEU ARG PRO LEU ALA PRO PHE PHE ASP LEU PRO MET SEQRES 29 A 522 SER SER PHE SER ARG GLY PRO TYR ILE GLN PRO PRO LEU SEQRES 30 A 522 SER ALA ASN GLY ILE GLU LEU THR ALA ALA ILE SER TYR SEQRES 31 A 522 GLU ILE ILE LEU GLY GLU GLN VAL ARG ASP ASN PHE ARG SEQRES 32 A 522 PRO ASP THR ASP TYR LEU LEU THR ILE SER ASN ASP ALA SEQRES 33 A 522 TRP PHE GLY LYS SER ILE GLY PRO TRP GLN HIS PHE GLN SEQRES 34 A 522 MET ALA ARG MET ARG ALA LEU GLU LEU ALA ARG PRO LEU SEQRES 35 A 522 LEU ARG SER THR ASN ASN GLY ILE THR ALA VAL ILE GLY SEQRES 36 A 522 PRO GLN GLY GLU ILE GLN ALA MET ILE PRO GLN PHE THR SEQRES 37 A 522 ARG GLU VAL LEU THR THR ASN VAL THR PRO THR THR GLY SEQRES 38 A 522 LEU THR PRO TYR ALA ARG THR GLY ASN TRP PRO LEU TRP SEQRES 39 A 522 VAL LEU THR ALA LEU PHE GLY PHE ALA ALA VAL LEU MET SEQRES 40 A 522 SER LEU ARG GLN ARG ARG LYS GLY ASN SER HIS HIS HIS SEQRES 41 A 522 HIS HIS HET OLB A 601 25 HET OLB A 602 25 HET MG A 603 1 HET PLM A 604 18 HET PLM A 605 18 HET CL A 606 1 HET OLC A 607 25 HET OLC A 608 25 HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM MG MAGNESIUM ION HETNAM PLM PALMITIC ACID HETNAM CL CHLORIDE ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 OLB 2(C21 H40 O4) FORMUL 4 MG MG 2+ FORMUL 5 PLM 2(C16 H32 O2) FORMUL 7 CL CL 1- FORMUL 8 OLC 2(C21 H40 O4) FORMUL 10 HOH *258(H2 O) HELIX 1 AA1 SER A 5 GLU A 8 5 4 HELIX 2 AA2 ARG A 9 GLY A 24 1 16 HELIX 3 AA3 THR A 25 PHE A 28 5 4 HELIX 4 AA4 TRP A 34 THR A 48 1 15 HELIX 5 AA5 ARG A 52 ILE A 72 1 21 HELIX 6 AA6 TRP A 74 GLY A 84 1 11 HELIX 7 AA7 PRO A 86 TRP A 116 1 31 HELIX 8 AA8 THR A 120 ILE A 126 1 7 HELIX 9 AA9 ILE A 126 GLY A 140 1 15 HELIX 10 AB1 TRP A 141 GLY A 145 5 5 HELIX 11 AB2 GLY A 152 ILE A 156 5 5 HELIX 12 AB3 LEU A 160 GLY A 162 5 3 HELIX 13 AB4 LEU A 163 GLY A 168 1 6 HELIX 14 AB5 GLY A 168 ARG A 190 1 23 HELIX 15 AB6 ASN A 191 LEU A 204 1 14 HELIX 16 AB7 PRO A 205 ILE A 211 5 7 HELIX 17 AB8 PRO A 218 THR A 221 5 4 HELIX 18 AB9 PRO A 232 TRP A 237 1 6 HELIX 19 AC1 ASP A 238 GLY A 240 5 3 HELIX 20 AC2 GLN A 241 ALA A 254 1 14 HELIX 21 AC3 PRO A 255 MET A 257 5 3 HELIX 22 AC4 GLN A 277 LYS A 291 1 15 HELIX 23 AC5 TYR A 388 ILE A 391 5 4 HELIX 24 AC6 