HEADER TRANSFERASE 23-MAY-17 5VX7 TITLE SOLUTION NMR STRUCTURE OF THE BRCT DOMAIN OF S. CEREVISIAE REV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 162-251; COMPND 5 SYNONYM: REVERSIONLESS PROTEIN 1; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N TERMINAL SEQUENCE GHM IS AN EXPRESSION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: REV1, YOR346W, O6339; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS PROTEIN BINDING, DNA REPLICATION, DNA DAMAGE RESPONSE, TRANSLESION KEYWDS 2 DNA SYNTHESIS, BRCT DOMAIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.XU,G.CUI,M.V.BOTUYAN,G.MER REVDAT 3 01-MAY-24 5VX7 1 REMARK REVDAT 2 04-DEC-19 5VX7 1 REMARK REVDAT 1 31-JAN-18 5VX7 0 JRNL AUTH C.XU,G.CUI,M.V.BOTUYAN,G.MER JRNL TITL SOLUTION NMR STRUCTURE OF THE BRCT DOMAIN OF S. CEREVISIAE JRNL TITL 2 REV1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228089. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] REV1-BRCT, 50 REMARK 210 MM SODIUM PHOSPHATE BUFFER, 50 REMARK 210 MM NACL, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] REV1- REMARK 210 BRCT, 50 MM SODIUM PHOSPHATE REMARK 210 BUFFER, 50 MM NACL, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, NMRPIPE, REMARK 210 NMRVIEW, NMRDRAW, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 162 31.59 -142.40 REMARK 500 1 ASN A 168 14.55 55.92 REMARK 500 1 ASN A 212 109.65 -161.27 REMARK 500 1 ASN A 223 10.00 -141.60 REMARK 500 2 LYS A 167 101.22 -17.31 REMARK 500 2 ASN A 168 4.84 52.98 REMARK 500 2 SER A 200 -74.04 -151.73 REMARK 500 2 ASN A 212 22.73 -163.67 REMARK 500 3 LYS A 164 43.23 -79.01 REMARK 500 3 LYS A 167 51.49 37.86 REMARK 500 3 ASN A 168 27.77 47.47 REMARK 500 3 SER A 200 41.12 -74.94 REMARK 500 3 THR A 204 144.81 75.36 REMARK 500 3 SER A 211 20.04 -150.04 REMARK 500 3 ASN A 212 11.71 -160.07 REMARK 500 3 PRO A 214 94.82 -49.43 REMARK 500 3 ALA A 222 -3.88 71.31 REMARK 500 4 LYS A 167 57.40 34.88 REMARK 500 4 ASN A 168 27.66 44.50 REMARK 500 4 LYS A 203 -62.95 -137.43 REMARK 500 4 THR A 206 -52.38 -131.94 REMARK 500 4 ASN A 212 5.70 -161.04 REMARK 500 4 PRO A 214 95.25 -66.77 REMARK 500 4 ASN A 223 -39.50 -141.96 REMARK 500 4 GLN A 245 -9.21 -59.43 REMARK 500 4 TYR A 247 43.07 -141.71 REMARK 500 5 HIS A 191 31.54 -95.54 REMARK 500 5 LYS A 202 25.81 49.79 REMARK 500 5 LYS A 203 -6.36 -145.88 REMARK 500 5 SER A 211 26.65 -156.04 REMARK 500 5 ASN A 212 19.03 -159.28 REMARK 500 5 PRO A 214 109.58 -55.76 REMARK 500 6 SER A 162 46.43 -94.19 REMARK 500 6 LYS A 164 42.38 -80.54 REMARK 500 6 ASN A 168 15.24 56.23 REMARK 500 6 THR A 206 -59.20 -134.19 REMARK 500 6 PRO A 214 87.98 -64.31 REMARK 500 6 ASN A 223 -29.33 -146.09 REMARK 500 7 SER A 211 4.90 -150.10 REMARK 500 7 ASN A 212 26.47 -164.75 REMARK 500 7 ALA A 222 -23.48 72.66 REMARK 500 8 LYS A 167 