HEADER OXIDOREDUCTASE 15-MAY-17 5VT3 TITLE HIGH RESOLUTION STRUCTURE OF THIOREDOXIN-DISULFIDE REDUCTASE FROM TITLE 2 VIBRIO VULNIFICUS CMCP6 IN COMPLEX WITH NADP AND FAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FLUVIALIS; SOURCE 3 ORGANISM_TAXID: 676; SOURCE 4 GENE: TRXB, VFL11327_00718; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, THIOREDOXIN-DISULFIDE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,S.GRIMSHAW,N.MALTSEVA,R.MULLIGAN,W.F.ANDERSON,A.JOACHIMIAK, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 04-OCT-23 5VT3 1 LINK REVDAT 1 31-MAY-17 5VT3 0 JRNL AUTH C.CHANG,S.GRIMSHAW,N.MALTSEVA,R.MULLIGAN,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL HIGH RESOLUTION STRUCTURE OF THIOREDOXIN-DISULFIDE REDUCTASE JRNL TITL 2 FROM VIBRIO VULNIFICUS CMCP6 IN COMPLEX WITH NADP AND FAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 49759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5740 - 5.1844 1.00 3168 172 0.1669 0.1919 REMARK 3 2 5.1844 - 4.1163 1.00 3002 184 0.1267 0.1580 REMARK 3 3 4.1163 - 3.5964 1.00 3008 161 0.1211 0.1610 REMARK 3 4 3.5964 - 3.2677 1.00 2964 162 0.1389 0.1707 REMARK 3 5 3.2677 - 3.0336 1.00 2969 172 0.1490 0.2098 REMARK 3 6 3.0336 - 2.8548 1.00 2965 140 0.1579 0.2014 REMARK 3 7 2.8548 - 2.7118 1.00 2941 151 0.1553 0.2331 REMARK 3 8 2.7118 - 2.5938 1.00 2946 165 0.1537 0.2054 REMARK 3 9 2.5938 - 2.4940 1.00 2938 169 0.1586 0.2153 REMARK 3 10 2.4940 - 2.4079 1.00 2937 140 0.1643 0.2229 REMARK 3 11 2.4079 - 2.3326 0.98 2883 149 0.1664 0.2212 REMARK 3 12 2.3326 - 2.2660 0.93 2706 153 0.1681 0.2592 REMARK 3 13 2.2660 - 2.2063 0.87 2545 146 0.1677 0.2078 REMARK 3 14 2.2063 - 2.1525 0.81 2360 130 0.1806 0.2445 REMARK 3 15 2.1525 - 2.1036 0.74 2172 111 0.1864 0.2420 REMARK 3 16 2.1036 - 2.0588 0.66 1927 112 0.1913 0.2342 REMARK 3 17 2.0588 - 2.0176 0.54 1571 81 0.1938 0.2914 REMARK 3 18 2.0176 - 1.9795 0.41 1196 63 0.2110 0.2894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5283 REMARK 3 ANGLE : 1.363 7214 REMARK 3 CHIRALITY : 0.083 798 REMARK 3 PLANARITY : 0.007 934 REMARK 3 DIHEDRAL : 18.706 3112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 37.8340 86.6515 26.3927 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.0871 REMARK 3 T33: 0.0884 T12: 0.0024 REMARK 3 T13: 0.0114 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.6088 L22: 0.7923 REMARK 3 L33: 0.7969 L12: -0.3268 REMARK 3 L13: 0.5521 L23: -0.6933 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.0044 S13: -0.0026 REMARK 3 S21: -0.0402 S22: 0.0379 S23: 0.0179 REMARK 3 