HEADER STRUCTURAL PROTEIN 22-MAY-17 5VWK TITLE CRYSTAL STRUCTURE OF HUMAN SCRIBBLE PDZ1:BETA-PIX COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SCRIBBLE HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 700-816; COMPND 5 SYNONYM: HSCRIB,PROTEIN LAP4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-PIX; COMPND 9 CHAIN: E, F, G, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCRIB, CRIB1, KIAA0147, LAP4, SCRB1, VARTUL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS POLARITY, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.B.LIM,M.KVANSAKUL REVDAT 4 04-OCT-23 5VWK 1 REMARK REVDAT 3 01-JAN-20 5VWK 1 REMARK REVDAT 2 27-DEC-17 5VWK 1 JRNL REVDAT 1 08-NOV-17 5VWK 0 JRNL AUTH K.Y.B.LIM,N.J.GODDE,P.O.HUMBERT,M.KVANSAKUL JRNL TITL STRUCTURAL BASIS FOR THE DIFFERENTIAL INTERACTION OF JRNL TITL 2 SCRIBBLE PDZ DOMAINS WITH THE GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 3 FACTOR BETA-PIX. JRNL REF J. BIOL. CHEM. V. 292 20425 2017 JRNL REFN ESSN 1083-351X JRNL PMID 29061852 JRNL DOI 10.1074/JBC.M117.799452 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 26411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3620 - 4.8852 0.91 2833 160 0.2177 0.2835 REMARK 3 2 4.8852 - 3.8787 0.95 2797 138 0.1753 0.1955 REMARK 3 3 3.8787 - 3.3888 0.97 2799 144 0.2002 0.2209 REMARK 3 4 3.3888 - 3.0791 0.97 2799 123 0.2186 0.2533 REMARK 3 5 3.0791 - 2.8585 0.98 2791 127 0.2389 0.2619 REMARK 3 6 2.8585 - 2.6900 0.98 2770 164 0.2502 0.2828 REMARK 3 7 2.6900 - 2.5553 0.98 2775 147 0.2661 0.3003 REMARK 3 8 2.5553 - 2.4441 0.99 2766 150 0.2794 0.3108 REMARK 3 9 2.4441 - 2.3500 0.99 2787 141 0.2984 0.3395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3379 REMARK 3 ANGLE : 0.656 4566 REMARK 3 CHIRALITY : 0.048 504 REMARK 3 PLANARITY : 0.004 600 REMARK 3 DIHEDRAL : 19.482 1996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.09 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.73800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W4F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.09M LITHIUM SULFATE AND 0.1M REMARK 280 TRISODIUM CITRATE-CITRIC ACID PH5.09, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.48150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.38000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.22225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.38000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.74075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.38000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.38000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 167.22225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.38000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.38000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.74075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.48150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 695 REMARK 465 PRO A 696 REMARK 465 LEU A 697 REMARK 465 GLY A 698 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 ALA A 701 REMARK 465 PRO A 702 REMARK 465 SER A 703 REMARK 465 VAL A 704 REMARK 465 LYS A 705 REMARK 465 GLY A 706 REMARK 465 VAL A 707 REMARK 465 SER A 708 REMARK 465 PHE A 709 REMARK 465 ASP A 710 REMARK 465 GLN A 711 REMARK 465 ALA A 712 REMARK 465 ASN A 713 REMARK 465 MET A 816 REMARK 465 GLY B 695 REMARK 465 PRO B 696 REMARK 465 LEU B 697 REMARK 465 GLY B 698 REMARK 