HEADER OXIDOREDUCTASE 21-MAY-17 5VW3 TITLE NADP+ SOAK OF Y316S MUTANT OF CORN ROOT FERREDOXIN:NADP+ REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.18.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOENZYME, HYDRIDE TRANSFER, PHOTOSYNTHESIS, ACTIVE SITE KEYWDS 2 COMPRESSION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KEAN,R.A.CARPENTER,A.R.HALL,P.A.KARPLUS REVDAT 4 04-OCT-23 5VW3 1 REMARK REVDAT 3 27-NOV-19 5VW3 1 REMARK REVDAT 2 11-OCT-17 5VW3 1 JRNL REVDAT 1 23-AUG-17 5VW3 0 JRNL AUTH K.M.KEAN,R.A.CARPENTER,V.PANDINI,G.ZANETTI,A.R.HALL,R.FABER, JRNL AUTH 2 A.ALIVERTI,P.A.KARPLUS JRNL TITL HIGH-RESOLUTION STUDIES OF HYDRIDE TRANSFER IN THE JRNL TITL 2 FERREDOXIN:NADP(+) REDUCTASE SUPERFAMILY. JRNL REF FEBS J. V. 284 3302 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28783258 JRNL DOI 10.1111/FEBS.14190 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 65751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 6645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.9651 - 4.5140 1.00 2232 249 0.1765 0.1896 REMARK 3 2 4.5140 - 3.5832 1.00 2136 228 0.1108 0.1193 REMARK 3 3 3.5832 - 3.1303 1.00 2058 239 0.1040 0.1289 REMARK 3 4 3.1303 - 2.8441 1.00 2056 233 0.1082 0.1472 REMARK 3 5 2.8441 - 2.6403 1.00 2049 230 0.1018 0.1295 REMARK 3 6 2.6403 - 2.4846 1.00 2065 200 0.0956 0.1452 REMARK 3 7 2.4846 - 2.3602 1.00 2037 219 0.0962 0.1377 REMARK 3 8 2.3602 - 2.2575 1.00 2020 217 0.0966 0.1437 REMARK 3 9 2.2575 - 2.1706 1.00 2050 218 0.0872 0.1330 REMARK 3 10 2.1706 - 2.0957 1.00 1994 253 0.0859 0.1215 REMARK 3 11 2.0957 - 2.0301 1.00 2000 226 0.0850 0.1263 REMARK 3 12 2.0301 - 1.9721 1.00 2053 211 0.0832 0.1232 REMARK 3 13 1.9721 - 1.9202 1.00 2015 222 0.0865 0.1269 REMARK 3 14 1.9202 - 1.8733 1.00 2016 211 0.0920 0.1216 REMARK 3 15 1.8733 - 1.8307 1.00 1997 230 0.0947 0.1353 REMARK 3 16 1.8307 - 1.7918 1.00 1958 256 0.0896 0.1358 REMARK 3 17 1.7918 - 1.7559 0.99 1985 236 0.0933 0.1572 REMARK 3 18 1.7559 - 1.7228 0.99 1943 238 0.0918 0.1329 REMARK 3 19 1.7228 - 1.6920 0.99 1944 240 0.0888 0.1452 REMARK 3 20 1.6920 - 1.6633 0.98 1994 209 0.0979 0.1705 REMARK 3 21 1.6633 - 1.6365 0.98 1937 219 0.0985 0.1540 REMARK 3 22 1.6365 - 1.6113 0.98 1999 214 0.1060 0.1657 REMARK 3 23 1.6113 - 1.5876 0.97 1891 210 0.1099 0.1698 REMARK 3 24 1.5876 - 1.5653 0.94 1927 204 0.1177 0.1624 REMARK 3 25 1.5653 - 1.5441 0.92 1803 200 0.1120 0.1647 REMARK 3 26 1.5441 - 1.5241 0.91 1853 183 0.1101 0.1632 REMARK 3 27 1.5241 - 1.5050 0.91 1801 183 0.1207 0.1831 REMARK 3 28 1.5050 - 1.4869 0.91 1856 217 0.1320 0.1836 REMARK 3 29 1.4869 - 1.4696 0.90 1730 224 0.1368 