HEADER HYDROLASE 17-MAY-17 5VTO TITLE SOLUTION STRUCTURE OF BLSM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLASTICIDIN M; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEOCHROMOGENES; SOURCE 3 ORGANISM_TAXID: 68214; SOURCE 4 GENE: AVL59_19940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOSINE, HYDROLASE, DEAMINASE, BIOSYNTHESIS EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.KANG,K.DODDAPANENI,Z.HEPPNER,Z.WU REVDAT 4 15-MAY-24 5VTO 1 REMARK REVDAT 3 14-JUN-23 5VTO 1 REMARK REVDAT 2 24-APR-19 5VTO 1 REMARK REVDAT 1 23-MAY-18 5VTO 0 JRNL AUTH M.KANG,K.DODDAPANENI,Z.HEPPNER,Z.WU JRNL TITL SOLUTION STRUCTURE OF THE NUCLEOTIDE HYDROLASE BLSM: JRNL TITL 2 IMPLICATION OF ITS SUBSTRATE SPECIFICITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227836. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 178 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 25 MM SODIUM PHOSPHATE, 2 MM REMARK 210 DTT, 25 MM SODIUM CHLORIDE, 2 MM REMARK 210 BETA-MERCAPTOETHANOL, 0.02 % REMARK 210 SODIUM AZIDE, 0.8 MM [U-15N] REMARK 210 BLASTICIDIN M, 92% H2O/8% D2O; REMARK 210 0.02 % SODIUM AZIDE, 0.8 MM [U- REMARK 210 13C; U-15N] BLASTICIDIN M, 92% REMARK 210 H2O/8% D2O; 0.8 MM [U-100% 13C; REMARK 210 U-100% 15N; U-95% 2H] REMARK 210 BLASTICIDIN M, 92% H2O/8% D2O; REMARK 210 0.8 MM [U-10% 13C; U-100% 15N] REMARK 210 BLASTICIDIN M, 92% H2O/8% D2O; REMARK 210 1.25 MM [U-15N] BLASTICIDIN M, REMARK 210 1.25 MM [U-13C; U-15N] REMARK 210 BLASTICIDIN M, 92% H2O/8% D2O; REMARK 210 0.8 MM [U-15N] BLASTICIDIN M, 92% REMARK 210 H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D HN(COCA)CB; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC; 3D 15N REMARK 210 NOESY-TROSY; 3D HMQC-NOESY-HSQC; REMARK 210 3D 15N/13C-FILTERED 13C-EDITED REMARK 210 NOESY; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASN B 229 HG1 THR B 232 1.26 REMARK 500 HE1 PHE A 130 H MET B 225 1.28 REMARK 500 HE1 TRP A 108 HB3 SER B 310 1.29 REMARK 500 HB2 PRO A 94 H GLY A 95 1.31 REMARK 500 HB2 PRO B 294 H GLY B 295 1.32 REMARK 500 HB ILE B 296 HB3 ARG B 324 1.33 REMARK 500 H MET A 25 HE1 PHE B 330 1.35 REMARK 500 O ASP B 348 H LEU B 351 1.37 REMARK 500 O ASP A 148 H LEU A 151 1.40 REMARK 500 O TYR A 128 H PHE A 130 1.41 REMARK 500 O TYR B 328 H PHE B 330 1.42 REMARK 500 O PHE A 50 H LEU A 55 1.47 REMARK 500 O THR B 272 H GLU B 275 1.47 REMARK 500 O THR A 72 H GLU A 75 1.48 REMARK 500 O PHE