HEADER IMMUNE SYSTEM 26-MAY-17 5VZ1 TITLE CRYSTAL STRUCTURE OF THE APO ANTIBODY FRAGMENT (FAB) RAISED AGAINST C- TITLE 2 TERMINAL DOMAIN OF EBOLA NUCLEOPROTEIN (EBOV, TAFV, BDBV STRAINS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APO ANTIBODY FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: APO ANTIBODY FAB HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EBOLA VIRUS, NUCLEOPROTEIN, FAB, ANTIBODY FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RADWANSKA,U.DEREWENDA,A.KOSSIAKOFF,Z.S.DEREWENDA REVDAT 2 04-OCT-23 5VZ1 1 LINK REVDAT 1 27-JUN-18 5VZ1 0 JRNL AUTH M.J.RADWANSKA,U.DEREWENDA,A.KOSSIAKOFF,Z.S.DEREWENDA JRNL TITL CRYSTAL STRUCTURE OF THE APO ANTIBODY FRAGMENT (FAB) RAISED JRNL TITL 2 AGAINST C-TERMINAL DOMAIN OF EBOLA NUCLEOPROTEIN (EBOV, JRNL TITL 3 TAFV, BDBV STRAINS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 50500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3163 - 5.0856 0.91 3702 152 0.2147 0.2677 REMARK 3 2 5.0856 - 4.0381 0.75 2869 118 0.1823 0.2081 REMARK 3 3 4.0381 - 3.5281 0.84 3128 130 0.2084 0.2389 REMARK 3 4 3.5281 - 3.2058 0.90 3352 138 0.2243 0.3038 REMARK 3 5 3.2058 - 2.9761 0.93 3420 140 0.2306 0.2805 REMARK 3 6 2.9761 - 2.8007 0.94 3468 144 0.2409 0.2647 REMARK 3 7 2.8007 - 2.6605 0.95 3477 143 0.2356 0.2624 REMARK 3 8 2.6605 - 2.5447 0.97 3577 147 0.2183 0.2750 REMARK 3 9 2.5447 - 2.4467 0.99 3586 148 0.2201 0.3197 REMARK 3 10 2.4467 - 2.3623 0.99 3595 148 0.2227 0.2535 REMARK 3 11 2.3623 - 2.2885 0.99 3592 148 0.2271 0.2764 REMARK 3 12 2.2885 - 2.2231 0.99 3610 150 0.2265 0.3045 REMARK 3 13 2.2231 - 2.1645 1.00 3616 149 0.2331 0.3105 REMARK 3 14 2.1645 - 2.1117 0.98 3509 144 0.2325 0.3098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6442 REMARK 3 ANGLE : 0.681 8754 REMARK 3 CHIRALITY : 0.024 987 REMARK 3 PLANARITY : 0.003 1107 REMARK 3 DIHEDRAL : 11.765 2274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5VKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90 MM IMIDAZOLE, PH 8.0, 180 MM ZINC REMARK 280 ACETATE, 27% PEG 3000, 10 MM CHROMIUM (III) CHLORIDE HEXAHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 161.84750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.92375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 242.77125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.84750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 242.77125 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.92375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 381 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 4 REMARK 465 MET A 5 REMARK 465 ALA A 52 REMARK 465 SER A 53 REMARK 465 SER A 54 REMARK 465 LEU A 55 REMARK 465 TYR A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 VAL A 59 REMARK 465 PRO A 60 REMARK 465 CYS A 215 REMARK 465 GLU B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 ASP B 105 REMARK 465 GLN B 106 REMARK 465 SER B 107 REMARK 465 MET B 108 REMARK 465 SER B 109 REMARK 465 TYR B 110 REMARK 465 LYS B 111 REMARK 465 LYS B 228 REMARK 465 SER B 229 REMARK 465 CYS B 230 REMARK 465 ASP B 231 REMARK 465 LYS B 232 REMARK 465 THR B 233 REMARK 465 HIS B 234 REMARK 465 THR B 235 REMARK 465 SER C 1 REMARK 465 ASP C 2 REMARK 465 ILE C 3 REMARK 465 GLN C 4 REMARK 465 MET C 5 REMARK 465 ILE C 49 REMARK 465 TYR C 50 REMARK 465 SER C 51 REMARK 465 ALA C 52 REMARK 465 SER