465 SER B 699 REMARK 465 SER B 700 REMARK 465 ALA B 701 REMARK 465 PRO B 702 REMARK 465 SER B 703 REMARK 465 VAL B 704 REMARK 465 LYS B 705 REMARK 465 GLY B 706 REMARK 465 VAL B 707 REMARK 465 SER B 708 REMARK 465 PHE B 709 REMARK 465 ASP B 710 REMARK 465 GLN B 711 REMARK 465 ALA B 712 REMARK 465 ASN B 713 REMARK 465 MET B 816 REMARK 465 GLY C 695 REMARK 465 PRO C 696 REMARK 465 LEU C 697 REMARK 465 GLY C 698 REMARK 465 SER C 699 REMARK 465 SER C 700 REMARK 465 ALA C 701 REMARK 465 PRO C 702 REMARK 465 SER C 703 REMARK 465 VAL C 704 REMARK 465 LYS C 705 REMARK 465 GLY C 706 REMARK 465 VAL C 707 REMARK 465 SER C 708 REMARK 465 PHE C 709 REMARK 465 ASP C 710 REMARK 465 GLN C 711 REMARK 465 ALA C 712 REMARK 465 ASN C 713 REMARK 465 ASN C 714 REMARK 465 MET C 816 REMARK 465 GLY D 695 REMARK 465 PRO D 696 REMARK 465 LEU D 697 REMARK 465 GLY D 698 REMARK 465 SER D 699 REMARK 465 SER D 700 REMARK 465 ALA D 701 REMARK 465 PRO D 702 REMARK 465 SER D 703 REMARK 465 VAL D 704 REMARK 465 LYS D 705 REMARK 465 GLY D 706 REMARK 465 VAL D 707 REMARK 465 SER D 708 REMARK 465 PHE D 709 REMARK 465 ASP D 710 REMARK 465 GLN D 711 REMARK 465 ALA D 712 REMARK 465 ASN D 713 REMARK 465 ASN D 714 REMARK 465 MET D 816 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 714 CG OD1 ND2 REMARK 470 LEU A 716 CG CD1 CD2 REMARK 470 ASN B 714 CG OD1 ND2 REMARK 470 LEU B 716 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 726 HE ARG C 810 1.51 REMARK 500 H GLU D 766 O HOH D 1002 1.51 REMARK 500 HH22 ARG A 801 OD2 ASP E 159 1.59 REMARK 500 O GLU B 766 O HOH B 1001 1.99 REMARK 500 O ALA C 720 O HOH C 1001 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H GLY B 785 O1 SO4 C 904 5444 1.57 REMARK 500 O HOH A 1032 O HOH A 1034 8554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 766 49.17 -143.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1057 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B1054 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1055 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B1056 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1057 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH C1047 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH C1048 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH D1053 DISTANCE = 7.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VWI RELATED DB: PDB DBREF 5VWK A 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 5VWK B 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 5VWK C 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 5VWK D 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 5VWK E 156 163 PDB 5VWK 5VWK 156 163 DBREF 5VWK F 156 163 PDB 5VWK 5VWK 156 163 DBREF 5VWK G 156 163 PDB 5VWK 5VWK 156 163 DBREF 5VWK H 156 163 PDB 5VWK 5VWK 156 163 SEQADV 5VWK GLY A 695 UNP Q14160 EXPRESSION TAG SEQADV 5VWK PRO A 696 UNP Q14160 EXPRESSION TAG SEQADV 5VWK LEU A 697 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY A 698 UNP Q14160 EXPRESSION TAG SEQADV 5VWK SER A 699 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY B 695 UNP Q14160 EXPRESSION TAG SEQADV 5VWK PRO B 696 UNP Q14160 EXPRESSION TAG SEQADV 5VWK LEU B 697 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY B 698 UNP Q14160 EXPRESSION TAG SEQADV 5VWK SER B 699 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY C 695 UNP Q14160 EXPRESSION TAG SEQADV 5VWK PRO C 696 UNP Q14160 