S31: 0.0565 S32: -0.0336 S33: 0.1169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 40.565 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5USX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 MM POTASSIUM CHLORIDE, 80 MM REMARK 280 POTASSIUM CHLORIDE, 40 MM SODIUM CACODYLATE, 40% MPD, 12 MM REMARK 280 SPERMIDINE TETRAHYDROCHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.96550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.37900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.96550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.37900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET A 4 REMARK 465 ASP A 318 REMARK 465 LYS A 319 REMARK 465 SER B -2 REMARK 465 ASP B 318 REMARK 465 LYS B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 100 O HOH B 501 1.94 REMARK 500 OE2 GLU A 51 O HOH A 501 2.09 REMARK 500 OD1 ASP A 314 O HOH A 502 2.11 REMARK 500 OE1 GLU A 51 O HOH A 503 2.11 REMARK 500 OG SER A 166 OD1 ASN A 199 2.13 REMARK 500 O HOH B 528 O HOH B 652 2.15 REMARK 500 NH2 ARG B 75 O HOH B 502 2.16 REMARK 500 O HOH A 509 O HOH A 648 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 3 NE2 GLN B 253 4565 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 58 137.87 -38.04 REMARK 500 ALA A 102 166.17 73.51 REMARK 500 SER A 112 58.82 -143.67 REMARK 500 ARG A 145 122.60 -38.53 REMARK 500 ASP A 214 -162.43 -106.60 REMARK 500 SER A 267 -158.82 58.81 REMARK 500 THR A 276 -168.25 -77.40 REMARK 500 MET B 1 67.76 -111.67 REMARK 500 GLU B 58 138.50 -34.52 REMARK 500 GLU B 77 31.00 70.85 REMARK 500 ASP B 214 -165.26 -113.85 REMARK 500 SER B 267 -152.64 52.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 47 OG1 REMARK 620 2 GLU A 49 O 81.4 REMARK 620 3 GLU A 160 OE1 81.1 139.6 REMARK 620 4 GLU A 160 OE1 76.5 138.6 4.8 REMARK 620 5 GLU A 160 OE2 122.9 124.6 45.0 49.8 REMARK 620 6 FAD A 402 O4 137.4 90.9 125.7 128.7 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 47 OG1 REMARK 620 2 GLU B 49 O 83.2 REMARK 620 3 GLU B 160 OE1 69.7 132.5 REMARK 620 4 GLU B 160 OE1 81.6 135.2 12.2 REMARK 620 5 GLU B 160 OE2 120.5 116.1 55.8 44.0 REMARK 620 6 FAD B 403 O4 140.6 92.6 132.8 124.6 96.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07222 RELATED DB: TARGETTRACK DBREF1 5VT3 A 1 319 UNP A0A1L9L8C0_VIBFL DBREF2 5VT3 A A0A1L9L8C0 1 319 DBREF1 5VT3 B 1 319 UNP A0A1L9L8C0_VIBFL DBREF2 5VT3 B A0A1L9L8C0 1 319 SEQADV 5VT3 SER A -2 UNP A0A1L9L8C EXPRESSION TAG SEQADV 5VT3 ASN A -1 UNP A0A1L9L8C EXPRESSION TAG SEQADV 5VT3 ALA A 0 UNP A0A1L9L8C EXPRESSION TAG SEQADV 5VT3 SER B -2 UNP A0A1L9L8C EXPRESSION TAG SEQADV 5VT3 ASN B -1 UNP A0A1L9L8C EXPRESSION TAG SEQADV 5VT3 ALA B 0 UNP A0A1L9L8C EXPRESSION TAG SEQRES 1 A 322 SER ASN ALA MET SER ASP MET LYS HIS SER LYS LEU LEU SEQRES 2 A 322 ILE LEU GLY SER GLY PRO ALA GLY TYR THR ALA ALA VAL SEQRES 3 A 322 TYR ALA ALA ARG ALA ASN LEU ASN PRO VAL LEU ILE THR SEQRES 4 A 322 GLY MET GLN GLN GLY GLY GLN LEU THR THR THR THR GLU SEQRES 5 A 322 VAL GLU ASN TRP PRO GLY ASP PRO GLU GLY LEU THR GLY SEQRES 6 A 322 PRO GLY LEU MET ASP ARG MET LYS GLU HIS ALA GLU ARG SEQRES 7 A 322 PHE GLU THR GLU ILE ILE PHE ASP HIS ILE ASN GLU VAL SEQRES 8 A 322 ASP PHE SER THR ARG PRO PHE VAL LEU LYS GLY ASP ALA SEQRES 9 A 322 ALA SER TYR SER CYS ASP ALA LEU ILE ILE SER THR GLY SEQRES 10 A 322 ALA SER ALA LYS TYR LEU GLY LEU GLU SER GLU GLU ALA SEQRES 11 A 322 PHE LYS GLY ARG GLY VAL SER ALA CYS ALA THR CYS ASP SEQRES 12 A 322 GLY PHE PHE TYR ARG ASN GLN LYS VAL ALA VAL VAL GLY SEQRES 13 A 322 GLY GLY ASN THR ALA VAL GLU GLU ALA LEU TYR LEU SER SEQRES 14 A 322 ASN ILE ALA ALA GLU VAL HIS LEU ILE HIS ARG ARG ASP SEQRES 15 A 322 SER PHE ARG ALA GLU LYS ILE LEU ILE ASN ARG LEU MET SEQRES 16 A 322 ASP LYS VAL GLN ASN GLY ASN ILE VAL LEU HIS THR ASP SEQRES 17 A 322 ARG VAL LEU ASP GLU VAL LEU GLY ASP GLU MET GLY VAL SEQRES 18 A 322 THR GLY VAL ARG LEU LYS ASP VAL LYS THR GLY GLY THR SEQRES 19 A 322 GLU GLU LEU ASP VAL MET GLY ALA PHE ILE ALA ILE GLY SEQRES 20 A 322 HIS SER PRO ASN THR GLN ILE PHE GLN GLY GLN LEU ASP SEQRES 21 A 322 MET LYS ASP GLY TYR ILE LEU VAL LYS SER GLY LEU GLU SEQRES 22 A 322 GLY ASN ALA THR GLN THR SER VAL GLU GLY ILE PHE ALA SEQRES 23 A 322 ALA GLY ASP VAL MET ASP HIS ASN TYR ARG GLN ALA ILE SEQRES 24 A 322 THR SER ALA GLY THR GLY CYS MET ALA ALA LEU ASP ALA SEQRES 25 A 322 GLU ARG TYR LEU ASP SER LEU ASN ASP LYS SEQRES 1 B 322 SER ASN ALA MET SER ASP MET LYS HIS SER LYS LEU LEU SEQRES 2 B 322 ILE LEU GLY SER GLY PRO ALA GLY TYR THR ALA ALA VAL SEQRES 3 B 322 TYR ALA ALA ARG ALA ASN LEU ASN PRO VAL LEU ILE THR SEQRES 4 B 322 GLY MET GLN GLN GLY GLY GLN LEU THR THR THR THR GLU SEQRES 5 B 322 VAL GLU ASN TRP PRO GLY ASP PRO GLU GLY LEU THR GLY SEQRES 6 B 322 PRO GLY LEU MET ASP ARG MET LYS GLU HIS ALA GLU ARG SEQRES 7 B 322 PHE GLU THR GLU ILE ILE PHE ASP HIS ILE ASN GLU VAL SEQRES 8 B 322 ASP PHE SER THR ARG PRO PHE VAL LEU LYS GLY ASP ALA SEQRES 9 B 322 ALA SER TYR SER CYS ASP ALA LEU ILE ILE SER THR GLY SEQRES 10 B 322 ALA SER ALA LYS TYR LEU GLY LEU GLU SER GLU GLU ALA SEQRES 11 B 322 PHE LYS GLY ARG GLY VAL SER ALA CYS ALA THR CYS ASP SEQRES 