B 250 H LEU B 255 1.51 REMARK 500 O ARG B 263 H TRP B 266 1.55 REMARK 500 O PHE B 219 O VAL B 291 1.86 REMARK 500 O PHE A 19 O VAL A 91 1.87 REMARK 500 O LEU B 220 OD1 ASN B 259 2.04 REMARK 500 OG SER B 217 OE2 GLU B 256 2.07 REMARK 500 OG SER A 17 OE2 GLU A 56 2.10 REMARK 500 O LEU A 20 OD1 ASN A 59 2.11 REMARK 500 O ARG A 161 OD2 ASP A 165 2.13 REMARK 500 O ARG B 361 OD2 ASP B 365 2.15 REMARK 500 O PHE A 24 N GLY A 26 2.16 REMARK 500 O TYR B 328 N PHE B 330 2.16 REMARK 500 O THR A 102 N GLU A 105 2.17 REMARK 500 O GLU B 264 N GLN B 269 2.17 REMARK 500 O PHE B 224 N GLY B 226 2.18 REMARK 500 O TYR A 128 N PHE A 130 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 60.99 -114.39 REMARK 500 1 VAL A 15 113.24 -24.93 REMARK 500 1 PRO A 23 4.91 -65.70 REMARK 500 1 PHE A 24 -142.53 17.13 REMARK 500 1 MET A 25 -53.16 -10.68 REMARK 500 1 PRO A 30 71.58 -44.21 REMARK 500 1 GLU A 31 45.22 83.02 REMARK 500 1 SER A 34 42.26 -171.46 REMARK 500 1 ASN A 59 -83.96 77.54 REMARK 500 1 ALA A 60 165.57 -22.99 REMARK 500 1 ARG A 62 -97.81 6.72 REMARK 500 1 ARG A 63 -79.66 -22.98 REMARK 500 1 ALA A 68 56.03 -163.36 REMARK 500 1 GLN A 69 -163.75 -46.96 REMARK 500 1 LEU A 71 -159.08 -45.40 REMARK 500 1 GLU A 74 2.17 -62.65 REMARK 500 1 GLU A 75 -59.48 -130.22 REMARK 500 1 ALA A 92 -167.69 -127.12 REMARK 500 1 PRO A 94 -97.89 -38.60 REMARK 500 1 ILE A 96 149.62 -30.97 REMARK 500 1 PRO A 97 159.10 -46.74 REMARK 500 1 PRO A 98 81.22 -45.09 REMARK 500 1 SER A 99 106.79 -17.87 REMARK 500 1 THR A 102 -76.73 -55.61 REMARK 500 1 HIS A 103 -67.31 -22.89 REMARK 500 1 ASP A 113 -15.63 90.18 REMARK 500 1 PRO A 115 157.42 -38.50 REMARK 500 1 VAL A 117 106.93 -165.41 REMARK 500 1 LEU A 120 132.41 -37.98 REMARK 500 1 GLU A 122 92.66 -9.55 REMARK 500 1 GLU A 125 -32.33 -37.34 REMARK 500 1 TYR A 128 -81.13 -55.11 REMARK 500 1 PHE A 130 -83.43 -30.81 REMARK 500 1 ALA A 140 80.95 -50.36 REMARK 500 1 ASP A 148 104.75 -170.57 REMARK 500 1 PRO A 170 158.17 -40.17 REMARK 500 1 ALA A 172 -128.56 -83.40 REMARK 500 1 ALA B 213 59.72 -114.93 REMARK 500 1 VAL B 215 115.87 -25.98 REMARK 500 1 PRO B 223 4.66 -66.84 REMARK 500 1 PHE B 224 -140.04 16.69 REMARK 500 1 MET B 225 -51.79 -11.92 REMARK 500 1 PRO B 230 71.95 -42.25 REMARK 500 1 GLU B 231 44.65 82.34 REMARK 500 1 SER B 234 42.29 -172.66 REMARK 500 1 ASN B 259 -82.03 76.10 REMARK 500 1 ALA B 260 165.48 -23.60 REMARK 500 1 ARG B 262 -95.00 4.73 REMARK 500 1 ARG