HEADER OXIDOREDUCTASE 21-MAY-17 5VW8 TITLE NADP+ SOAK OF Y316S MUTANT OF CORN ROOT FERREDOXIN:NADP+ REDUCTASE IN TITLE 2 ALTERNATE SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.18.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOENZYME, HYDRIDE TRANSFER, PHOTOSYNTHESIS, ACTIVE SITE KEYWDS 2 COMPRESSION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KEAN,R.A.CARPENTER,A.R.HALL,P.A.KARPLUS REVDAT 5 04-OCT-23 5VW8 1 REMARK LINK REVDAT 4 27-NOV-19 5VW8 1 REMARK REVDAT 3 11-OCT-17 5VW8 1 JRNL REVDAT 2 27-SEP-17 5VW8 1 REMARK REVDAT 1 23-AUG-17 5VW8 0 JRNL AUTH K.M.KEAN,R.A.CARPENTER,V.PANDINI,G.ZANETTI,A.R.HALL,R.FABER, JRNL AUTH 2 A.ALIVERTI,P.A.KARPLUS JRNL TITL HIGH-RESOLUTION STUDIES OF HYDRIDE TRANSFER IN THE JRNL TITL 2 FERREDOXIN:NADP(+) REDUCTASE SUPERFAMILY. JRNL REF FEBS J. V. 284 3302 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28783258 JRNL DOI 10.1111/FEBS.14190 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3040 - 5.2829 0.98 1368 164 0.1858 0.1850 REMARK 3 2 5.2829 - 4.1948 1.00 1318 134 0.1457 0.1817 REMARK 3 3 4.1948 - 3.6650 1.00 1292 139 0.1678 0.2161 REMARK 3 4 3.6650 - 3.3301 1.00 1318 141 0.1822 0.2446 REMARK 3 5 3.3301 - 3.0915 1.00 1242 151 0.1862 0.2076 REMARK 3 6 3.0915 - 2.9093 1.00 1282 135 0.1827 0.2005 REMARK 3 7 2.9093 - 2.7636 1.00 1264 154 0.1655 0.1909 REMARK 3 8 2.7636 - 2.6433 1.00 1261 135 0.1642 0.2128 REMARK 3 9 2.6433 - 2.5416 1.00 1250 133 0.1625 0.2225 REMARK 3 10 2.5416 - 2.4539 1.00 1261 128 0.1616 0.2204 REMARK 3 11 2.4539 - 2.3772 1.00 1277 127 0.1521 0.2163 REMARK 3 12 2.3772 - 2.3093 1.00 1250 135 0.1499 0.1920 REMARK 3 13 2.3093 - 2.2485 0.99 1245 138 0.1504 0.1846 REMARK 3 14 2.2485 - 2.1936 1.00 1237 140 0.1605 0.1911 REMARK 3 15 2.1936 - 2.1438 1.00 1255 143 0.1566 0.1943 REMARK 3 16 2.1438 - 2.0981 1.00 1206 145 0.1531 0.1848 REMARK 3 17 2.0981 - 2.0562 1.00 1269 124 0.1573 0.2059 REMARK 3 18 2.0562 - 2.0174 1.00 1213 160 0.1714 0.2290 REMARK 3 19 2.0174 - 1.9813 1.00 1249 125 0.1737 0.2078 REMARK 3 20 1.9813 - 1.9478 1.00 1233 132 0.1855 0.2106 REMARK 3 21 1.9478 - 1.9163 1.00 1250 136 0.1770 0.2772 REMARK 3 22 1.9163 - 1.8869 1.00 1216 134 0.2125 0.2133 REMARK 3 23 1.8869 - 1.8591 1.00 1261 133 0.2371 0.2780 REMARK 3 24 1.8591 - 1.8329 1.00 1204 141 0.2514 0.3186 REMARK 3 25 1.8329 - 1.8081 0.99 1242 157 0.2853 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2714 REMARK 3 ANGLE : 1.272 3723 REMARK 3 CHIRALITY : 0.062 384 REMARK 3 PLANARITY : 0.007 472 REMARK 3 DIHEDRAL : 18.258 1629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.4028 -25.4030 16.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.1737 REMARK 3 T33: 0.1583 T12: -0.0767 REMARK 3 T13: 0.0492 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.0472 L22: 0.9732 REMARK 3 L33: 1.4343 L12: 0.1062 REMARK 3 L13: 0.3069 L23: -0.2299 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: -0.0644 S13: -0.1157 REMARK 3 S21: -0.1263 S22: 0.0127 S23: -0.1060 REMARK 3 S31: 0.0438 S32: 0.1038 S33: 0.0824 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35032 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3LO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-24% PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6-7), 