EXPRESSION TAG SEQADV 5VWK LEU C 697 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY C 698 UNP Q14160 EXPRESSION TAG SEQADV 5VWK SER C 699 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY D 695 UNP Q14160 EXPRESSION TAG SEQADV 5VWK PRO D 696 UNP Q14160 EXPRESSION TAG SEQADV 5VWK LEU D 697 UNP Q14160 EXPRESSION TAG SEQADV 5VWK GLY D 698 UNP Q14160 EXPRESSION TAG SEQADV 5VWK SER D 699 UNP Q14160 EXPRESSION TAG SEQRES 1 A 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 A 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 A 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 A 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 A 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 A 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 A 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 A 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 A 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 A 122 TRP ARG GLU ARG MET SEQRES 1 B 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 B 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 B 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 B 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 B 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 B 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 B 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 B 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 B 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 B 122 TRP ARG GLU ARG MET SEQRES 1 C 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 C 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 C 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 C 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 C 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 C 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 C 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 C 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 C 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 C 122 TRP ARG GLU ARG MET SEQRES 1 D 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 D 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 D 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 D 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 D 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 D 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 D 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 D 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 D 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 D 122 TRP ARG GLU ARG MET SEQRES 1 E 8 PRO ALA TRP ASP GLU THR ASN LEU SEQRES 1 F 8 PRO ALA TRP ASP GLU THR ASN LEU SEQRES 1 G 8 PRO ALA TRP ASP GLU THR ASN LEU SEQRES 1 H 8 PRO ALA TRP ASP GLU THR ASN LEU HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 B 901 5 HET SO4 C 901 5 HET SO4 C 902 5 HET SO4 C 903 5 HET SO4 C 904 5 HET SO4 D 901 5 HET SO4 D 902 5 HET SO4 D 903 5 HET SO4 G 201 5 HET SO4 H 201 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 12(O4 S 2-) FORMUL 21 HOH *246(H2 O) HELIX 1 AA1 GLY A 767 ALA A 772 1 6 HELIX 2 AA2 GLU A 792 GLY A 802 1 11 HELIX 3 AA3 GLY B 767 GLY B 773 1 7 HELIX 4 AA4 GLU B 792 GLY B 802 1 11 HELIX 5 AA5 GLY C 767 ALA C 772 1 6 HELIX 6 AA6 GLU C 792 GLY C 802 1 11 HELIX 7 AA7 GLY D 767 ALA D 772 1 6 HELIX 8 AA8 GLU D 792 GLY D 802 1 11 SHEET 1 AA1 4 GLU A 724 LEU A 732 0 