12 B 322 GLY PHE PHE TYR ARG ASN GLN LYS VAL ALA VAL VAL GLY SEQRES 13 B 322 GLY GLY ASN THR ALA VAL GLU GLU ALA LEU TYR LEU SER SEQRES 14 B 322 ASN ILE ALA ALA GLU VAL HIS LEU ILE HIS ARG ARG ASP SEQRES 15 B 322 SER PHE ARG ALA GLU LYS ILE LEU ILE ASN ARG LEU MET SEQRES 16 B 322 ASP LYS VAL GLN ASN GLY ASN ILE VAL LEU HIS THR ASP SEQRES 17 B 322 ARG VAL LEU ASP GLU VAL LEU GLY ASP GLU MET GLY VAL SEQRES 18 B 322 THR GLY VAL ARG LEU LYS ASP VAL LYS THR GLY GLY THR SEQRES 19 B 322 GLU GLU LEU ASP VAL MET GLY ALA PHE ILE ALA ILE GLY SEQRES 20 B 322 HIS SER PRO ASN THR GLN ILE PHE GLN GLY GLN LEU ASP SEQRES 21 B 322 MET LYS ASP GLY TYR ILE LEU VAL LYS SER GLY LEU GLU SEQRES 22 B 322 GLY ASN ALA THR GLN THR SER VAL GLU GLY ILE PHE ALA SEQRES 23 B 322 ALA GLY ASP VAL MET ASP HIS ASN TYR ARG GLN ALA ILE SEQRES 24 B 322 THR SER ALA GLY THR GLY CYS MET ALA ALA LEU ASP ALA SEQRES 25 B 322 GLU ARG TYR LEU ASP SER LEU ASN ASP LYS HET NAP A 401 48 HET FAD A 402 53 HET K A 403 1 HET CAC A 404 5 HET GOL A 405 6 HET GOL B 401 6 HET NAP B 402 48 HET FAD B 403 53 HET K B 404 1 HET CAC B 405 5 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM K POTASSIUM ION HETNAM CAC CACODYLATE ION HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN CAC DIMETHYLARSINATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 K 2(K 1+) FORMUL 6 CAC 2(C2 H6 AS O2 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *457(H2 O) HELIX 1 AA1 GLY A 15 ALA A 28 1 14 HELIX 2 AA2 GLY A 42 THR A 47 5 6 HELIX 3 AA3 THR A 61 PHE A 76 1 16 HELIX 4 AA4 LEU A 122 PHE A 128 1 7 HELIX 5 AA5 CYS A 136 GLY A 141 1 6 HELIX 6 AA6 PHE A 142 ARG A 145 5 4 HELIX 7 AA7 GLY A 155 ASN A 167 1 13 HELIX 8 AA8 GLU A 184 GLY A 198 1 15 HELIX 9 AA9 THR A 249 GLN A 253 5 5 HELIX 10 AB1 GLY A 285 MET A 288 5 4 HELIX 11 AB2 GLN A 294 LEU A 316 1 23 HELIX 12 AB3 GLY B 15 ALA B 28 1 14 HELIX 13 AB4 GLY B 42 THR B 47 5 6 HELIX 14 AB5 THR B 61 PHE B 76 1 16 HELIX 15 AB6 LEU B 122 LYS B 129 1 8 HELIX 16 AB7 CYS B 136 GLY B 141 1 6 HELIX 17 AB8 PHE B 142 ARG B 145 5 4 HELIX 18 AB9 GLY B 155 ASN B 167 1 13 HELIX 19 AC1 GLU B 184 GLY B 198 1 15 HELIX 20 AC2 THR B 249 GLN B 253 5 5 HELIX 21 AC3 GLY B 285 MET B 288 5 4 HELIX 22 AC4 GLN B 294 ASN B 317 1 24 SHEET 1 AA1 6 GLU A 79 ILE A 81 0 SHEET 2 AA1 6 VAL A 33 ILE A 35 1 N LEU A 34 O GLU A 79 SHEET 3 AA1 6 HIS A 6 LEU A 12 1 N ILE A 11 O ILE A 35 SHEET 4 AA1 6 SER A 103 ILE A 111 1 O ILE A 110 N LEU A 12 SHEET 5 AA1 6 PHE A 95 GLY A 99 -1 N LEU A 97 O TYR A 104 SHEET 6 AA1 6 ILE A 85 ASP A 89 -1 N GLU A 87 O LYS A 98 SHEET 1 AA2 