0.18-0.22 M MAGNESIUM ACETATE, 100 MM REMARK 280 NICOTINAMIDE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.67867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.35733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.35733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.67867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 263 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 787 O HOH A 797 2.00 REMARK 500 NH2 ARG A 114 O HOH A 501 2.02 REMARK 500 O HOH A 744 O HOH A 774 2.04 REMARK 500 O HOH A 547 O HOH A 762 2.12 REMARK 500 O HOH A 568 O HOH A 736 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 73.65 -167.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 794 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 795 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 7.03 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAP A 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 560 O REMARK 620 2 HOH A 563 O 78.9 REMARK 620 3 HOH A 666 O 90.2 154.7 REMARK 620 4 HOH A 716 O 92.4 86.4 71.2 REMARK 620 5 HOH A 751 O 168.9 96.3 98.0 97.4 REMARK 620 6 HOH A 761 O 87.1 110.0 91.9 163.1 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VW3 RELATED DB: PDB REMARK 900 RELATED ID: 5VW2 RELATED DB: PDB REMARK 900 RELATED ID: 5VW4 RELATED DB: PDB REMARK 900 RELATED ID: 5VW5 RELATED DB: PDB REMARK 900 RELATED ID: 5VW6 RELATED DB: PDB REMARK 900 RELATED ID: 5VW7 RELATED DB: PDB REMARK 900 RELATED ID: 5VWB RELATED DB: PDB REMARK 900 RELATED ID: 5VW9 RELATED DB: PDB REMARK 900 RELATED ID: 5VWA RELATED DB: PDB DBREF 5VW8 A 1 316 UNP Q41736 Q41736_MAIZE 12 327 SEQADV 5VW8 SER A 316 UNP Q41736 TYR 327 ENGINEERED MUTATION SEQRES 1 A 316 SER VAL GLN GLN ALA SER ARG SER LYS VAL SER VAL ALA SEQRES 2 A 316 PRO LEU HIS LEU GLU SER ALA LYS GLU PRO PRO LEU ASN SEQRES 3 A 316 THR TYR LYS PRO LYS GLU PRO PHE THR ALA THR ILE VAL SEQRES 4 A 316 SER VAL GLU SER LEU VAL GLY PRO LYS ALA PRO GLY GLU SEQRES 5 A 316 THR CYS HIS ILE VAL ILE ASP HIS GLY GLY ASN VAL PRO SEQRES 6 A 316 TYR TRP GLU GLY GLN SER TYR GLY VAL ILE PRO PRO GLY SEQRES 7 A 316 GLU ASN PRO LYS LYS PRO GLY ALA PRO GLN ASN VAL ARG SEQRES 8 A 316 LEU TYR SER ILE ALA SER THR ARG TYR GLY ASP ASN PHE SEQRES 9 A 316 ASP GLY ARG THR GLY SER LEU CYS VAL ARG ARG ALA VAL SEQRES 10 A 316 TYR TYR ASP PRO GLU THR GLY LYS GLU ASP PRO SER LYS SEQRES 11 A 316 ASN GLY VAL CYS SER ASN PHE LEU CYS ASN SER LYS PRO SEQRES 12 A 316 GLY ASP LYS ILE GLN LEU THR GLY PRO SER GLY LYS ILE SEQRES 13 A 316 MET LEU LEU PRO GLU GLU ASP PRO ASN ALA THR HIS ILE SEQRES 14 A 316 MET ILE ALA THR GLY THR GLY VAL ALA PRO PHE ARG GLY SEQRES 15 A 316 TYR LEU ARG ARG MET PHE MET GLU ASP VAL PRO ASN TYR SEQRES 16 A 316 ARG PHE GLY GLY LEU ALA TRP LEU PHE LEU GLY VAL ALA SEQRES 17 A 316 ASN SER ASP SER LEU LEU TYR ASP GLU GLU PHE THR SER SEQRES 18 A 316 TYR LEU LYS GLN TYR PRO ASP ASN PHE ARG TYR ASP LYS SEQRES 19 A 316 ALA LEU SER ARG GLU GLN LYS ASN ARG SER GLY GLY LYS SEQRES 20 A 316 MET TYR VAL GLN ASP LYS ILE GLU GLU TYR SER ASP GLU SEQRES 21 A 316 ILE PHE LYS LEU LEU ASP GLY GLY ALA HIS ILE