LEU A 392 PHE A 400 1 9 HELIX 25 AC7 ASN A 412 GLY A 417 5 6 HELIX 26 AC8 ILE A 420 ALA A 437 1 18 HELIX 27 AC9 THR A 481 GLY A 487 1 7 HELIX 28 AD1 ASN A 488 SER A 506 1 19 SHEET 1 AA1 2 THR A 215 PRO A 216 0 SHEET 2 AA1 2 THR A 477 THR A 478 -1 O THR A 478 N THR A 215 SHEET 1 AA2 4 ILE A 270 LEU A 273 0 SHEET 2 AA2 4 SER A 294 LEU A 304 1 O GLY A 298 N ILE A 270 SHEET 3 AA2 4 TYR A 310 GLY A 320 -1 O TYR A 313 N ASP A 301 SHEET 4 AA2 4 ARG A 332 ASN A 334 -1 O TYR A 333 N ILE A 316 SHEET 1 AA3 5 ILE A 270 LEU A 273 0 SHEET 2 AA3 5 SER A 294 LEU A 304 1 O GLY A 298 N ILE A 270 SHEET 3 AA3 5 LEU A 262 ILE A 264 1 N ILE A 263 O VAL A 296 SHEET 4 AA3 5 ILE A 222 GLN A 228 1 N VAL A 227 O ILE A 264 SHEET 5 AA3 5 GLU A 468 VAL A 474 -1 O THR A 472 N VAL A 224 SHEET 1 AA4 6 LEU A 375 ALA A 377 0 SHEET 2 AA4 6 ILE A 380 ILE A 386 -1 O LEU A 382 N LEU A 375 SHEET 3 AA4 6 TYR A 406 SER A 411 1 O LEU A 408 N THR A 383 SHEET 4 AA4 6 LEU A 440 THR A 444 1 O LEU A 441 N LEU A 407 SHEET 5 AA4 6 ALA A 450 ILE A 452 -1 O ILE A 452 N LEU A 440 SHEET 6 AA4 6 ILE A 458 MET A 461 -1 O ALA A 460 N VAL A 451 LINK OE2 GLU A 381 MG MG A 603 1555 1555 2.07 LINK OD2 ASP A 403 MG MG A 603 1555 1555 2.55 LINK MG MG A 603 O HOH A 844 1555 1555 2.90 CISPEP 1 SER A 29 PRO A 30 0 3.92 SITE 1 AC1 5 TRP A 121 ASN A 191 PRO A 194 VAL A 197 SITE 2 AC1 5 HOH A 780 SITE 1 AC2 8 GLU A 394 THR A 486 ASN A 488 TRP A 489 SITE 2 AC2 8 THR A 495 ALA A 496 PLM A 605 HOH A 705 SITE 1 AC3 3 GLU A 381 ASP A 403 HOH A 844 SITE 1 AC4 5 ALA A 22 TYR A 31 ILE A 39 SER A 70 SITE 2 AC4 5 ASN A 73 SITE 1 AC5 3 PHE A 137 TRP A 492 OLB A 602 SITE 1 AC6 5 GLN A 233 LYS A 236 TRP A 237 ASN A 412 SITE 2 AC6 5 TRP A 415 SITE 1 AC7 8 ILE A 79 PHE A 82 ASN A 314 VAL A 339 SITE 2 AC7 8 PHE A 341 GLU A 343 TRP A 415 OLC A 608 SITE 1 AC8 12 PHE A 146 GLU A 267 LYS A 335 PHE A 341 SITE 2 AC8 12 GLU A 343 PRO A 346 SER A 387 TYR A 388 SITE 3 AC8 12 ASN A 412 TRP A 415 PHE A 416 OLC A 607 CRYST1 52.671 72.586 75.610 90.00 101.73 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018986 0.000000 0.003941 0.00000 SCALE2 0.000000 0.013777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013508 0.00000