0.1934 REMARK 3 30 1.4696 - 1.4531 0.87 1707 226 0.1435 0.1929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2766 REMARK 3 ANGLE : 1.209 3813 REMARK 3 CHIRALITY : 0.079 397 REMARK 3 PLANARITY : 0.006 486 REMARK 3 DIHEDRAL : 18.883 1075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOMS C5D, C4D, O4D, C3D, O3D, C2D, O2D, N1N, AND C1D OF NAP REMARK 3 MODELED AS 0.60 (A) AND 0.40 (B) OCCUPANCY WHERE ALTERNATE REMARK 3 CONFORMATION IS VISIBLE. REMARK 3 ALL OTHER ATOMS MODELED AS 1.0 (A) AND 0.0 (B) TO REFLECT ONLY ONE REMARK 3 VISIBLE CONFORMATION FOR THE REMAINDER OF NAP. REMARK 4 REMARK 4 5VW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3LO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-24% PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6-7), 0.18-0.22 M MAGNESIUM ACETATE, 100 MM REMARK 280 NICOTINAMIDE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.02800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.51400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.51400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.02800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 125 CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 263 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 29 O HOH A 507 1.58 REMARK 500 HZ2 LYS A 224 O HOH A 511 1.58 REMARK 500 OD1 ASP A 285 O HOH A 501 1.94 REMARK 500 O HOH A 780 O HOH A 928 1.97 REMARK 500 O HOH A 561 O HOH A 883 2.01 REMARK 500 O HOH A 779 O HOH A 866 2.02 REMARK 500 O HOH A 505 O HOH A 508 2.08 REMARK 500 OD1 ASP A 285 O HOH A 502 2.12 REMARK 500 O ACT A 404 O HOH A 503 2.13 REMARK 500 O HOH A 717 O HOH A 846 2.15 REMARK 500 O HOH A 519 O HOH A 779 2.15 REMARK 500 OD1 ASN A 131 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH11 ARG A 107 O HOH A 530 5565 1.55 REMARK 500 O HOH A 786 O HOH A 933 5665 1.87 REMARK 500 O HOH A 933 O HOH A 962 5565 1.94 REMARK 500 O HOH A 846 O HOH A 883 5565 2.02 REMARK 500 O HOH A 512 O HOH A 868 4555 2.12 REMARK 500 O HOH A 814 O HOH A 949 4455 2.13 REMARK 500 O HOH A 970 O HOH A 986 5665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 81.39 -156.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 985 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 8.07 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAP A 403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 587 O REMARK 620 2 HOH A 600 O 91.2 REMARK 620 3 HOH A 722 O 174.2 84.9 REMARK 620 4 HOH A 819 O 87.0 89.9 88.7 REMARK 620 5 HOH A 913 O 91.3 177.1 92.5 88.7 REMARK 620 6 HOH A 917 O 84.5 93.7 100.1 170.8 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VW2 