TYR PHE SEQRES 22 A 316 CYS GLY LEU LYS GLY MET MET PRO GLY ILE GLN ASP THR SEQRES 23 A 316 LEU LYS LYS VAL ALA GLU ARG ARG GLY GLU SER TRP ASP SEQRES 24 A 316 GLN LYS LEU ALA GLN LEU LYS LYS ASN LYS GLN TRP HIS SEQRES 25 A 316 VAL GLU VAL SER HET MG A 401 1 HET NAP A 402 146 HET FAD A 403 84 HETNAM MG MAGNESIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 MG MG 2+ FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *297(H2 O) HELIX 1 AA1 PRO A 14 SER A 19 5 6 HELIX 2 AA2 ASP A 127 ASN A 131 5 5 HELIX 3 AA3 GLY A 132 ASN A 140 1 9 HELIX 4 AA4 VAL A 177 MET A 189 1 13 HELIX 5 AA5 ASN A 209 LEU A 213 5 5 HELIX 6 AA6 TYR A 215 TYR A 226 1 12 HELIX 7 AA7 TYR A 249 TYR A 257 1 9 HELIX 8 AA8 TYR A 257 GLY A 267 1 11 HELIX 9 AA9 GLY A 278 ARG A 294 1 17 HELIX 10 AB1 SER A 297 ASN A 308 1 12 SHEET 1 AA1 2 VAL A 10 SER A 11 0 SHEET 2 AA1 2 GLU A 190 ASP A 191 1 O ASP A 191 N VAL A 10 SHEET 1 AA2 6 ARG A 91 SER A 94 0 SHEET 2 AA2 6 SER A 71 ILE A 75 -1 N TYR A 72 O TYR A 93 SHEET 3 AA2 6 LYS A 146 SER A 153 -1 O SER A 153 N SER A 71 SHEET 4 AA2 6 PHE A 34 SER A 43 -1 N PHE A 34 O LEU A 149 SHEET 5 AA2 6 THR A 53 ASP A 59 -1 O VAL A 57 N VAL A 39 SHEET 6 AA2 6 THR A 108 ARG A 114 -1 O GLY A 109 N ILE A 58 SHEET 1 AA3 2 GLU A 79 ASN A 80 0 SHEET 2 AA3 2 LYS A 83 PRO A 87 -1 O ALA A 86 N ASN A 80 SHEET 1 AA4 5 PHE A 230 LEU A 236 0 SHEET 2 AA4 5 LEU A 200 VAL A 207 1 N LEU A 205 O ALA A 235 SHEET 3 AA4 5 THR A 167 THR A 173 1 N MET A 170 O PHE A 204 SHEET 4 AA4 5 HIS A 270 LEU A 276 1 O HIS A 270 N ILE A 169 SHEET 5 AA4 5 TRP A 311 SER A 316 1 O GLU A 314 N PHE A 273 SSBOND 1 CYS A 54 CYS A 139 1555 1555 2.02 LINK MG MG A 401 O HOH A 560 1555 1555 2.03 LINK MG MG A 401 O HOH A 563 1555 1555 2.19 LINK MG MG A 401 O HOH A 666 1555 1555 1.98 LINK MG MG A 401 O HOH A 716 1555 1555 2.04 LINK MG MG A 401 O HOH A 751 1555 1555 2.18 LINK MG MG A 401 O HOH A 761 1555 1555 2.15 CISPEP 1 ALA A 13 PRO A 14 0 -1.16 CISPEP 2 GLY A 151 PRO A 152 0 0.06 SITE 1 AC1 6 HOH A 560 HOH A 563 HOH A 666 HOH A 716 SITE 2 AC1 6 HOH A 751 HOH A 761 SITE 1 AC2 33 SER A 94 ARG A 114 THR A 173 GLY A 174 SITE 2 AC2 33 THR A 175 GLY A 176 GLY A 206 VAL A 207 SITE 3 AC2 33 ALA A 208 SER A 237 ARG A 238 LYS A 247 SITE 4 AC2 33 TYR A 249 GLN A 251 CYS A 274 GLY A 275 SITE 5 AC2 33 LEU A 276 GLY A 278 MET A 279 GLU A 314 SITE 6 AC2 33 SER A 316 FAD A 403 HOH A 501 HOH A 506 SITE 7 AC2 33 HOH A 508 HOH A 559 HOH A 569 HOH A 580 SITE 8 AC2 33 HOH A 619 HOH A 623 HOH A 624 HOH A 643 SITE 9 AC2 33 HOH A 645 SITE 1 AC3 33 ARG A 91 LEU A 92 TYR A 93 SER A 94 SITE 2 AC3 33 CYS A 112 VAL A 113 ARG A 114 ALA A 116 SITE 3 AC3 33 TYR A 118 LYS A 130 ASN A 131 GLY A 132 SITE 4 AC3 33 VAL A 133 CYS A 134 SER A 135 THR A 175 SITE 5 AC3 33 GLY A 295 GLU A 296 SER A 297 ASP A 299 SITE 6 AC3 33 SER A 316 NAP A 402 HOH A 527 HOH A 536 SITE 7 AC3 33 HOH A 561 HOH A 564 HOH A 566 HOH A 568 SITE 8 AC3 33 HOH A 571 HOH A 581 HOH A 692 HOH A 705 SITE 9 AC3 33 HOH A 720 CRYST1 58.867 58.867 185.036 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016988 0.009808 0.000000 0.00000 SCALE2 0.000000 0.019616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005404 0.00000