5 GLU A 79 ILE A 81 0 SHEET 2 AA2 5 VAL A 33 ILE A 35 1 N LEU A 34 O GLU A 79 SHEET 3 AA2 5 HIS A 6 LEU A 12 1 N ILE A 11 O ILE A 35 SHEET 4 AA2 5 SER A 103 ILE A 111 1 O ILE A 110 N LEU A 12 SHEET 5 AA2 5 ILE A 281 ALA A 283 1 O PHE A 282 N ILE A 111 SHEET 1 AA3 2 ALA A 115 ALA A 117 0 SHEET 2 AA3 2 HIS A 245 PRO A 247 -1 O SER A 246 N SER A 116 SHEET 1 AA4 5 VAL A 133 SER A 134 0 SHEET 2 AA4 5 GLY A 238 ILE A 241 1 O ILE A 241 N SER A 134 SHEET 3 AA4 5 LYS A 148 VAL A 152 1 N ALA A 150 O PHE A 240 SHEET 4 AA4 5 GLU A 171 ILE A 175 1 O ILE A 175 N VAL A 151 SHEET 5 AA4 5 ILE A 200 HIS A 203 1 O VAL A 201 N VAL A 172 SHEET 1 AA5 3 ARG A 206 GLY A 213 0 SHEET 2 AA5 3 VAL A 218 ASP A 225 -1 O ARG A 222 N ASP A 209 SHEET 3 AA5 3 THR A 231 ASP A 235 -1 O GLU A 232 N LEU A 223 SHEET 1 AA6 2 MET A 258 LYS A 259 0 SHEET 2 AA6 2 TYR A 262 ILE A 263 -1 O TYR A 262 N LYS A 259 SHEET 1 AA7 6 GLU B 79 ILE B 81 0 SHEET 2 AA7 6 VAL B 33 ILE B 35 1 N LEU B 34 O ILE B 81 SHEET 3 AA7 6 LYS B 5 LEU B 12 1 N ILE B 11 O ILE B 35 SHEET 4 AA7 6 SER B 103 ILE B 111 1 O ILE B 110 N LEU B 10 SHEET 5 AA7 6 PHE B 95 GLY B 99 -1 N LEU B 97 O TYR B 104 SHEET 6 AA7 6 ILE B 85 ASP B 89 -1 N GLU B 87 O LYS B 98 SHEET 1 AA8 5 GLU B 79 ILE B 81 0 SHEET 2 AA8 5 VAL B 33 ILE B 35 1 N LEU B 34 O ILE B 81 SHEET 3 AA8 5 LYS B 5 LEU B 12 1 N ILE B 11 O ILE B 35 SHEET 4 AA8 5 SER B 103 ILE B 111 1 O ILE B 110 N LEU B 10 SHEET 5 AA8 5 ILE B 281 ALA B 283 1 O PHE B 282 N ILE B 111 SHEET 1 AA9 2 ALA B 115 ALA B 117 0 SHEET 2 AA9 2 HIS B 245 PRO B 247 -1 O SER B 246 N SER B 116 SHEET 1 AB1 5 VAL B 133 SER B 134 0 SHEET 2 AB1 5 GLY B 238 ILE B 241 1 O ILE B 241 N SER B 134 SHEET 3 AB1 5 LYS B 148 VAL B 152 1 N ALA B 150 O PHE B 240 SHEET 4 AB1 5 GLU B 171 ILE B 175 1 O ILE B 175 N VAL B 151 SHEET 5 AB1 5 ILE B 200 HIS B 203 1 O VAL B 201 N VAL B 172 SHEET 1 AB2 3 ARG B 206 GLY B 213 0 SHEET 2 AB2 3 VAL B 218 ASP B 225 -1 O GLY B 220 N LEU B 212 SHEET 3 AB2 3 THR B 231 ASP B 235 -1 O LEU B 234 N VAL B 221 SHEET 1 AB3 2 MET B 258 LYS B 259 0 SHEET 2 AB3 2 TYR B 262 ILE B 263 -1 O TYR B 262 N LYS B 259 SSBOND 1 CYS A 136 CYS A 139 1555 1555 2.10 SSBOND 2 CYS B 136 CYS B 139 1555 1555 2.10 LINK OG1 THR A 47 K K A 403 1555 1555 2.78 LINK O GLU A 49 K K A 403 1555 1555 2.66 LINK OE1AGLU A 160 K K A 403 1555 1555 2.80 LINK OE1BGLU A 160 K K A 403 1555 1555 2.79 LINK OE2AGLU A 160 K K A 403 1555 1555 2.92 LINK O4 FAD A 402 K K A 403 1555 1555 2.73 LINK OG1 THR B 47 K K B 404 1555 1555 2.83 LINK O GLU B 49 K K B 404 1555 1555 2.66 LINK OE1AGLU B 160 K K B 404 1555 