B 263 -80.89 -25.10 REMARK 500 1 ALA B 268 56.54 -162.33 REMARK 500 REMARK 500 THIS ENTRY HAS 1115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30295 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF BLSM DBREF1 5VTO A 16 174 UNP A0A1B1BCS8_9ACTN DBREF2 5VTO A A0A1B1BCS8 2 160 DBREF1 5VTO B 216 374 UNP A0A1B1BCS8_9ACTN DBREF2 5VTO B A0A1B1BCS8 2 160 SEQADV 5VTO LYS A 12 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO ALA A 13 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO GLY A 14 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO VAL A 15 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO LYS B 212 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO ALA B 213 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO GLY B 214 UNP A0A1B1BCS EXPRESSION TAG SEQADV 5VTO VAL B 215 UNP A0A1B1BCS EXPRESSION TAG SEQRES 1 A 163 LYS ALA GLY VAL ARG SER VAL PHE LEU ALA GLY PRO PHE SEQRES 2 A 163 MET GLY LEU VAL ASN PRO GLU THR ASN SER MET PRO SER SEQRES 3 A 163 ALA GLU GLN LEU PRO PHE LEU THR LEU ILE GLU HIS PHE SEQRES 4 A 163 GLU LYS GLN GLY LEU GLU VAL PHE ASN ALA HIS ARG ARG SEQRES 5 A 163 GLU ALA TRP GLY ALA GLN VAL LEU THR PRO GLU GLU CYS SEQRES 6 A 163 THR PRO LEU ASP GLN LEU GLU ILE ARG LYS ALA ASP VAL SEQRES 7 A 163 PHE VAL ALA ILE PRO GLY ILE PRO PRO SER PRO GLY THR SEQRES 8 A 163 HIS VAL GLU ILE GLY TRP ALA SER ALA PHE ASP LYS PRO SEQRES 9 A 163 ILE VAL LEU LEU LEU GLU GLU GLY ARG GLU GLU GLU TYR SEQRES 10 A 163 GLY PHE LEU VAL ARG GLY LEU GLY THR VAL ALA ALA VAL SEQRES 11 A 163 GLU PHE VAL HIS TYR LYS ASP ILE ALA LEU ALA LYS PRO SEQRES 12 A 163 GLN ILE ASP ALA ALA ILE ARG LYS VAL VAL ASP ARG VAL SEQRES 13 A 163 ASN ASN PRO ALA ALA THR PRO SEQRES 1 B 163 LYS ALA GLY VAL ARG SER VAL PHE LEU ALA GLY PRO PHE SEQRES 2 B 163 MET GLY LEU VAL ASN PRO GLU THR ASN SER MET PRO SER SEQRES 3 B 163 ALA GLU GLN LEU PRO PHE LEU THR LEU ILE GLU HIS PHE SEQRES 4 B 163 GLU LYS GLN GLY LEU GLU VAL PHE ASN ALA HIS ARG ARG SEQRES 5 B 163 GLU ALA TRP GLY ALA GLN VAL LEU THR PRO GLU GLU CYS SEQRES 6 B 163 THR PRO LEU ASP GLN LEU GLU ILE ARG LYS ALA ASP VAL SEQRES 7 B 163 PHE VAL ALA ILE PRO GLY ILE PRO PRO SER PRO GLY THR SEQRES 8 B 163 HIS VAL GLU ILE GLY TRP ALA SER ALA PHE ASP LYS PRO SEQRES 9 B 163 ILE VAL LEU LEU LEU GLU GLU GLY ARG GLU GLU GLU TYR SEQRES 10 B 163 GLY PHE LEU VAL ARG GLY LEU GLY THR VAL ALA ALA VAL SEQRES 11 B 163 GLU PHE VAL HIS TYR LYS