RELATED DB: PDB REMARK 900 RELATED ID: 5VW4 RELATED DB: PDB REMARK 900 RELATED ID: 5VW5 RELATED DB: PDB REMARK 900 RELATED ID: 5VW6 RELATED DB: PDB REMARK 900 RELATED ID: 5VW8 RELATED DB: PDB REMARK 900 RELATED ID: 5VW7 RELATED DB: PDB REMARK 900 RELATED ID: 5VWB RELATED DB: PDB REMARK 900 RELATED ID: 5VW9 RELATED DB: PDB REMARK 900 RELATED ID: 5VWA RELATED DB: PDB DBREF 5VW3 A 1 316 UNP Q41736 Q41736_MAIZE 12 327 SEQADV 5VW3 SER A 316 UNP Q41736 TYR 327 ENGINEERED MUTATION SEQRES 1 A 316 SER VAL GLN GLN ALA SER ARG SER LYS VAL SER VAL ALA SEQRES 2 A 316 PRO LEU HIS LEU GLU SER ALA LYS GLU PRO PRO LEU ASN SEQRES 3 A 316 THR TYR LYS PRO LYS GLU PRO PHE THR ALA THR ILE VAL SEQRES 4 A 316 SER VAL GLU SER LEU VAL GLY PRO LYS ALA PRO GLY GLU SEQRES 5 A 316 THR CYS HIS ILE VAL ILE ASP HIS GLY GLY ASN VAL PRO SEQRES 6 A 316 TYR TRP GLU GLY GLN SER TYR GLY VAL ILE PRO PRO GLY SEQRES 7 A 316 GLU ASN PRO LYS LYS PRO GLY ALA PRO GLN ASN VAL ARG SEQRES 8 A 316 LEU TYR SER ILE ALA SER THR ARG TYR GLY ASP ASN PHE SEQRES 9 A 316 ASP GLY ARG THR GLY SER LEU CYS VAL ARG ARG ALA VAL SEQRES 10 A 316 TYR TYR ASP PRO GLU THR GLY LYS GLU ASP PRO SER LYS SEQRES 11 A 316 ASN GLY VAL CYS SER ASN PHE LEU CYS ASN SER LYS PRO SEQRES 12 A 316 GLY ASP LYS ILE GLN LEU THR GLY PRO SER GLY LYS ILE SEQRES 13 A 316 MET LEU LEU PRO GLU GLU ASP PRO ASN ALA THR HIS ILE SEQRES 14 A 316 MET ILE ALA THR GLY THR GLY VAL ALA PRO PHE ARG GLY SEQRES 15 A 316 TYR LEU ARG ARG MET PHE MET GLU ASP VAL PRO ASN TYR SEQRES 16 A 316 ARG PHE GLY GLY LEU ALA TRP LEU PHE LEU GLY VAL ALA SEQRES 17 A 316 ASN SER ASP SER LEU LEU TYR ASP GLU GLU PHE THR SER SEQRES 18 A 316 TYR LEU LYS GLN TYR PRO ASP ASN PHE ARG TYR ASP LYS SEQRES 19 A 316 ALA LEU SER ARG GLU GLN LYS ASN ARG SER GLY GLY LYS SEQRES 20 A 316 MET TYR VAL GLN ASP LYS ILE GLU GLU TYR SER ASP GLU SEQRES 21 A 316 ILE PHE LYS LEU LEU ASP GLY GLY ALA HIS ILE TYR PHE SEQRES 22 A 316 CYS GLY LEU LYS GLY MET MET PRO GLY ILE GLN ASP THR SEQRES 23 A 316 LEU LYS LYS VAL ALA GLU ARG ARG GLY GLU SER TRP ASP SEQRES 24 A 316 GLN LYS LEU ALA GLN LEU LYS LYS ASN LYS GLN TRP HIS SEQRES 25 A 316 VAL GLU VAL SER HET MG A 401 1 HET FAD A 402 84 HET NAP A 403 146 HET ACT A 404 7 HETNAM MG MAGNESIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ACT ACETATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 MG MG 2+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *491(H2 O) HELIX 1 AA1 PRO A 14 SER A 19 5 6 HELIX 2 AA2 ASP A 127 ASN A 131 5 5 HELIX 3 AA3 GLY A 132 ASN A 140 1 9 HELIX 4 AA4 VAL A 177 MET A 189 1 13 HELIX 5 AA5 ASN A 209 LEU A 213 5 5 HELIX 6 AA6 