C 53 REMARK 465 SER C 54 REMARK 465 LEU C 55 REMARK 465 TYR C 56 REMARK 465 SER C 57 REMARK 465 GLY C 58 REMARK 465 VAL C 59 REMARK 465 PRO C 60 REMARK 465 GLU C 214 REMARK 465 CYS C 215 REMARK 465 GLU D 1 REMARK 465 ILE D 2 REMARK 465 SER D 3 REMARK 465 TYR D 60 REMARK 465 THR D 61 REMARK 465 SER D 62 REMARK 465 ASP D 105 REMARK 465 GLN D 106 REMARK 465 SER D 107 REMARK 465 MET D 108 REMARK 465 SER D 109 REMARK 465 TYR D 110 REMARK 465 LYS D 111 REMARK 465 LYS D 228 REMARK 465 SER D 229 REMARK 465 CYS D 230 REMARK 465 ASP D 231 REMARK 465 LYS D 232 REMARK 465 THR D 233 REMARK 465 HIS D 234 REMARK 465 THR D 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 42 O HOH B 301 2.00 REMARK 500 O HOH B 424 O HOH B 426 2.01 REMARK 500 O HOH C 507 O HOH C 521 2.06 REMARK 500 O HOH D 400 O HOH D 410 2.08 REMARK 500 OG SER A 169 O HOH A 401 2.08 REMARK 500 O HOH C 477 O HOH C 504 2.09 REMARK 500 O HOH B 433 O HOH B 444 2.10 REMARK 500 O HOH C 524 O HOH C 528 2.11 REMARK 500 N THR A 6 O HOH A 402 2.12 REMARK 500 OG SER D 187 O HOH D 301 2.12 REMARK 500 O HOH B 420 O HOH B 422 2.15 REMARK 500 O HOH C 414 O HOH C 492 2.17 REMARK 500 OG SER D 191 O HOH D 302 2.18 REMARK 500 O HOH B 312 O HOH B 427 2.18 REMARK 500 OG SER B 78 O HOH B 302 2.18 REMARK 500 N SER D 66 O HOH D 303 2.18 REMARK 500 NE2 HIS A 190 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 315 O HOH D 326 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 27 -128.48 -121.11 REMARK 500 SER A 29 -98.39 -74.20 REMARK 500 VAL A 30 -73.15 56.06 REMARK 500 TYR B 57 -47.64 70.66 REMARK 500 LYS B 68 -130.18 31.53 REMARK 500 SER B 141 -156.76 -148.10 REMARK 500 SER B 146 -99.18 -156.51 REMARK 500 THR B 205 -74.23 -92.14 REMARK 500 SER C 27 -88.52 -61.16 REMARK 500 SER C 32 45.20 -85.03 REMARK 500 TYR C 94 63.66 -109.22 REMARK 500 TYR D 58 -151.50 -157.93 REMARK 500 LYS D 68 -109.80 45.05 REMARK 500 SER D 78 -72.96 -54.11 REMARK 500 ASN D 80 92.49 -51.13 REMARK 500 MET D 114 89.78 -68.42 REMARK 500 SER D 144 61.56 -109.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 531 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH C 532 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH D 429 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 138 ND2 REMARK 620 2 ASN C 139 OD1 84.8 REMARK 620 3 HOH C 401 O 118.8 81.9 REMARK 620 4 HIS D 178 NE2 101.5 97.3 139.3 REMARK 620 5 HOH D 330 O 88.1 161.9 86.9 100.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 DBREF 5VZ1 A 1 215 PDB 5VZ1 5VZ1 1 215 DBREF 5VZ1 B 1 235 PDB 5VZ1 5VZ1 1 235 DBREF 5VZ1 C 1 215 PDB 5VZ1 5VZ1 1 215 DBREF 5VZ1 D 1 235 PDB 5VZ1 5VZ1 1 235 SEQRES 1 A 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 A 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 A 215 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 A 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 A 215 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 A 215 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 A 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 A 215 TYR SER TYR SER LEU VAL THR PHE GLY GLN GLY THR LYS SEQRES 9 A 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 A 215 ILE PHE PRO PRO SER ASP SER GLN LEU LYS SER GLY THR SEQRES 11 A 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 A 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 A 