HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-JUN-17 5W1Y TITLE SETD8 IN COMPLEX WITH A COVALENT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE KMT5A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H4-K20-HMTASE KMT5A,HISTONE-LYSINE N-METHYLTRANSFERASE COMPND 5 KMT5A,LYSINE N-METHYLTRANSFERASE 5A,LYSINE-SPECIFIC METHYLASE 5A, COMPND 6 PR/SET DOMAIN-CONTAINING PROTEIN 07,PR/SET07,SET DOMAIN-CONTAINING COMPND 7 PROTEIN 8; COMPND 8 EC: 2.1.1.-,2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT5A, PRSET7, SET07, SET8, SETD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS2 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,W.YU,Y.LI,G.BLUM,M.LUO,F.PITTELLA-SILVA,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 3 04-OCT-23 5W1Y 1 REMARK REVDAT 2 12-JUL-17 5W1Y 1 AUTHOR REMARK REVDAT 1 21-JUN-17 5W1Y 0 JRNL AUTH W.TEMPEL,W.YU,Y.LI,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL SETD8 IN COMPLEX WITH A COVALENT INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2652 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3590 ; 1.616 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5598 ; 0.987 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 6.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;32.017 ;24.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;12.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3091 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 543 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 1.834 ; 1.884 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1295 ; 1.833 ; 1.884 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 2.634 ; 2.822 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COOT WAS USED FOR INTERACTIVE MODEL REMARK 3 BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. DENSITY REMARK 3 FOR RESIDUE 239 (CHAIN A) RESEMBLES A SERYL SIDE CHAIN WITH REMARK 3 ALTERNATE CONFORMATIONS. GEOMETRY RESTRAINTS FOR THE COVALENT REMARK 3 LIGAND WERE PREPARED WITH GRADE, WHICH USED MOGUL. THE LENGTH OF REMARK 3 THE COVALENT LINK WAS RESTRAINED TO 1.75 A, CONSISTENT WITH THE REMARK 3 MEAN LENGTH FOUND IN A MOGUL SEARCH. FOLLOWING ANALYSIS OF REMARK 3 MERGING STATISTICS, ONLY MEASUREMENTS ON IMAGES 1..100 WERE REMARK 3 INCLUDED IN THE MERGING STEP. REMARK 4 REMARK 4 5W1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 20% PEG-3350, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.17400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.94750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.89400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.94750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.17400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.89400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MACROMOLECULAR ASSEMBLY WAS NOT A FOCUS OF THIS CRYSTAL REMARK 300 STRUCTURE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 ALA A 229 REMARK 465 MET A 230 REMARK 465 GLY A 231 REMARK 465 GLY B 228 REMARK 465 ALA B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 ARG B 233 REMARK 465 LYS B 234 REMARK 465 SER B 235 REMARK 465 LYS B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 LEU B 239 REMARK 465 GLN B 240 REMARK 465 HIS B 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 233 CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CE NZ REMARK 470 LEU A 239 CG CD1 CD2 REMARK 470 ARG A 244 CD NE CZ NH1 NH2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 342 NZ REMARK 470 LYS A 349 NZ REMARK 470 LYS A 382 NZ REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 LYS B 260 NZ REMARK 470 ARG B 279 NE CZ NH1 NH2 REMARK 470 GLN B 317 CD OE1 NE2 REMARK 470 LYS B 321 CE NZ REMARK 470 ASN B 332 CG OD1 ND2 REMARK 470 GLN B 347 CD OE1 NE2 REMARK 470 LYS B 382 NZ REMARK 470 LYS B 392 C O CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 333 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 283 -65.53 -105.29 REMARK 500 LEU A 319 -123.84 54.01 REMARK 500 THR A 331 -69.05 -106.76 REMARK 500 THR A 331 -158.68 -123.11 REMARK 500 SER A 343 52.24 -118.99 REMARK 500 SER A 343 52.41 -118.79 REMARK 500 SER B 320 -23.35 88.