SHEET 2 AA1 4 ALA A 806 GLU A 814 -1 O VAL A 807 N ILE A 731 SHEET 3 AA1 4 LYS A 779 VAL A 783 -1 N LEU A 781 O ARG A 810 SHEET 4 AA1 4 VAL A 786 ALA A 787 -1 O VAL A 786 N VAL A 783 SHEET 1 AA2 6 GLU A 724 LEU A 732 0 SHEET 2 AA2 6 ALA A 806 GLU A 814 -1 O VAL A 807 N ILE A 731 SHEET 3 AA2 6 LYS A 779 VAL A 783 -1 N LEU A 781 O ARG A 810 SHEET 4 AA2 6 ILE A 758 VAL A 763 -1 N ILE A 758 O LEU A 780 SHEET 5 AA2 6 ILE A 740 GLY A 744 -1 N ALA A 743 O PHE A 759 SHEET 6 AA2 6 GLU H 160 ASN H 162 -1 O THR H 161 N ILE A 742 SHEET 1 AA3 4 GLU B 725 LEU B 732 0 SHEET 2 AA3 4 ALA B 806 ARG B 813 -1 O VAL B 807 N ILE B 731 SHEET 3 AA3 4 LYS B 779 VAL B 783 -1 N LYS B 779 O TRP B 812 SHEET 4 AA3 4 VAL B 786 ALA B 787 -1 O VAL B 786 N VAL B 783 SHEET 1 AA4 6 GLU B 725 LEU B 732 0 SHEET 2 AA4 6 ALA B 806 ARG B 813 -1 O VAL B 807 N ILE B 731 SHEET 3 AA4 6 LYS B 779 VAL B 783 -1 N LYS B 779 O TRP B 812 SHEET 4 AA4 6 ILE B 758 VAL B 763 -1 N ILE B 758 O LEU B 780 SHEET 5 AA4 6 ILE B 740 GLY B 744 -1 N SER B 741 O SER B 761 SHEET 6 AA4 6 GLU G 160 LEU G 163 -1 O LEU G 163 N ILE B 740 SHEET 1 AA5 4 GLU C 724 LEU C 732 0 SHEET 2 AA5 4 ALA C 806 GLU C 814 -1 O MET C 809 N LEU C 729 SHEET 3 AA5 4 LYS C 779 VAL C 783 -1 N LEU C 781 O ARG C 810 SHEET 4 AA5 4 VAL C 786 ALA C 787 -1 O VAL C 786 N VAL C 783 SHEET 1 AA6 6 GLU C 724 LEU C 732 0 SHEET 2 AA6 6 ALA C 806 GLU C 814 -1 O MET C 809 N LEU C 729 SHEET 3 AA6 6 LYS C 779 VAL C 783 -1 N LEU C 781 O ARG C 810 SHEET 4 AA6 6 ILE C 758 VAL C 763 -1 N ILE C 758 O LEU C 780 SHEET 5 AA6 6 ILE C 740 GLY C 744 -1 N ALA C 743 O PHE C 759 SHEET 6 AA6 6 GLU F 160 ASN F 162 -1 O THR F 161 N ILE C 742 SHEET 1 AA7 4 GLU D 724 LEU D 732 0 SHEET 2 AA7 4 ALA D 806 GLU D 814 -1 O ARG D 813 N GLU D 725 SHEET 3 AA7 4 LYS D 779 VAL D 783 -1 N LYS D 779 O TRP D 812 SHEET 4 AA7 4 VAL D 786 ALA D 787 -1 O VAL D 786 N VAL D 783 SHEET 1 AA8 6 GLU D 724 LEU D 732 0 SHEET 2 AA8 6 ALA D 806 GLU D 814 -1 O ARG D 813 N GLU D 725 SHEET 3 AA8 6 LYS D 779 VAL D 783 -1 N LYS D 779 O TRP D 812 SHEET 4 AA8 6 ILE D 758 VAL D 763 -1 N ILE D 758 O LEU D 780 SHEET 5 AA8 6 ILE D 740 GLY D 744 -1 N ALA D 743 O PHE D 759 SHEET 6 AA8 6 GLU E 160 ASN E 162 -1 O THR E 161 N ILE D 742 LINK NH2 ARG B 762 O4 SO4 B 901 1555 1555 1.30 SITE 1 AC1 6 ARG A 762 VAL A 763 SER A 764 GLU A 765 SITE 2 AC1 6 GLY C 736 PRO G 156 SITE 1 AC2 7 GLU A 782 ASN A 784 GLY A 785 GLN A 808 SITE 2 AC2 7 MET A 809 ARG A 810 GLN D 808 SITE 1 AC3 5 ARG B 762 VAL B 763 SER B 764 GLY D 736 SITE 2 AC3 5 PRO H 156 SITE 1 AC4 9 GLU B 792 HIS B 793 HIS B 794 HOH B1010 SITE 2 AC4 9 HIS C 794 VAL C 797 ARG C 801 HOH F 202 SITE 3 AC4 9 ASP G 159 SITE 1 AC5 5 ARG A 762 ARG C 762 SER C 764 ASN H 162 SITE 2 AC5 5 HOH H 305 SITE 1 AC6 3 LYS C 779 LEU C 781 TRP C 812 SITE 1 AC7 9 GLU B 782 VAL B 783 ASN B 784 GLY B 785 SITE 2 AC7 9 GLN B 808 MET B 809 ARG B 810 GLN C 808 SITE 3 AC7 9 HOH C1003 SITE 1 AC8 8 GLU A 792 HIS A 793 HIS A 794 HIS D 794 SITE 2 AC8 8 ARG D 801 HOH D1004 HOH D1017 HOH H 303 SITE 1 AC9 8 ARG B 762 ARG D 762 SER D 764 HOH D1008 SITE 2 AC9 8 HOH D1021 HOH D1034 HOH D1037 ASN G 162 SITE 1 AD1 2 LYS D 779 TRP D 812 SITE 1 AD2 6 TRP G 158 GLU G 160 HOH G 306 ALA H 157 SITE 2 AD2 6 TRP H 158 SO4 H 201 SITE 1 AD3 5 ALA G 157 TRP G 158 SO4 G 201 TRP H 158 SITE 2 AD3 5 GLU H 160 CRYST1 74.760 74.760 222.963 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004485 0.00000