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 A 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 A 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 A 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 A 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 235 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 B 235 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 B 235 ALA SER GLY PHE ASN VAL TYR TYR TYR TYR ILE HIS TRP SEQRES 4 B 235 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 B 235 SER ILE SER PRO TYR TYR GLY TYR THR SER TYR ALA ASP SEQRES 6 B 235 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 B 235 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 B 235 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG TRP SER TYR SEQRES 9 B 235 ASP GLN SER MET SER TYR LYS SER GLY MET ASP TYR TRP SEQRES 10 B 235 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 B 235 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 B 235 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 B 235 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 B 235 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 B 235 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 B 235 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 B 235 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 B 235 ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 19 B 235 THR SEQRES 1 C 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 C 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 C 215 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 C 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 C 215 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 C 215 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 C 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 C 215 TYR SER TYR SER LEU VAL THR PHE GLY GLN GLY THR LYS SEQRES 9 C 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 C 215 ILE PHE PRO PRO SER ASP SER GLN LEU LYS SER GLY THR SEQRES 11 C 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 C 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 C 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 C 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 C 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 C 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 C 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 D 235 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 D 235 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 D 235 ALA SER GLY PHE ASN VAL TYR TYR TYR TYR ILE HIS TRP SEQRES 4 D 235 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 D 235 SER ILE SER PRO TYR TYR GLY TYR THR SER TYR ALA ASP SEQRES 6 D 235 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 D 235 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 D 235 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG TRP SER TYR SEQRES 9 D 235 ASP GLN SER MET SER TYR LYS SER GLY MET ASP TYR TRP SEQRES 10 D 235 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 D 235 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 D 235 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 D 235 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 D 235 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 D 235 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 