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9SV A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 9SV B 401 and CYS B REMARK 800 311 DBREF 5W1Y A 232 393 UNP Q9NQR1 KMT5A_HUMAN 232 393 DBREF 5W1Y B 232 393 UNP Q9NQR1 KMT5A_HUMAN 232 393 SEQADV 5W1Y GLY A 228 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y ALA A 229 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y MET A 230 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y GLY A 231 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y SER A 343 UNP Q9NQR1 CYS 343 ENGINEERED MUTATION SEQADV 5W1Y GLY B 228 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y ALA B 229 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y MET B 230 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y GLY B 231 UNP Q9NQR1 EXPRESSION TAG SEQADV 5W1Y SER B 343 UNP Q9NQR1 CYS 343 ENGINEERED MUTATION SEQRES 1 A 166 GLY ALA MET GLY SER ARG LYS SER LYS ALA GLU LEU GLN SEQRES 2 A 166 SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SER SEQRES 3 A 166 GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP GLY SEQRES 4 A 166 LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER ARG SEQRES 5 A 166 GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE GLU SEQRES 6 A 166 ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA GLN SEQRES 7 A 166 ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN TYR SEQRES 8 A 166 LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU THR SEQRES 9 A 166 ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS SER GLY SEQRES 10 A 166 ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL PRO SEQRES 11 A 166 HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA GLY SEQRES 12 A 166 GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS ALA SEQRES 13 A 166 SER ILE GLU ALA HIS PRO TRP LEU LYS HIS SEQRES 1 B 166 GLY ALA MET GLY SER ARG LYS SER LYS ALA GLU LEU GLN SEQRES 2 B 166 SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SER SEQRES 3 B 166 GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP GLY SEQRES 4 B 166 LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER ARG SEQRES 5 B 166 GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE GLU SEQRES 6 B 166 ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA GLN SEQRES 7 B 166 ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN TYR SEQRES 8 B 166 LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU THR SEQRES 9 B 166 ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS SER GLY SEQRES 10 B 166 ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL PRO SEQRES 11 B 166 HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA GLY SEQRES 12 B 166 GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS ALA SEQRES 13 B 166 SER ILE GLU ALA HIS PRO TRP LEU LYS HIS HET 9SV A 401 19 HET UNX A 402 1 HET UNX A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1 HET UNX A 412 1 HET UNX A 413 1 HET UNX A 414 1 HET UNX A 415 1 HET UNX A 416 1 HET 9SV B 401 19 HET UNX B 402 1 HET UNX B 403 1 HET UNX B 404 1 HET UNX B 405 1 HET UNX B 406 1 HET UNX B 407 1 HET UNX B 408 1 HET UNX B 409 1 HET UNX B 410 1 HET UNX B 411 1 HET UNX B 412 1 HET UNX B 413 1 HET UNX B 414 1 HET UNX B 415 1 HET UNX B 416 1 HET UNX B 417 1 HET UNX B 418 1 HET UNX B 419 1 HET UNX B 420 1 HET UNX B 421 1 HET UNX B 422 1 HETNAM 9SV 2-(4-METHYLPIPERAZIN-1-YL)-3-(PHENYLSULFANYL) HETNAM 2 9SV NAPHTHALENE-1,4-DIONE HETNAM UNX UNKNOWN ATOM OR ION HETSYN 9SV BOUND FORM FORMUL 3 9SV 2(C21 H20 N2 O2 S) FORMUL 4 UNX 36(X) FORMUL 41 HOH *208(H2 O) HELIX 1 AA1 SER A 235 GLY A 254 1 20 HELIX 2 AA2 ILE A 293 ALA A 304 1 12 HELIX 3 AA3 ARG A 333 ILE A 338 5 6 HELIX 4 AA4 TYR A 377 HIS A 388 1 12 HELIX 5 AA5 PRO A 389 HIS A 393 5 5 HELIX 6 AA6 GLU B 243 GLY B 254 1 12 HELIX 7 AA7 ILE B 293 GLN B 305 1 13 HELIX 8 AA8 LEU B 334 ILE B 338 5 5 HELIX 9 AA9 TYR B 377 HIS B 388 1 12 HELIX 10 AB1 PRO B 389 LYS B 392 5 4 SHEET 1 AA1 2 MET A 259 ILE A 264 0 SHEET 2 AA1 2 GLY A 268 ALA A 273 -1 O GLY A 268 N ILE A 264 SHEET 1 AA2 3 PHE A 282 TYR A 286 0 SHEET 2 AA2 3 VAL A 356 ALA A 363 -1 O LEU A 359 N TYR A 286 SHEET 3 AA2 3 CYS A 346 ILE A 353 -1 N HIS A 351 O HIS A 358 SHEET 1 AA3 3 ASP A 289 GLU A 292 0 SHEET 2 AA3 3 LYS A 321 ASP A 326 -1 O CYS A 324 N ILE A 291 SHEET 3 AA3 3 MET A 313 TYR A 318 -1 N PHE A 316 O TYR A 323 SHEET 1 AA4 2 ASN A 339 HIS A 340 0 SHEET 2 AA4 2 LEU A 374 TYR A 375 1 O TYR A 375 N ASN A 339 SHEET 1 AA5 2 MET B 259 ILE B 264 0 SHEET 2 AA5 2 GLY B 268 ALA B 273 -1 O GLY B 268 N ILE B 264 SHEET 1 AA6 3 PHE B 282 GLU B 285 0 SHEET 2 AA6 3 VAL B 356 ALA B 363 -1 O LEU B 361 N VAL B 284 SHEET 3 AA6 3 CYS B 346 ILE B 353 -1 N HIS B 351 O HIS B 358 SHEET 1 AA7 3 ASP B 289 GLU B 292 0 SHEET 2 AA7 3 LYS B 321 ASP B 326 -1 O CYS B 324 N ILE B 291 SHEET 3 AA7 3 MET B 313 TYR B 318 -1 N PHE B 316 O TYR B 323 SHEET 1 AA8 2 ASN B 339 HIS B 340 0 SHEET 2 AA8 2 LEU B 374 TYR B 375 1 O TYR B 375 N ASN B 339 LINK SG CYS A 311 C6 9SV A 401 1555 1555 1.75 LINK SG CYS B 311 C6 9SV B 401 1555 1555 1.75 SITE 1 AC1 7 TYR A 303 ASP A 306 THR A 309 GLY A 310 SITE 2 AC1 7 CYS A 311 HOH A 501 9SV B 401 SITE 1 AC2 12 CYS A 311 9SV A 401 TYR B 303 ASP B 306 SITE 2 AC2 12 THR B 309 GLY B 310 TYR B 312 MET B 313 SITE 3 AC2 12 ARG B 380 HOH B 504 HOH B 531 HOH B 538 CRYST1 58.348 39.788 131.895 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007582 0.00000