TYR A 215 TYR A 226 1 12 HELIX 7 AA7 TYR A 249 TYR A 257 1 9 HELIX 8 AA8 TYR A 257 GLY A 267 1 11 HELIX 9 AA9 GLY A 278 GLY A 295 1 18 HELIX 10 AB1 SER A 297 ASN A 308 1 12 SHEET 1 AA1 2 VAL A 10 SER A 11 0 SHEET 2 AA1 2 GLU A 190 ASP A 191 1 O ASP A 191 N VAL A 10 SHEET 1 AA2 6 ARG A 91 SER A 94 0 SHEET 2 AA2 6 SER A 71 ILE A 75 -1 N TYR A 72 O TYR A 93 SHEET 3 AA2 6 LYS A 146 SER A 153 -1 O SER A 153 N SER A 71 SHEET 4 AA2 6 PHE A 34 SER A 43 -1 N PHE A 34 O LEU A 149 SHEET 5 AA2 6 THR A 53 ASP A 59 -1 O ASP A 59 N THR A 37 SHEET 6 AA2 6 THR A 108 ARG A 114 -1 O GLY A 109 N ILE A 58 SHEET 1 AA3 2 GLU A 79 ASN A 80 0 SHEET 2 AA3 2 LYS A 83 PRO A 87 -1 O ALA A 86 N ASN A 80 SHEET 1 AA4 5 PHE A 230 LEU A 236 0 SHEET 2 AA4 5 LEU A 200 VAL A 207 1 N LEU A 205 O ALA A 235 SHEET 3 AA4 5 THR A 167 THR A 173 1 N MET A 170 O PHE A 204 SHEET 4 AA4 5 HIS A 270 LEU A 276 1 O HIS A 270 N ILE A 169 SHEET 5 AA4 5 TRP A 311 SER A 316 1 O GLU A 314 N PHE A 273 SSBOND 1 CYS A 54 CYS A 139 1555 1555 2.05 LINK MG MG A 401 O HOH A 587 1555 1555 2.01 LINK MG MG A 401 O HOH A 600 1555 1555 2.09 LINK MG MG A 401 O HOH A 722 1555 1555 2.03 LINK MG MG A 401 O HOH A 819 1555 1555 2.11 LINK MG MG A 401 O HOH A 913 1555 1555 2.05 LINK MG MG A 401 O HOH A 917 1555 1555 2.01 CISPEP 1 ALA A 13 PRO A 14 0 -1.57 CISPEP 2 GLY A 151 PRO A 152 0 -0.78 SITE 1 AC1 6 HOH A 587 HOH A 600 HOH A 722 HOH A 819 SITE 2 AC1 6 HOH A 913 HOH A 917 SITE 1 AC2 31 ARG A 91 LEU A 92 TYR A 93 SER A 94 SITE 2 AC2 31 CYS A 112 VAL A 113 ARG A 114 ALA A 116 SITE 3 AC2 31 TYR A 118 LYS A 130 ASN A 131 GLY A 132 SITE 4 AC2 31 VAL A 133 CYS A 134 SER A 135 THR A 175 SITE 5 AC2 31 SER A 316 NAP A 403 HOH A 553 HOH A 554 SITE 6 AC2 31 HOH A 556 HOH A 557 HOH A 592 HOH A 612 SITE 7 AC2 31 HOH A 653 HOH A 678 HOH A 743 HOH A 756 SITE 8 AC2 31 HOH A 761 HOH A 781 HOH A 793 SITE 1 AC3 32 SER A 94 ARG A 114 THR A 173 GLY A 174 SITE 2 AC3 32 THR A 175 GLY A 176 GLY A 206 VAL A 207 SITE 3 AC3 32 ALA A 208 SER A 237 ARG A 238 LYS A 247 SITE 4 AC3 32 TYR A 249 GLN A 251 CYS A 274 GLY A 275 SITE 5 AC3 32 LEU A 276 GLY A 278 MET A 279 GLU A 314 SITE 6 AC3 32 VAL A 315 SER A 316 FAD A 402 HOH A 526 SITE 7 AC3 32 HOH A 528 HOH A 549 HOH A 551 HOH A 585 SITE 8 AC3 32 HOH A 675 HOH A 682 HOH A 733 HOH A 753 SITE 1 AC4 9 LEU A 265 ASP A 266 GLN A 304 LEU A 305 SITE 2 AC4 9 ASN A 308 GLN A 310 HOH A 503 HOH A 676 SITE 3 AC4 9 HOH A 899 CRYST1 58.813 58.813 187.542 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017003 0.009817 0.000000 0.00000 SCALE2 0.000000 0.019633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005332 0.00000