D 235 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 D 235 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 D 235 ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 19 D 235 THR HET ZN A 301 1 HET ZN C 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *524(H2 O) HELIX 1 AA1 SER A 122 SER A 128 1 7 HELIX 2 AA2 LYS A 184 GLU A 188 1 5 HELIX 3 AA3 ASN B 31 TYR B 35 5 5 HELIX 4 AA4 ASP B 65 LYS B 68 5 4 HELIX 5 AA5 ARG B 90 THR B 94 5 5 HELIX 6 AA6 SER B 170 ALA B 172 5 3 HELIX 7 AA7 SER B 201 LEU B 203 5 3 HELIX 8 AA8 LYS B 215 ASN B 218 5 4 HELIX 9 AA9 GLN C 80 PHE C 84 5 5 HELIX 10 AB1 SER C 122 GLY C 129 1 8 HELIX 11 AB2 LYS C 184 GLU C 188 1 5 HELIX 12 AB3 ARG D 90 THR D 94 5 5 HELIX 13 AB4 SER D 170 ALA D 172 5 3 HELIX 14 AB5 SER D 201 LEU D 203 5 3 HELIX 15 AB6 LYS D 215 ASN D 218 5 4 SHEET 1 AA1 5 SER A 10 ALA A 14 0 SHEET 2 AA1 5 THR A 103 ILE A 107 1 O LYS A 104 N SER A 10 SHEET 3 AA1 5 THR A 86 SER A 93 -1 N TYR A 87 O THR A 103 SHEET 4 AA1 5 ALA A 33 GLN A 39 -1 N ALA A 35 O GLN A 90 SHEET 5 AA1 5 LYS A 46 LEU A 47 -1 O LYS A 46 N GLN A 38 SHEET 1 AA2 4 SER A 10 ALA A 14 0 SHEET 2 AA2 4 THR A 103 ILE A 107 1 O LYS A 104 N SER A 10 SHEET 3 AA2 4 THR A 86 SER A 93 -1 N TYR A 87 O THR A 103 SHEET 4 AA2 4 LEU A 96 PHE A 99 -1 O LEU A 96 N SER A 93 SHEET 1 AA3 7 PHE A 63 SER A 68 0 SHEET 2 AA3 7 ASP A 71 ILE A 76 -1 O THR A 75 N SER A 64 SHEET 3 AA3 7 ARG A 19 CYS A 24 -1 N CYS A 24 O PHE A 72 SHEET 4 AA3 7 ALA C 154 SER C 157 1 O SER C 157 N THR A 23 SHEET 5 AA3 7 ALA C 145 VAL C 151 -1 N TRP C 149 O GLN C 156 SHEET 6 AA3 7 VAL C 192 HIS C 199 -1 O GLU C 196 N GLN C 148 SHEET 7 AA3 7 VAL C 206 ASN C 211 -1 O VAL C 206 N VAL C 197 SHEET 1 AA4 4 SER A 115 PHE A 119 0 SHEET 2 AA4 4 THR A 130 PHE A 140 -1 O LEU A 136 N PHE A 117 SHEET 3 AA4 4 TYR A 174 SER A 183 -1 O LEU A 176 N LEU A 137 SHEET 4 AA4 4 SER A 160 VAL A 164 -1 N GLN A 161 O THR A 179 SHEET 1 AA5 7 VAL A 206 ASN A 211 0 SHEET 2 AA5 7 VAL A 192 HIS A 199 -1 N VAL A 197 O VAL A 206 SHEET 3 AA5 7 ALA A 145 VAL A 151 -1 N LYS A 150 O ALA A 194 SHEET 4 AA5 7 ALA A 154 SER A 157 -1 O GLN A 156 N TRP A 149 SHEET 5 AA5 7 ARG C 19 CYS C 24 1 O ARG C 19 N LEU A 155 SHEET 6 AA5 7 ASP C 71 ILE C 76 -1 O PHE C 72 N CYS C 24 SHEET 7 AA5 7 PHE C 63 SER C 68 -1 N SER C 64 O THR C 75 SHEET 1 AA6 4 GLN B 6 SER B 10 0 SHEET 2 AA6 4 LEU B 21 SER B 28 -1 O ALA B 26 N VAL B 8 SHEET 3 AA6 4 THR B 81 MET B 86 -1 O MET B 86 N LEU B 21 SHEET 4 AA6 4 PHE B 71 ASP B 76 -1 N THR B 72 O GLN B 85 SHEET 1 AA7 6 LEU B 14 VAL B 15 0 SHEET 2 AA7 6 THR B 121 VAL B 125 1 O THR B 124 N VAL B 15 SHEET 3 AA7 6 ALA B 95 SER B 103 -1 N TYR B 97 O THR B 121 SHEET 4 AA7 6 ILE B 37 GLN B 42 -1 N VAL B 40 O TYR B 98 SHEET 5 AA7 6 LEU B 48 ILE B 54 -1 O ALA B 52 N TRP B 39 SHEET 6 AA7 6 THR B 61 TYR B 63 -1 O SER B 62 N SER B 53 SHEET 1 AA8 4 LEU B 14 VAL B 15 0 SHEET 2 AA8 4 THR B 121 VAL B 125 1 O THR B 124 N VAL B 15 SHEET 3 AA8 4 ALA B 95 SER B 103 -1 N TYR B 97 O THR B 121 SHEET 4 AA8 4 GLY B 113 TRP B 117 -1 O TYR B 116 N ARG B 101 SHEET 1 AA9 4 SER B 134 LEU B 138 0 SHEET 2 AA9 4 THR B 149 TYR B 159 -1 O LEU B 155 N PHE B 136 SHEET 3 AA9 4 TYR B 190 PRO B 199 -1 O VAL B 198 N ALA B 150 SHEET 4 AA9 4 VAL B 177 THR B 179 -1 N HIS B 178 O VAL B 195 SHEET 1 AB1 4 SER B 134 LEU B 138 0 SHEET 2 AB1 4 THR B 149 TYR B 159 -1 O LEU B 155 N PHE B 