1555 2.70 LINK OE1BGLU B 160 K K B 404 1555 1555 2.74 LINK OE2BGLU B 160 K K B 404 1555 1555 3.09 LINK O4 FAD B 403 K K B 404 1555 1555 2.70 CISPEP 1 ARG A 93 PRO A 94 0 4.30 CISPEP 2 ARG B 93 PRO B 94 0 -1.56 SITE 1 AC1 37 ASN A 52 LEU A 120 GLY A 154 GLY A 155 SITE 2 AC1 37 ASN A 156 THR A 157 GLU A 160 HIS A 176 SITE 3 AC1 37 ARG A 177 ARG A 178 ARG A 182 GLU A 184 SITE 4 AC1 37 ILE A 243 GLY A 244 HIS A 245 TYR A 292 SITE 5 AC1 37 ARG A 293 GLN A 294 FAD A 402 HOH A 513 SITE 6 AC1 37 HOH A 515 HOH A 516 HOH A 520 HOH A 527 SITE 7 AC1 37 HOH A 538 HOH A 543 HOH A 557 HOH A 560 SITE 8 AC1 37 HOH A 582 HOH A 588 HOH A 614 HOH A 616 SITE 9 AC1 37 HOH A 618 HOH A 647 GLN B 196 ASN B 197 SITE 10 AC1 37 HOH B 625 SITE 1 AC2 38 GLY A 13 SER A 14 GLY A 15 PRO A 16 SITE 2 AC2 38 ALA A 17 THR A 36 GLY A 37 MET A 38 SITE 3 AC2 38 GLN A 39 GLY A 42 GLN A 43 LEU A 44 SITE 4 AC2 38 THR A 47 ASN A 52 HIS A 84 ILE A 85 SITE 5 AC2 38 SER A 112 THR A 113 GLY A 114 GLU A 160 SITE 6 AC2 38 HIS A 245 GLY A 285 ASP A 286 ARG A 293 SITE 7 AC2 38 GLN A 294 ALA A 295 SER A 298 NAP A 401 SITE 8 AC2 38 K A 403 HOH A 513 HOH A 519 HOH A 528 SITE 9 AC2 38 HOH A 539 HOH A 569 HOH A 578 HOH A 607 SITE 10 AC2 38 HOH A 633 TYR B 24 SITE 1 AC3 4 THR A 47 GLU A 49 GLU A 160 FAD A 402 SITE 1 AC4 3 ASP A 257 THR A 276 SER A 277 SITE 1 AC5 4 GLY A 268 HOH A 608 SER B 267 GOL B 401 SITE 1 AC6 5 SER A 267 GOL A 405 SER B 267 GLY B 268 SITE 2 AC6 5 HOH B 566 SITE 1 AC7 32 ASN B 52 LEU B 120 GLY B 154 GLY B 155 SITE 2 AC7 32 ASN B 156 THR B 157 GLU B 160 HIS B 176 SITE 3 AC7 32 ARG B 177 ARG B 178 ARG B 182 ILE B 243 SITE 4 AC7 32 GLY B 244 HIS B 245 TYR B 292 ARG B 293 SITE 5 AC7 32 GLN B 294 FAD B 403 HOH B 512 HOH B 522 SITE 6 AC7 32 HOH B 523 HOH B 526 HOH B 528 HOH B 533 SITE 7 AC7 32 HOH B 536 HOH B 537 HOH B 539 HOH B 575 SITE 8 AC7 32 HOH B 595 HOH B 611 HOH B 652 HOH B 660 SITE 1 AC8 37 TYR A 24 GLY B 13 SER B 14 GLY B 15 SITE 2 AC8 37 PRO B 16 ALA B 17 THR B 36 GLY B 37 SITE 3 AC8 37 MET B 38 GLN B 39 GLY B 42 GLN B 43 SITE 4 AC8 37 LEU B 44 THR B 47 ASN B 52 HIS B 84 SITE 5 AC8 37 ILE B 85 SER B 112 THR B 113 GLY B 114 SITE 6 AC8 37 ALA B 115 GLU B 160 HIS B 245 GLY B 285 SITE 7 AC8 37 ASP B 286 ARG B 293 GLN B 294 ALA B 295 SITE 8 AC8 37 SER B 298 NAP B 402 K B 404 HOH B 516 SITE 9 AC8 37 HOH B 517 HOH B 559 HOH B 569 HOH B 585 SITE 10 AC8 37 HOH B 598 SITE 1 AC9 4 THR B 47 GLU B 49 GLU B 160 FAD B 403 SITE 1 AD1 3 LEU B 264 LYS B 266 SER B 277 CRYST1 61.931 100.758 126.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007881 0.00000