ASP ILE ALA LEU ALA LYS PRO SEQRES 12 B 163 GLN ILE ASP ALA ALA ILE ARG LYS VAL VAL ASP ARG VAL SEQRES 13 B 163 ASN ASN PRO ALA ALA THR PRO HELIX 1 AA1 PRO A 23 VAL A 28 1 6 HELIX 2 AA2 PRO A 36 GLY A 54 1 19 HELIX 3 AA3 HIS A 61 ALA A 68 1 8 HELIX 4 AA4 THR A 72 ALA A 87 1 16 HELIX 5 AA5 SER A 99 ASP A 113 1 15 HELIX 6 AA6 GLY A 123 GLY A 129 1 7 HELIX 7 AA7 GLY A 129 ALA A 139 1 11 HELIX 8 AA8 ASP A 148 ASN A 169 1 22 HELIX 9 AA9 PRO B 223 VAL B 228 1 6 HELIX 10 AB1 PRO B 236 GLY B 254 1 19 HELIX 11 AB2 HIS B 261 ALA B 268 1 8 HELIX 12 AB3 THR B 272 ALA B 287 1 16 HELIX 13 AB4 SER B 299 ASP B 313 1 15 HELIX 14 AB5 GLY B 323 GLY B 329 1 7 HELIX 15 AB6 GLY B 329 ALA B 339 1 11 HELIX 16 AB7 ASP B 348 ASN B 369 1 22 SHEET 1 AA1 5 PHE A 58 ASN A 59 0 SHEET 2 AA1 5 VAL A 18 LEU A 20 1 N LEU A 20 O PHE A 58 SHEET 3 AA1 5 VAL A 89 ALA A 92 1 O VAL A 89 N PHE A 19 SHEET 4 AA1 5 ILE A 116 LEU A 118 1 O VAL A 117 N ALA A 92 SHEET 5 AA1 5 VAL A 141 PHE A 143 1 O GLU A 142 N LEU A 118 SHEET 1 AA2 5 PHE B 258 ASN B 259 0 SHEET 2 AA2 5 VAL B 218 LEU B 220 1 N LEU B 220 O PHE B 258 SHEET 3 AA2 5 VAL B 289 ALA B 292 1 O VAL B 289 N PHE B 219 SHEET 4 AA2 5 ILE B 316 LEU B 318 1 O VAL B 317 N ALA B 292 SHEET 5 AA2 5 VAL B 341 PHE B 343 1 O GLU B 342 N LEU B 318 CISPEP 1 ILE A 96 PRO A 97 1 -0.12 CISPEP 2 ILE B 296 PRO B 297 1 0.68 CISPEP 3 ILE A 96 PRO A 97 2 -0.16 CISPEP 4 ILE B 296 PRO B 297 2 -0.26 CISPEP 5 ILE A 96 PRO A 97 3 -0.27 CISPEP 6 ILE B 296 PRO B 297 3 0.12 CISPEP 7 ILE A 96 PRO A 97 4 -0.29 CISPEP 8 ILE B 296 PRO B 297 4 -0.71 CISPEP 9 ILE A 96 PRO A 97 5 0.00 CISPEP 10 ILE B 296 PRO B 297 5 0.25 CISPEP 11 ILE A 96 PRO A 97 6 -0.43 CISPEP 12 ILE B 296 PRO B 297 6 -0.19 CISPEP 13 ILE A 96 PRO A 97 7 0.12 CISPEP 14 ILE B 296 PRO B 297 7 0.43 CISPEP 15 ILE A 96 PRO A 97 8 0.39 CISPEP 16 ILE B 296 PRO B 297 8 0.08 CISPEP 17 ILE A 96 PRO A 97 9 0.04 CISPEP 18 ILE B 296 PRO B 297 9 0.06 CISPEP 19 ILE A 96 PRO A 97 10 -0.14 CISPEP 20 ILE B 296 PRO B 297 10 -0.41 CISPEP 21 ILE A 96 PRO A 97 11 0.01 CISPEP 22 ILE B 296 PRO B 297 11 0.00 CISPEP 23 ILE A 96 PRO A 97 12 0.06 CISPEP 24 ILE B 296 PRO B 297 12 0.33 CISPEP 25 ILE A 96 PRO A 97 13 -0.57 CISPEP 26 ILE B 296 PRO B 297 13 -0.74 CISPEP 27 ILE A 96 PRO A 97 14 0.30 CISPEP 28 ILE B 296 PRO B 297 14 0.04 CISPEP 29 ILE A 96 PRO A 97 15 -0.45 CISPEP 30 ILE B 296 PRO B 297 15 0.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1