136 SHEET 3 AB1 4 TYR B 190 PRO B 199 -1 O VAL B 198 N ALA B 150 SHEET 4 AB1 4 VAL B 183 LEU B 184 -1 N VAL B 183 O SER B 191 SHEET 1 AB2 3 THR B 165 TRP B 168 0 SHEET 2 AB2 3 ILE B 209 HIS B 214 -1 O ASN B 211 N SER B 167 SHEET 3 AB2 3 THR B 219 LYS B 224 -1 O VAL B 221 N VAL B 212 SHEET 1 AB3 5 SER C 10 ALA C 14 0 SHEET 2 AB3 5 THR C 103 ILE C 107 1 O GLU C 106 N LEU C 12 SHEET 3 AB3 5 THR C 86 TYR C 92 -1 N TYR C 87 O THR C 103 SHEET 4 AB3 5 VAL C 34 GLN C 39 -1 N ALA C 35 O GLN C 90 SHEET 5 AB3 5 LYS C 46 LEU C 47 -1 O LYS C 46 N GLN C 38 SHEET 1 AB4 4 SER C 10 ALA C 14 0 SHEET 2 AB4 4 THR C 103 ILE C 107 1 O GLU C 106 N LEU C 12 SHEET 3 AB4 4 THR C 86 TYR C 92 -1 N TYR C 87 O THR C 103 SHEET 4 AB4 4 VAL C 97 PHE C 99 -1 O THR C 98 N GLN C 91 SHEET 1 AB5 4 SER C 115 PHE C 119 0 SHEET 2 AB5 4 THR C 130 PHE C 140 -1 O LEU C 136 N PHE C 117 SHEET 3 AB5 4 TYR C 174 SER C 183 -1 O LEU C 180 N VAL C 133 SHEET 4 AB5 4 SER C 160 VAL C 164 -1 N SER C 163 O SER C 177 SHEET 1 AB6 4 GLN D 6 SER D 10 0 SHEET 2 AB6 4 LEU D 21 SER D 28 -1 O SER D 28 N GLN D 6 SHEET 3 AB6 4 THR D 81 MET D 86 -1 O MET D 86 N LEU D 21 SHEET 4 AB6 4 PHE D 71 ASP D 76 -1 N SER D 74 O TYR D 83 SHEET 1 AB7 5 GLY D 13 VAL D 15 0 SHEET 2 AB7 5 THR D 121 VAL D 125 1 O THR D 124 N GLY D 13 SHEET 3 AB7 5 ALA D 95 SER D 103 -1 N TYR D 97 O THR D 121 SHEET 4 AB7 5 TYR D 36 GLN D 42 -1 N VAL D 40 O TYR D 98 SHEET 5 AB7 5 LEU D 48 ILE D 54 -1 O GLU D 49 N ARG D 41 SHEET 1 AB8 4 GLY D 13 VAL D 15 0 SHEET 2 AB8 4 THR D 121 VAL D 125 1 O THR D 124 N GLY D 13 SHEET 3 AB8 4 ALA D 95 SER D 103 -1 N TYR D 97 O THR D 121 SHEET 4 AB8 4 GLY D 113 TRP D 117 -1 O TYR D 116 N ARG D 101 SHEET 1 AB9 4 SER D 134 LEU D 138 0 SHEET 2 AB9 4 THR D 149 TYR D 159 -1 O LEU D 155 N PHE D 136 SHEET 3 AB9 4 TYR D 190 PRO D 199 -1 O VAL D 198 N ALA D 150 SHEET 4 AB9 4 VAL D 177 THR D 179 -1 N HIS D 178 O VAL D 195 SHEET 1 AC1 4 THR D 145 SER D 146 0 SHEET 2 AC1 4 THR D 149 TYR D 159 -1 O THR D 149 N SER D 146 SHEET 3 AC1 4 TYR D 190 PRO D 199 -1 O VAL D 198 N ALA D 150 SHEET 4 AC1 4 VAL D 183 LEU D 184 -1 N VAL D 183 O SER D 191 SHEET 1 AC2 3 THR D 165 TRP D 168 0 SHEET 2 AC2 3 TYR D 208 HIS D 214 -1 O ASN D 211 N SER D 167 SHEET 3 AC2 3 THR D 219 VAL D 225 -1 O VAL D 221 N VAL D 212 SSBOND 1 CYS A 24 CYS A 89 1555 1555 2.04 SSBOND 2 CYS A 135 CYS A 195 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 99 1555 1555 2.03 SSBOND 4 CYS B 154 CYS B 210 1555 1555 2.03 SSBOND 5 CYS C 24 CYS C 89 1555 1555 2.04 SSBOND 6 CYS C 135 CYS C 195 1555 1555 2.04 SSBOND 7 CYS D 25 CYS D 99 1555 1555 2.03 SSBOND 8 CYS D 154 CYS D 210 1555 1555 2.03 LINK OD2 ASP A 168 ZN ZN A 301 1555 1555 2.30 LINK ND2 ASN C 138 ZN ZN C 301 1555 1555 2.11 LINK OD1 ASN C 139 ZN ZN C 301 1555 1555 2.37 LINK ZN ZN C 301 O HOH C 401 1555 1555 2.50 LINK ZN ZN C 301 NE2 HIS D 178 1555 1555 2.12 LINK ZN ZN C 301 O HOH D 330 1555 1555 2.30 CISPEP 1 TYR A 141 PRO A 142 0 1.93 CISPEP 2 PHE B 160 PRO B 161 0 -4.90 CISPEP 3 GLU B 162 PRO B 163 0 0.01 CISPEP 4 SER C 93 TYR C 94 0 9.08 CISPEP 5 TYR C 141 PRO C 142 0 4.72 CISPEP 6 PHE D 160 PRO D 161 0 -4.49 CISPEP 7 GLU D 162 PRO D 163 0 0.34 SITE 1 AC1 2 ASP A 168 HIS B 178 SITE 1 AC2 5 ASN C 138 ASN C 139 HOH C 401 HIS D 178 SITE 2 AC2 5 HOH D 330 CRYST1 74.621 74.621 323.695 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003089 0.00000