109.49 -41.95 REMARK 500 8 ASN A 168 10.12 57.89 REMARK 500 8 SER A 201 -167.42 57.56 REMARK 500 8 ASN A 212 -11.10 -154.30 REMARK 500 8 ALA A 222 16.38 54.74 REMARK 500 9 ILE A 165 -41.92 -144.63 REMARK 500 9 LYS A 167 -34.30 63.06 REMARK 500 9 ASN A 168 -9.91 -176.96 REMARK 500 9 SER A 200 -41.19 -152.66 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 176 0.07 SIDE CHAIN REMARK 500 5 TYR A 176 0.08 SIDE CHAIN REMARK 500 6 TYR A 176 0.07 SIDE CHAIN REMARK 500 7 TYR A 176 0.07 SIDE CHAIN REMARK 500 10 TYR A 176 0.09 SIDE CHAIN REMARK 500 14 TYR A 176 0.07 SIDE CHAIN REMARK 500 16 TYR A 176 0.07 SIDE CHAIN REMARK 500 17 ARG A 218 0.10 SIDE CHAIN REMARK 500 20 ARG A 218 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BRCT DOMAIN OF S. CEREVISIAE REV1 REMARK 900 RELATED ID: 30298 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE BRCT DOMAIN OF S. CEREVISIAE REV1 DBREF 5VX7 A 162 251 UNP P12689 REV1_YEAST 162 251 SEQADV 5VX7 GLY A -3 UNP P12689 EXPRESSION TAG SEQADV 5VX7 HIS A -2 UNP P12689 EXPRESSION TAG SEQADV 5VX7 MET A -1 UNP P12689 EXPRESSION TAG SEQRES 1 A 93 GLY HIS MET SER SER LYS ILE PHE LYS ASN CYS VAL ILE SEQRES 2 A 93 TYR ILE ASN GLY TYR THR LYS PRO GLY ARG LEU GLN LEU SEQRES 3 A 93 HIS GLU MET ILE VAL LEU HIS GLY GLY LYS PHE LEU HIS SEQRES 4 A 93 TYR LEU SER SER LYS LYS THR VAL THR HIS ILE VAL ALA SEQRES 5 A 93 SER ASN LEU PRO LEU LYS LYS ARG ILE GLU PHE ALA ASN SEQRES 6 A 93 TYR LYS VAL VAL SER PRO ASP TRP ILE VAL ASP SER VAL SEQRES 7 A 93 LYS GLU ALA ARG LEU LEU PRO TRP GLN ASN TYR SER LEU SEQRES 8 A 93 THR SER HELIX 1 AA1 GLY A 180 HIS A 191 1 12 HELIX 2 AA2 SER A 201 VAL A 205 5 5 HELIX 3 AA3 PRO A 214 ALA A 222 1 9 HELIX 4 AA4 SER A 228 ALA A 239 1 12 HELIX 5 AA5 PRO A 243 TYR A 247 5 5 SHEET 1 AA1 4 LYS A 194 PHE A 195 0 SHEET 2 AA1 4 VAL A 170 ILE A 173 1 N ILE A 171 O LYS A 194 SHEET 3 AA1 4 HIS A 207 VAL A 209 1 O VAL A 209 N TYR A 172 SHEET 4 AA1 4 VAL A 226 VAL A 227 1 O VAL A 227 N ILE A 208 CISPEP 1 LYS A 178 PRO A 179 1 -9.62 CISPEP 2 LYS A 178 PRO A 179 2 -10.83 CISPEP 3 LYS A 178 PRO A 179 3 -10.51 CISPEP 4 LYS A 178 PRO A 179 4 -10.18 CISPEP 5 LYS A 178 PRO A 179 5 -9.24 CISPEP 6 LYS A 178 PRO A 179 6 -10.26 CISPEP 7 LYS A 178 PRO A 179 7 -10.34 CISPEP 8 LYS A 178 PRO A 179 8 -7.03 CISPEP 9 LYS A 178 PRO A 179 9 -10.18 CISPEP 10 LYS A 178 PRO A 179 10 -10.36 CISPEP 11 LYS A 178 PRO A 179 11 -11.03 CISPEP 12 LYS A 178 PRO A 179 12 -10.24 CISPEP 13 LYS A 178 PRO A 179 13 -3.52 CISPEP 14 LYS A 178 PRO A 179 14 -10.16 CISPEP 15 LYS A 178 PRO A 179 15 -10.36 CISPEP 16 LYS A 178 PRO A 179 16 -10.04 CISPEP 17 LYS A 178 PRO A 179 17 -9.28 CISPEP 18 LYS A 178 PRO A 179 18 -10.32 CISPEP 19 LYS A 178 PRO A 179 19 -9.68 CISPEP 20 LYS A 178 PRO A 179 20 -9.65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1